Wall clock time and date at job start Mon Mar 30 2020 02:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47092 * 2 1 4 4 C 1.52994 * 109.47639 * 239.99630 * 2 1 3 5 5 C 1.52996 * 109.47119 * 64.99683 * 4 2 1 6 6 C 1.50702 * 109.47159 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72211 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 N 1.46504 * 109.47136 * 119.99284 * 2 1 3 15 15 C 1.36879 * 126.39563 * 59.69391 * 14 2 1 16 16 C 1.34671 * 106.81756 * 179.84320 * 15 14 2 17 17 N 1.34125 * 108.02195 * 0.41721 * 16 15 14 18 18 C 1.30499 * 109.25285 * 359.73595 * 17 16 15 19 19 C 1.50703 * 125.64818 * 179.97438 * 18 17 16 20 20 H 1.08997 * 109.50409 * 180.11991 * 19 18 17 21 21 C 1.53122 * 109.50057 * 300.23438 * 19 18 17 22 22 C 1.53127 * 109.16045 * 177.59732 * 21 19 18 23 23 C 1.53034 * 109.27575 * 302.34979 * 22 21 19 24 24 N 1.46847 * 109.52784 * 59.17792 * 23 22 21 25 25 C 1.46849 * 111.19758 * 298.25636 * 24 23 22 26 26 H 1.09003 * 109.47250 * 300.00298 * 1 2 3 27 27 H 1.09005 * 109.47260 * 60.00676 * 1 2 3 28 28 H 1.09000 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46806 * 304.99946 * 4 2 1 30 30 H 1.09000 * 109.47828 * 185.00250 * 4 2 1 31 31 H 1.09004 * 109.47066 * 60.00422 * 5 4 2 32 32 H 1.08994 * 109.47405 * 300.00252 * 5 4 2 33 33 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 34 34 H 1.08004 * 126.59429 * 359.97438 * 15 14 2 35 35 H 1.08001 * 125.98746 * 180.19086 * 16 15 14 36 36 H 1.09001 * 109.52554 * 297.50093 * 21 19 18 37 37 H 1.08991 * 109.52205 * 57.69252 * 21 19 18 38 38 H 1.08993 * 109.49910 * 182.40463 * 22 21 19 39 39 H 1.09000 * 109.50065 * 62.28760 * 22 21 19 40 40 H 1.09001 * 109.46218 * 299.16086 * 23 22 21 41 41 H 1.08999 * 109.45081 * 179.19408 * 23 22 21 42 42 H 1.00906 * 110.99907 * 174.16458 * 24 23 22 43 43 H 1.08998 * 109.46526 * 301.72596 * 25 24 23 44 44 H 1.09000 * 109.46332 * 181.75827 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6353 0.0687 -2.4952 6 6 2.1372 -0.6421 -3.7257 7 1 2.6893 -1.5652 -3.6286 8 6 1.8862 -0.1171 -4.9757 9 7 1.2136 1.0068 -5.0939 10 14 2.5017 -1.0022 -6.5012 11 1 3.2249 -2.2355 -6.0999 12 1 1.3477 -1.3638 -7.3631 13 1 3.4213 -0.1111 -7.2533 14 7 2.0183 -0.6905 1.1963 15 6 1.7648 -1.9898 1.5445 16 6 2.4053 -2.2134 2.7078 17 7 3.0252 -1.0789 3.0650 18 6 2.7978 -0.1624 2.1643 19 6 3.3183 1.2515 2.1991 20 1 2.9674 1.7902 1.3190 21 6 2.8123 1.9515 3.4634 22 6 3.3940 3.3668 3.5213 23 6 4.9220 3.2865 3.4939 24 7 5.3560 2.6094 2.2652 25 6 4.8485 1.2325 2.2101 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -1.7199 -1.2949 30 1 3.1264 -0.7995 -1.2055 31 1 2.0699 1.0673 -2.4494 32 1 0.5490 0.1469 -2.5390 33 1 1.0373 1.3764 -5.9733 34 1 1.1678 -2.6998 0.9914 35 1 2.4149 -3.1424 3.2586 36 1 1.7239 2.0058 3.4390 37 1 3.1303 1.3908 4.3423 38 1 3.0716 3.8554 4.4407 39 1 3.0443 3.9394 2.6623 40 1 5.2718 2.7255 4.3606 41 1 5.3390 4.2932 3.5205 42 1 6.3611 2.6281 2.1777 43 1 5.1986 0.6812 3.0827 44 1 5.2122 0.7474 1.3043 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172502962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:39 Heat of formation + Delta-G solvation = 16.212186 kcal Electronic energy + Delta-G solvation = -22027.565473 eV Core-core repulsion = 18978.775991 eV Total energy + Delta-G solvation = -3048.789483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.16066 -39.40283 -37.72812 -35.09491 -33.69425 -32.66285 -32.40631 -30.27263 -29.21532 -27.23537 -24.87120 -24.67725 -24.24492 -22.86878 -21.58801 -20.60001 -20.01582 -18.80220 -17.99423 -17.22325 -16.54001 -16.28431 -16.07621 -15.58636 -15.41967 -14.91194 -14.77803 -14.66252 -14.32520 -14.25099 -14.16537 -13.98544 -13.71691 -13.32095 -13.21501 -12.95113 -12.64184 -12.53486 -12.35452 -12.09108 -11.81668 -11.64704 -11.62419 -11.56578 -11.43878 -11.28508 -10.87407 -10.56151 -10.42804 -9.44303 -9.25196 -8.22200 -6.32143 1.15292 1.38520 1.40112 1.51949 1.84749 2.19296 2.39836 3.11994 3.13749 3.53740 3.59431 3.76061 3.83656 3.95993 4.02482 4.08229 4.14763 4.28039 4.38203 4.53266 4.55453 4.59978 4.62607 4.73839 4.77074 4.79285 4.79763 4.90422 4.95046 4.98037 5.05385 5.08735 5.11866 5.20538 5.40335 5.46957 5.51390 5.68776 5.80709 5.90298 6.00866 6.19573 6.30604 6.47245 6.83125 7.17762 7.36973 8.89302 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.004343 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.473387 B = 6445.464850 C = 7189.497283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 H 0.096 0.904 4 C -0.098 4.098 5 C 0.032 3.968 6 C -0.544 4.544 7 H 0.054 0.946 8 C 0.007 3.993 9 N -0.928 5.928 10 Si 0.958 3.042 11 H -0.266 1.266 12 H -0.277 1.277 13 H -0.279 1.279 14 N -0.443 5.443 15 C -0.054 4.054 16 C -0.049 4.049 17 N -0.513 5.513 18 C 0.196 3.804 19 C 0.002 3.998 20 H 0.080 0.920 21 C -0.100 4.100 22 C -0.115 4.115 23 C 0.056 3.944 24 N -0.697 5.697 25 C 0.081 3.919 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.042 0.958 31 H -0.005 1.005 32 H 0.013 0.987 33 H 0.264 0.736 34 H 0.187 0.813 35 H 0.188 0.812 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.092 0.908 42 H 0.355 0.645 43 H 0.037 0.963 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.021 1.543 17.385 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.031 3.969 3 H 0.114 0.886 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.582 4.582 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.568 5.568 10 Si 0.783 3.217 11 H -0.190 1.190 12 H -0.202 1.202 13 H -0.204 1.204 14 N -0.124 5.124 15 C -0.188 4.188 16 C -0.197 4.197 17 N -0.232 5.232 18 C -0.067 4.067 19 C -0.018 4.018 20 H 0.098 0.902 21 C -0.138 4.138 22 C -0.153 4.153 23 C -0.073 4.073 24 N -0.330 5.330 25 C -0.050 4.050 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.013 0.987 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.204 0.796 35 H 0.205 0.795 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.111 0.889 42 H 0.174 0.826 43 H 0.055 0.945 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.862 2.089 17.464 17.820 hybrid contribution 0.244 -1.102 -1.278 1.705 sum 3.106 0.987 16.186 16.511 Atomic orbital electron populations 1.22074 0.92124 1.03483 1.03045 1.21594 0.96433 0.96696 0.82210 0.88627 1.21731 0.99442 0.99348 0.93061 1.18970 0.96060 0.94291 0.91270 1.21635 1.35313 1.08802 0.92437 0.92779 1.25842 0.95242 0.95695 1.02378 1.70067 1.41290 1.20812 1.24590 0.85500 0.78263 0.78774 0.79144 1.19013 1.20208 1.20450 1.45773 1.37354 1.10825 1.18401 1.23009 1.08074 0.87059 1.00682 1.22632 1.01694 0.98286 0.97081 1.70122 1.24718 1.00774 1.27611 1.23323 0.98139 0.97736 0.87481 1.19580 0.95635 0.86034 1.00583 0.90160 1.21495 1.00155 0.96332 0.95838 1.21621 0.95015 0.95553 1.03105 1.22020 0.95971 0.99460 0.89879 1.60204 1.17421 1.15919 1.39418 1.21634 0.93131 0.89740 1.00447 0.91340 0.90624 0.91301 0.92084 0.93905 0.98666 0.96885 0.92686 0.79576 0.79462 0.92076 0.91765 0.89246 0.91517 0.94792 0.88937 0.82570 0.94501 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 9.00 71.98 0.65 -3.69 16 2 C 0.13 4.31 3.00 44.99 0.14 4.45 16 3 H 0.10 3.16 6.28 -2.39 -0.01 3.14 16 4 C -0.10 -3.84 4.63 30.59 0.14 -3.70 16 5 C 0.03 1.56 4.73 29.85 0.14 1.70 16 6 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 7 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 8 C 0.01 0.38 5.46 84.66 0.46 0.84 16 9 N -0.93 -54.51 13.29 21.45 0.28 -54.23 16 10 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 13 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 14 N -0.44 -13.70 2.61 -491.91 -1.28 -14.99 16 15 C -0.05 -1.55 10.70 83.09 0.89 -0.66 16 16 C -0.05 -1.40 11.87 83.52 0.99 -0.41 16 17 N -0.51 -16.42 11.25 -188.13 -2.12 -18.53 16 18 C 0.20 6.07 6.42 138.13 0.89 6.95 16 19 C 0.00 0.06 2.70 -11.49 -0.03 0.03 16 20 H 0.08 2.33 6.32 -2.39 -0.02 2.32 16 21 C -0.10 -2.28 5.27 30.68 0.16 -2.12 16 22 C -0.12 -2.11 6.09 30.65 0.19 -1.93 16 23 C 0.06 0.98 6.55 86.32 0.57 1.54 16 24 N -0.70 -14.99 6.85 -514.01 -3.52 -18.51 16 25 C 0.08 2.08 5.82 86.32 0.50 2.59 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 2.41 6.57 -2.38 -0.02 2.39 16 28 H 0.07 1.87 7.95 -2.39 -0.02 1.85 16 29 H 0.06 2.33 8.09 -2.38 -0.02 2.31 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H -0.01 -0.27 8.14 -2.38 -0.02 -0.29 16 32 H 0.01 0.66 6.56 -2.39 -0.02 0.64 16 33 H 0.26 14.60 8.31 -92.70 -0.77 13.82 16 34 H 0.19 4.43 8.06 -2.91 -0.02 4.41 16 35 H 0.19 4.16 8.06 -2.91 -0.02 4.14 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.35 6.33 8.90 -89.69 -0.80 5.53 16 43 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -63.92 348.58 1.48 -62.44 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.17 Total: 22.52 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 5.91 Total: -24.21 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -6.63 Total: -106.26 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -63.92 1.48 -62.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172502962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.657 kcal (2) G-P(sol) polarization free energy of solvation -63.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds