Wall clock time and date at job start Mon Mar 30 2020 02:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47423 * 2 1 4 4 C 1.53002 * 109.46998 * 120.00545 * 2 1 3 5 5 C 1.53001 * 109.46680 * 294.99834 * 4 2 1 6 6 C 1.50701 * 109.47072 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99684 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00132 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00007 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00029 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47222 * 90.00129 * 10 8 6 12 12 H 1.48500 * 109.47475 * 210.00130 * 10 8 6 13 13 H 1.48505 * 109.47321 * 330.00211 * 10 8 6 14 14 N 1.46508 * 109.46926 * 240.00105 * 2 1 3 15 15 C 1.36885 * 126.39494 * 300.02611 * 14 2 1 16 16 C 1.34664 * 106.81615 * 179.97438 * 15 14 2 17 17 N 1.34134 * 108.02154 * 359.77910 * 16 15 14 18 18 C 1.30502 * 109.25385 * 0.37101 * 17 16 15 19 19 C 1.50700 * 125.65121 * 179.89212 * 18 17 16 20 20 H 1.08992 * 109.53928 * 179.59404 * 19 18 17 21 21 C 1.53126 * 109.50141 * 299.68989 * 19 18 17 22 22 C 1.53124 * 109.15878 * 177.59288 * 21 19 18 23 23 C 1.53035 * 109.27794 * 302.34791 * 22 21 19 24 24 N 1.46844 * 109.52494 * 59.18054 * 23 22 21 25 25 C 1.46854 * 111.19703 * 298.25280 * 24 23 22 26 26 H 1.08996 * 109.47412 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47419 * 300.00190 * 1 2 3 28 28 H 1.09012 * 109.47047 * 59.99813 * 1 2 3 29 29 H 1.08995 * 109.47311 * 54.99415 * 4 2 1 30 30 H 1.08997 * 109.47218 * 174.99767 * 4 2 1 31 31 H 1.09004 * 109.46991 * 300.00034 * 5 4 2 32 32 H 1.08997 * 109.47350 * 60.00013 * 5 4 2 33 33 H 0.96998 * 119.99654 * 179.97438 * 9 8 6 34 34 H 1.07991 * 126.59381 * 359.94875 * 15 14 2 35 35 H 1.08000 * 125.99455 * 179.97438 * 16 15 14 36 36 H 1.08998 * 109.52297 * 297.50236 * 21 19 18 37 37 H 1.08999 * 109.51925 * 57.69439 * 21 19 18 38 38 H 1.08999 * 109.50059 * 62.28737 * 22 21 19 39 39 H 1.08993 * 109.49981 * 182.40384 * 22 21 19 40 40 H 1.09002 * 109.46466 * 299.16376 * 23 22 21 41 41 H 1.09002 * 109.45306 * 179.19059 * 23 22 21 42 42 H 1.00903 * 110.99984 * 174.16441 * 24 23 22 43 43 H 1.08994 * 109.46310 * 301.73015 * 25 24 23 44 44 H 1.09004 * 109.45830 * 181.75702 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6352 0.0688 2.4953 6 6 2.1380 -0.6413 3.7257 7 1 2.6906 -1.5642 3.6286 8 6 1.8926 -0.1130 4.9753 9 7 1.2201 1.0110 5.0935 10 14 2.5152 -0.9936 6.5005 11 1 3.8768 -0.5036 6.8338 12 1 1.5993 -0.7221 7.6374 13 1 2.5645 -2.4553 6.2427 14 7 2.0183 -0.6906 -1.1963 15 6 1.7692 -1.9916 -1.5416 16 6 2.4045 -2.2135 -2.7080 17 7 3.0206 -1.0776 -3.0677 18 6 2.7977 -0.1625 -2.1643 19 6 3.3185 1.2512 -2.1990 20 1 2.9680 1.7905 -1.3191 21 6 4.8496 1.2319 -2.2105 22 6 5.3696 2.6689 -2.3064 23 6 4.8042 3.3277 -3.5667 24 7 3.3370 3.3221 -3.5073 25 6 2.8126 1.9511 -3.4625 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8901 29 1 1.6053 -1.7199 1.2951 30 1 3.1263 -0.7997 1.2056 31 1 2.0699 1.0674 2.4494 32 1 0.5489 0.1471 2.5389 33 1 1.0471 1.3825 5.9726 34 1 1.1773 -2.7033 -0.9854 35 1 2.4136 -3.1422 -3.2592 36 1 5.2149 0.7728 -1.2919 37 1 5.2002 0.6596 -3.0693 38 1 5.0513 3.2305 -1.4281 39 1 6.4583 2.6592 -2.3580 40 1 5.1342 2.7737 -4.4455 41 1 5.1611 4.3557 -3.6303 42 1 2.9418 3.8352 -4.2810 43 1 3.1520 1.4036 -4.3416 44 1 1.7230 1.9793 -3.4504 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172502979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:44 Heat of formation + Delta-G solvation = 16.185094 kcal Electronic energy + Delta-G solvation = -22026.707534 eV Core-core repulsion = 18977.916876 eV Total energy + Delta-G solvation = -3048.790658 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.16088 -39.40498 -37.72876 -35.09702 -33.69273 -32.66582 -32.41505 -30.27184 -29.21727 -27.23556 -24.90142 -24.63464 -24.25903 -22.87602 -21.58395 -20.60769 -20.01822 -18.80512 -17.99174 -17.21795 -16.54781 -16.28235 -16.06093 -15.60629 -15.43479 -14.91016 -14.80385 -14.53307 -14.43415 -14.26224 -14.15275 -13.98646 -13.71710 -13.32816 -13.20637 -12.93861 -12.63450 -12.53418 -12.38409 -12.08483 -11.82186 -11.67981 -11.60227 -11.57323 -11.44807 -11.30222 -10.87609 -10.56026 -10.42803 -9.43720 -9.25240 -8.22231 -6.32409 1.15340 1.39562 1.39916 1.50681 1.84578 2.19274 2.39668 3.11840 3.13946 3.53982 3.59338 3.75705 3.83430 3.96110 4.02265 4.08088 4.13344 4.28456 4.39181 4.53089 4.55113 4.59799 4.62416 4.72781 4.77149 4.78700 4.79249 4.89638 4.94939 4.97212 5.05496 5.08214 5.11925 5.20718 5.38806 5.46372 5.51099 5.68350 5.80360 5.90216 6.00124 6.19285 6.30566 6.50341 6.82649 7.17662 7.36720 8.89026 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.004329 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.025205 B = 6466.309575 C = 7205.624134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.133 3.867 3 H 0.096 0.904 4 C -0.098 4.098 5 C 0.032 3.968 6 C -0.545 4.545 7 H 0.054 0.946 8 C 0.007 3.993 9 N -0.927 5.927 10 Si 0.958 3.042 11 H -0.275 1.275 12 H -0.280 1.280 13 H -0.266 1.266 14 N -0.443 5.443 15 C -0.054 4.054 16 C -0.049 4.049 17 N -0.513 5.513 18 C 0.196 3.804 19 C 0.002 3.998 20 H 0.080 0.920 21 C -0.104 4.104 22 C -0.116 4.116 23 C 0.058 3.942 24 N -0.695 5.695 25 C 0.084 3.916 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.042 0.958 31 H -0.005 1.005 32 H 0.013 0.987 33 H 0.264 0.736 34 H 0.187 0.813 35 H 0.188 0.812 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.035 0.965 41 H 0.093 0.907 42 H 0.357 0.643 43 H 0.036 0.964 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 1.542 -17.417 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.031 3.969 3 H 0.114 0.886 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.583 4.583 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.783 3.217 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.190 1.190 14 N -0.124 5.124 15 C -0.188 4.188 16 C -0.197 4.197 17 N -0.232 5.232 18 C -0.067 4.067 19 C -0.018 4.018 20 H 0.098 0.902 21 C -0.142 4.142 22 C -0.154 4.154 23 C -0.071 4.071 24 N -0.328 5.328 25 C -0.046 4.046 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.013 0.987 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.204 0.796 35 H 0.205 0.795 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.053 0.947 41 H 0.111 0.889 42 H 0.177 0.823 43 H 0.055 0.945 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.316 1.922 -17.203 17.625 hybrid contribution -0.197 -0.943 1.006 1.393 sum 3.119 0.979 -16.198 16.524 Atomic orbital electron populations 1.22069 0.92093 1.03465 1.03061 1.21597 0.96468 0.96672 0.82200 0.88637 1.21737 0.99420 0.99372 0.93088 1.18969 0.96075 0.94274 0.91255 1.21603 1.35427 1.08804 0.92466 0.92779 1.25838 0.95241 0.95681 1.02365 1.70059 1.41240 1.20755 1.24675 0.85555 0.78260 0.79165 0.78743 1.20017 1.20565 1.19010 1.45774 1.37272 1.10783 1.18530 1.23005 1.08148 0.87011 1.00660 1.22632 1.01837 0.98246 0.96964 1.70126 1.24684 1.00808 1.27607 1.23317 0.97983 0.97807 0.87551 1.19576 0.96421 0.85731 1.00117 0.90174 1.21506 0.92784 0.98170 1.01752 1.21614 1.00819 0.94150 0.98806 1.21982 0.87149 1.01479 0.96499 1.60197 1.07473 1.13979 1.51163 1.21630 0.99138 0.88743 0.95130 0.91303 0.90643 0.91317 0.92077 0.93926 0.98673 0.96876 0.92676 0.79587 0.79457 0.93154 0.91680 0.91749 0.89654 0.94702 0.88864 0.82337 0.94531 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 9.01 71.98 0.65 -3.69 16 2 C 0.13 4.32 3.00 44.99 0.14 4.45 16 3 H 0.10 3.16 6.28 -2.39 -0.02 3.14 16 4 C -0.10 -3.85 4.63 30.60 0.14 -3.71 16 5 C 0.03 1.57 4.73 29.85 0.14 1.71 16 6 C -0.55 -30.08 9.11 25.60 0.23 -29.85 16 7 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 8 C 0.01 0.41 5.46 84.65 0.46 0.87 16 9 N -0.93 -54.46 13.29 21.45 0.28 -54.17 16 10 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 13 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 14 N -0.44 -13.71 2.61 -491.90 -1.28 -15.00 16 15 C -0.05 -1.55 10.70 83.08 0.89 -0.66 16 16 C -0.05 -1.39 11.87 83.52 0.99 -0.40 16 17 N -0.51 -16.41 11.25 -188.13 -2.12 -18.53 16 18 C 0.20 6.08 6.42 138.13 0.89 6.96 16 19 C 0.00 0.06 2.70 -11.49 -0.03 0.03 16 20 H 0.08 2.33 6.32 -2.39 -0.02 2.32 16 21 C -0.10 -2.63 5.27 30.68 0.16 -2.47 16 22 C -0.12 -2.36 6.09 30.65 0.19 -2.17 16 23 C 0.06 1.01 6.55 86.33 0.57 1.58 16 24 N -0.70 -13.58 6.85 -514.00 -3.52 -17.10 16 25 C 0.08 1.96 5.82 86.32 0.50 2.46 16 26 H 0.07 1.87 7.95 -2.39 -0.02 1.85 16 27 H 0.07 2.41 6.56 -2.39 -0.02 2.39 16 28 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.06 2.34 8.09 -2.39 -0.02 2.32 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H -0.01 -0.27 8.14 -2.38 -0.02 -0.29 16 32 H 0.01 0.66 6.56 -2.39 -0.02 0.65 16 33 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.19 4.43 8.06 -2.92 -0.02 4.41 16 35 H 0.19 4.16 8.06 -2.91 -0.02 4.14 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.36 5.37 8.90 -89.69 -0.80 4.57 16 43 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -63.70 348.58 1.48 -62.23 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.17 Total: 22.04 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 5.91 Total: -24.89 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -6.63 Total: -104.79 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -63.70 1.48 -62.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172502979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.413 kcal (2) G-P(sol) polarization free energy of solvation -63.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds