Wall clock time and date at job start Mon Mar 30 2020 02:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47423 * 2 1 4 4 C 1.53002 * 109.46998 * 120.00545 * 2 1 3 5 5 C 1.53001 * 109.46680 * 294.99834 * 4 2 1 6 6 C 1.50701 * 109.47072 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99684 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00132 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00007 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00029 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47222 * 90.00129 * 10 8 6 12 12 H 1.48500 * 109.47475 * 210.00130 * 10 8 6 13 13 H 1.48505 * 109.47321 * 330.00211 * 10 8 6 14 14 N 1.46508 * 109.46926 * 240.00105 * 2 1 3 15 15 C 1.36885 * 126.39494 * 300.02611 * 14 2 1 16 16 C 1.34664 * 106.81615 * 179.97438 * 15 14 2 17 17 N 1.34134 * 108.02154 * 359.77910 * 16 15 14 18 18 C 1.30502 * 109.25385 * 0.37101 * 17 16 15 19 19 C 1.50700 * 125.65121 * 179.89212 * 18 17 16 20 20 H 1.08992 * 109.53928 * 179.59404 * 19 18 17 21 21 C 1.53126 * 109.50141 * 299.68989 * 19 18 17 22 22 C 1.53124 * 109.15878 * 177.59288 * 21 19 18 23 23 C 1.53035 * 109.27794 * 302.34791 * 22 21 19 24 24 N 1.46844 * 109.52494 * 59.18054 * 23 22 21 25 25 C 1.46854 * 111.19703 * 298.25280 * 24 23 22 26 26 H 1.08996 * 109.47412 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47419 * 300.00190 * 1 2 3 28 28 H 1.09012 * 109.47047 * 59.99813 * 1 2 3 29 29 H 1.08995 * 109.47311 * 54.99415 * 4 2 1 30 30 H 1.08997 * 109.47218 * 174.99767 * 4 2 1 31 31 H 1.09004 * 109.46991 * 300.00034 * 5 4 2 32 32 H 1.08997 * 109.47350 * 60.00013 * 5 4 2 33 33 H 0.96998 * 119.99654 * 179.97438 * 9 8 6 34 34 H 1.07991 * 126.59381 * 359.94875 * 15 14 2 35 35 H 1.08000 * 125.99455 * 179.97438 * 16 15 14 36 36 H 1.08998 * 109.52297 * 297.50236 * 21 19 18 37 37 H 1.08999 * 109.51925 * 57.69439 * 21 19 18 38 38 H 1.08999 * 109.50059 * 62.28737 * 22 21 19 39 39 H 1.08993 * 109.49981 * 182.40384 * 22 21 19 40 40 H 1.09002 * 109.46466 * 299.16376 * 23 22 21 41 41 H 1.09002 * 109.45306 * 179.19059 * 23 22 21 42 42 H 1.00903 * 110.99984 * 174.16441 * 24 23 22 43 43 H 1.08994 * 109.46310 * 301.73015 * 25 24 23 44 44 H 1.09004 * 109.45830 * 181.75702 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6352 0.0688 2.4953 6 6 2.1380 -0.6413 3.7257 7 1 2.6906 -1.5642 3.6286 8 6 1.8926 -0.1130 4.9753 9 7 1.2201 1.0110 5.0935 10 14 2.5152 -0.9936 6.5005 11 1 3.8768 -0.5036 6.8338 12 1 1.5993 -0.7221 7.6374 13 1 2.5645 -2.4553 6.2427 14 7 2.0183 -0.6906 -1.1963 15 6 1.7692 -1.9916 -1.5416 16 6 2.4045 -2.2135 -2.7080 17 7 3.0206 -1.0776 -3.0677 18 6 2.7977 -0.1625 -2.1643 19 6 3.3185 1.2512 -2.1990 20 1 2.9680 1.7905 -1.3191 21 6 4.8496 1.2319 -2.2105 22 6 5.3696 2.6689 -2.3064 23 6 4.8042 3.3277 -3.5667 24 7 3.3370 3.3221 -3.5073 25 6 2.8126 1.9511 -3.4625 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8901 29 1 1.6053 -1.7199 1.2951 30 1 3.1263 -0.7997 1.2056 31 1 2.0699 1.0674 2.4494 32 1 0.5489 0.1471 2.5389 33 1 1.0471 1.3825 5.9726 34 1 1.1773 -2.7033 -0.9854 35 1 2.4136 -3.1422 -3.2592 36 1 5.2149 0.7728 -1.2919 37 1 5.2002 0.6596 -3.0693 38 1 5.0513 3.2305 -1.4281 39 1 6.4583 2.6592 -2.3580 40 1 5.1342 2.7737 -4.4455 41 1 5.1611 4.3557 -3.6303 42 1 2.9418 3.8352 -4.2810 43 1 3.1520 1.4036 -4.3416 44 1 1.7230 1.9793 -3.4504 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172502979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:45 Heat of formation + Delta-G solvation = 33.361471 kcal Electronic energy + Delta-G solvation = -22025.962710 eV Core-core repulsion = 18977.916876 eV Total energy + Delta-G solvation = -3048.045834 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.95876 -38.47277 -36.24871 -33.15334 -32.71609 -31.49021 -31.03706 -28.74559 -28.11403 -25.45549 -23.89734 -23.42668 -22.94633 -21.46269 -20.34426 -19.36373 -18.86368 -17.30007 -16.44398 -16.03994 -15.11718 -14.80409 -14.59166 -14.51867 -14.21244 -13.89173 -13.63652 -13.37729 -13.18827 -13.14893 -12.80992 -12.46806 -12.25947 -12.23386 -11.53816 -11.46047 -11.21554 -10.93589 -10.86957 -10.69567 -10.66079 -10.56216 -10.50435 -9.92762 -9.88331 -9.56027 -9.33026 -8.99528 -8.58957 -8.43570 -8.09031 -6.09344 -4.12192 2.35123 3.08267 3.26907 3.33613 3.36719 3.37163 4.04565 4.38901 4.56887 4.80140 4.83533 4.91935 5.00319 5.07188 5.24948 5.26924 5.28475 5.34997 5.44437 5.55642 5.59812 5.69036 5.71705 5.76347 5.81113 5.91716 5.96734 6.04221 6.05389 6.18510 6.30237 6.34553 6.36437 6.50728 6.72352 6.85729 6.86436 7.05352 7.21999 7.51257 7.52561 7.63269 7.88235 8.30081 8.37159 8.93595 9.52654 11.01808 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.004329 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.025205 B = 6466.309575 C = 7205.624134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 H 0.098 0.902 4 C -0.115 4.115 5 C 0.025 3.975 6 C -0.523 4.523 7 H 0.055 0.945 8 C 0.059 3.941 9 N -0.894 5.894 10 Si 0.892 3.108 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.436 5.436 15 C -0.046 4.046 16 C -0.043 4.043 17 N -0.495 5.495 18 C 0.203 3.797 19 C 0.004 3.996 20 H 0.091 0.909 21 C -0.108 4.108 22 C -0.119 4.119 23 C 0.057 3.943 24 N -0.691 5.691 25 C 0.074 3.926 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.018 0.982 32 H 0.023 0.977 33 H 0.262 0.738 34 H 0.168 0.832 35 H 0.164 0.836 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.030 0.970 41 H 0.073 0.927 42 H 0.344 0.656 43 H 0.043 0.957 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.708 1.944 -16.761 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.116 0.884 4 C -0.153 4.153 5 C -0.012 4.012 6 C -0.561 4.561 7 H 0.073 0.927 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.720 3.280 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 N -0.117 5.117 15 C -0.181 4.181 16 C -0.191 4.191 17 N -0.214 5.214 18 C -0.059 4.059 19 C -0.017 4.017 20 H 0.109 0.891 21 C -0.146 4.146 22 C -0.156 4.156 23 C -0.072 4.072 24 N -0.322 5.322 25 C -0.056 4.056 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.186 0.814 35 H 0.181 0.819 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.049 0.951 41 H 0.092 0.908 42 H 0.161 0.839 43 H 0.062 0.938 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.016 2.331 -16.521 16.955 hybrid contribution -0.123 -1.062 0.833 1.355 sum 2.893 1.270 -15.688 16.003 Atomic orbital electron populations 1.22150 0.93430 1.02876 1.02969 1.21879 0.95582 0.97317 0.83211 0.88368 1.22032 1.00274 0.99617 0.93377 1.19123 0.97101 0.95093 0.89897 1.21168 1.35403 1.08568 0.90997 0.92712 1.24991 0.95107 0.94975 0.99149 1.69948 1.40140 1.19377 1.23811 0.86591 0.78743 0.80059 0.82622 1.20589 1.21133 1.19862 1.45802 1.36825 1.10263 1.18773 1.22602 1.07944 0.87170 1.00370 1.22149 1.02452 0.97761 0.96758 1.70108 1.24041 1.00102 1.27109 1.22931 0.98225 0.97098 0.87694 1.19502 0.95908 0.86551 0.99717 0.89118 1.21556 0.93326 0.96819 1.02919 1.21610 0.99763 0.95786 0.98483 1.21941 0.87785 1.00375 0.97124 1.60217 1.06775 1.14942 1.50263 1.21804 0.99320 0.88075 0.96446 0.92132 0.89302 0.92944 0.92489 0.92662 0.96376 0.95848 0.92872 0.81437 0.81915 0.91537 0.91124 0.90845 0.91300 0.95142 0.90843 0.83855 0.93849 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.01 37.16 0.33 -2.00 16 2 C 0.12 1.99 3.00 -67.92 -0.20 1.78 16 3 H 0.10 1.60 6.28 -51.93 -0.33 1.27 16 4 C -0.11 -2.25 4.63 -26.73 -0.12 -2.37 16 5 C 0.03 0.61 4.73 -27.88 -0.13 0.48 16 6 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 7 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 10 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 14 N -0.44 -6.91 2.61 -106.83 -0.28 -7.19 16 15 C -0.05 -0.69 10.70 -16.56 -0.18 -0.87 16 16 C -0.04 -0.64 11.87 -17.81 -0.21 -0.85 16 17 N -0.49 -8.12 11.25 -10.82 -0.12 -8.24 16 18 C 0.20 3.19 6.42 -155.42 -1.00 2.20 16 19 C 0.00 0.05 2.70 -91.69 -0.25 -0.20 16 20 H 0.09 1.30 6.32 -51.93 -0.33 0.97 16 21 C -0.11 -1.37 5.27 -26.60 -0.14 -1.51 16 22 C -0.12 -1.26 6.09 -26.65 -0.16 -1.43 16 23 C 0.06 0.55 6.55 -3.84 -0.03 0.53 16 24 N -0.69 -7.24 6.85 -113.81 -0.78 -8.02 16 25 C 0.07 0.89 5.82 -3.83 -0.02 0.86 16 26 H 0.06 0.87 7.95 -51.93 -0.41 0.45 16 27 H 0.09 1.42 6.56 -51.93 -0.34 1.08 16 28 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.02 0.58 6.56 -51.93 -0.34 0.24 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.17 2.17 8.06 -52.49 -0.42 1.74 16 35 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.34 2.90 8.90 -39.29 -0.35 2.55 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 348.58 15.07 5.25 5.25 Total: -1.00 -30.12 348.58 -10.29 -40.41 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.56 Total: 3.26 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -2.52 Total: -16.44 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.44 Total: -48.69 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.12 -10.29 -40.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172502979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.770 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds