Wall clock time and date at job start Mon Mar 30 2020 02:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35034 * 126.39785 * 2 1 4 4 N 1.30503 * 108.70195 * 179.82987 * 3 2 1 5 5 C 1.34128 * 109.25241 * 0.44041 * 4 3 2 6 6 C 1.50698 * 125.99141 * 179.72812 * 5 4 3 7 7 C 1.53004 * 109.47271 * 304.99964 * 6 5 4 8 8 N 1.46890 * 109.47274 * 179.97438 * 7 6 5 9 9 C 1.46901 * 110.99991 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47333 * 275.00295 * 9 8 7 11 11 C 1.53004 * 109.47360 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47117 * 59.99593 * 11 10 9 13 13 C 1.50701 * 109.46990 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00372 * 120.00180 * 13 12 11 15 15 C 1.37883 * 119.99893 * 299.99902 * 13 12 11 16 16 N 1.31518 * 119.99806 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99960 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47364 * 89.99787 * 17 15 13 19 19 H 1.48502 * 109.46653 * 210.00316 * 17 15 13 20 20 H 1.48507 * 109.47138 * 329.99703 * 17 15 13 21 21 C 1.53002 * 109.47513 * 299.99991 * 12 11 10 22 22 C 1.53004 * 109.47070 * 154.99952 * 9 8 7 23 23 C 1.34675 * 108.02157 * 359.72797 * 5 4 3 24 24 H 1.09001 * 109.47060 * 269.69268 * 1 2 3 25 25 H 1.09004 * 109.47073 * 29.68757 * 1 2 3 26 26 H 1.09000 * 109.47212 * 149.68840 * 1 2 3 27 27 H 1.08005 * 125.65147 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.47145 * 64.99961 * 6 5 4 29 29 H 1.09003 * 109.47658 * 184.99927 * 6 5 4 30 30 H 1.08993 * 109.46766 * 300.00086 * 7 6 5 31 31 H 1.09003 * 109.46368 * 59.99743 * 7 6 5 32 32 H 1.00905 * 111.00061 * 303.95537 * 8 7 6 33 33 H 1.08997 * 109.47267 * 35.00567 * 9 8 7 34 34 H 1.09008 * 109.47102 * 299.99803 * 10 9 8 35 35 H 1.08998 * 109.47173 * 59.99446 * 10 9 8 36 36 H 1.08998 * 109.46727 * 299.99756 * 11 10 9 37 37 H 1.08999 * 109.46952 * 180.02562 * 11 10 9 38 38 H 1.08998 * 109.47189 * 60.00446 * 12 11 10 39 39 H 0.96994 * 119.99675 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47265 * 300.00408 * 21 12 11 41 41 H 1.09002 * 109.47432 * 179.97438 * 21 12 11 42 42 H 1.08996 * 109.47218 * 300.00263 * 22 9 8 43 43 H 1.08998 * 109.47087 * 60.00304 * 22 9 8 44 44 H 1.07999 * 126.59305 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 0.0037 5 6 3.5461 -0.6505 -0.0036 6 6 4.7890 -1.5026 -0.0083 7 6 5.6775 -1.1022 -1.1878 8 7 6.8893 -1.9324 -1.1919 9 6 7.7680 -1.5756 -2.3138 10 6 7.3255 -2.3309 -3.5685 11 6 8.2411 -1.9598 -4.7369 12 6 9.6832 -2.3394 -4.3951 13 6 10.5851 -1.9732 -5.5456 14 1 11.3930 -1.2722 -5.3966 15 6 10.3788 -2.5333 -6.7886 16 7 9.3947 -3.3866 -6.9702 17 14 11.4972 -2.0800 -8.2145 18 1 12.6484 -3.0169 -8.2579 19 1 10.7374 -2.1699 -9.4872 20 1 11.9946 -0.6927 -8.0318 21 6 10.1259 -1.5839 -3.1404 22 6 9.2105 -1.9547 -1.9724 23 6 2.2772 -1.1018 -0.0060 24 1 -0.3633 -0.0055 1.0277 25 1 -0.3633 0.8928 -0.5090 26 1 -0.3634 -0.8872 -0.5187 27 1 1.9335 2.1144 -0.0004 28 1 5.3343 -1.3549 0.9239 29 1 4.5099 -2.5520 -0.1035 30 1 5.1322 -1.2499 -2.1199 31 1 5.9566 -0.0529 -1.0924 32 1 7.3787 -1.8622 -0.3123 33 1 7.7078 -0.5025 -2.4955 34 1 7.3858 -3.4040 -3.3869 35 1 6.2978 -2.0608 -3.8117 36 1 8.1811 -0.8867 -4.9187 37 1 7.9254 -2.4976 -5.6308 38 1 9.7432 -3.4124 -4.2133 39 1 9.2494 -3.7803 -7.8446 40 1 10.0659 -0.5109 -3.3222 41 1 11.1532 -1.8547 -2.8966 42 1 9.5258 -1.4166 -1.0785 43 1 9.2708 -3.0278 -1.7907 44 1 1.9612 -2.1345 -0.0113 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:06 Heat of formation + Delta-G solvation = 18.668486 kcal Electronic energy + Delta-G solvation = -21065.646770 eV Core-core repulsion = 18016.963800 eV Total energy + Delta-G solvation = -3048.682970 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.92346 -39.73687 -36.90657 -35.22283 -34.26637 -32.43947 -31.38594 -30.31998 -28.83990 -27.21456 -25.93493 -23.86401 -23.03704 -22.11073 -21.83798 -20.90714 -20.30647 -18.38309 -17.86171 -16.79386 -16.59076 -16.48641 -15.99019 -15.63991 -15.21067 -14.92572 -14.80769 -14.64505 -14.45624 -14.06583 -13.64342 -13.62702 -13.37664 -13.11701 -12.95545 -12.88812 -12.66298 -12.44521 -12.34483 -12.01085 -11.95373 -11.80208 -11.65236 -11.15021 -10.84008 -10.70956 -10.50266 -10.42705 -10.34225 -9.32594 -9.25280 -8.05076 -6.19312 1.15994 1.41187 1.41568 1.52045 2.02873 2.16985 2.44815 3.19239 3.23894 3.75664 3.97058 3.98189 4.07705 4.11950 4.29644 4.38959 4.42863 4.47540 4.50590 4.61323 4.69167 4.74299 4.78240 4.82060 4.87190 4.89943 4.98087 5.01625 5.16018 5.19899 5.21497 5.34701 5.39912 5.44316 5.50853 5.63742 5.72864 5.83107 6.06080 6.15036 6.22472 6.36975 6.44090 6.61775 6.93688 7.20284 7.48298 8.98942 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031181 B = 0.002848 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.767119 B = 9829.020569 C =10266.615041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.464 5.464 3 C 0.174 3.826 4 N -0.536 5.536 5 C -0.027 4.027 6 C -0.020 4.020 7 C 0.080 3.920 8 N -0.684 5.684 9 C 0.102 3.898 10 C -0.090 4.090 11 C -0.100 4.100 12 C 0.045 3.955 13 C -0.535 4.535 14 H 0.051 0.949 15 C 0.010 3.990 16 N -0.917 5.917 17 Si 0.953 3.047 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.269 1.269 21 C -0.100 4.100 22 C -0.106 4.106 23 C -0.052 4.052 24 H 0.090 0.910 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.233 0.767 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.018 0.982 32 H 0.347 0.653 33 H 0.028 0.972 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.020 0.980 37 H 0.057 0.943 38 H -0.006 1.006 39 H 0.259 0.741 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.254 5.799 16.600 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.146 5.146 3 C -0.108 4.108 4 N -0.256 5.256 5 C -0.156 4.156 6 C -0.059 4.059 7 C -0.050 4.050 8 N -0.316 5.316 9 C -0.008 4.008 10 C -0.128 4.128 11 C -0.139 4.139 12 C 0.027 3.973 13 C -0.573 4.573 14 H 0.069 0.931 15 C -0.189 4.189 16 N -0.557 5.557 17 Si 0.779 3.221 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.139 4.139 22 C -0.144 4.144 23 C -0.186 4.186 24 H 0.109 0.891 25 H 0.124 0.876 26 H 0.115 0.885 27 H 0.249 0.751 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.166 0.834 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.012 0.988 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -19.140 5.686 16.149 25.680 hybrid contribution 0.239 0.494 -0.929 1.079 sum -18.902 6.180 15.220 25.042 Atomic orbital electron populations 1.22360 0.73837 1.06257 1.04926 1.45666 1.09265 1.06205 1.53469 1.25563 0.85021 0.95149 1.05114 1.70094 1.21642 1.12562 1.21302 1.20846 0.95061 0.90685 1.09024 1.19703 0.90815 0.97822 0.97542 1.21709 0.91068 0.93739 0.98469 1.60470 1.07849 1.57139 1.06117 1.21333 0.92132 0.96194 0.91133 1.21411 0.97521 0.99452 0.94415 1.21406 0.96865 0.97807 0.97828 1.18628 0.92622 0.93858 0.92222 1.21649 1.14314 1.25673 0.95690 0.93106 1.25774 0.96759 0.95063 1.01271 1.70036 1.31403 1.30630 1.23617 0.85639 0.78966 0.78740 0.78805 1.20051 1.20911 1.19401 1.21467 0.98087 0.99200 0.95112 1.21609 0.93357 1.01575 0.97852 1.22867 0.90345 0.94006 1.11389 0.89123 0.87621 0.88545 0.75080 0.90875 0.88998 0.93184 0.96365 0.83412 0.95378 0.93329 0.93972 0.96092 0.92405 0.98771 0.93150 0.93756 0.93056 0.90682 0.91926 0.78597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 11.18 127.77 1.43 1.73 16 2 N -0.46 -6.87 3.15 -552.51 -1.74 -8.61 16 3 C 0.17 3.23 12.56 180.26 2.26 5.49 16 4 N -0.54 -14.39 11.23 -188.32 -2.12 -16.51 16 5 C -0.03 -0.67 6.36 41.39 0.26 -0.41 16 6 C -0.02 -0.48 6.04 29.85 0.18 -0.30 16 7 C 0.08 2.33 5.45 86.31 0.47 2.80 16 8 N -0.68 -20.59 6.31 -491.59 -3.10 -23.69 16 9 C 0.10 3.67 2.49 44.91 0.11 3.78 16 10 C -0.09 -3.80 5.43 30.59 0.17 -3.64 16 11 C -0.10 -5.09 4.98 30.59 0.15 -4.94 16 12 C 0.05 2.37 2.10 -11.54 -0.02 2.35 16 13 C -0.54 -30.79 8.56 25.60 0.22 -30.57 16 14 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 15 C 0.01 0.55 5.30 84.66 0.45 1.00 16 16 N -0.92 -55.02 11.32 21.45 0.24 -54.78 16 17 Si 0.95 45.10 29.54 68.60 2.03 47.13 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 21 C -0.10 -4.32 5.14 30.58 0.16 -4.16 16 22 C -0.11 -3.75 5.19 30.58 0.16 -3.59 16 23 C -0.05 -0.97 11.46 83.09 0.95 -0.02 16 24 H 0.09 0.18 8.14 -2.39 -0.02 0.17 16 25 H 0.11 0.11 8.14 -2.38 -0.02 0.09 16 26 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.23 2.39 8.06 -2.91 -0.02 2.37 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 1.94 8.11 -2.39 -0.02 1.92 16 30 H 0.05 1.64 7.44 -2.39 -0.02 1.62 16 31 H 0.02 0.59 8.06 -2.39 -0.02 0.57 16 32 H 0.35 8.99 8.35 -89.69 -0.75 8.24 16 33 H 0.03 1.07 7.80 -2.39 -0.02 1.06 16 34 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.04 1.72 7.45 -2.39 -0.02 1.70 16 36 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 38 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 40 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.07 2.20 8.12 -2.39 -0.02 2.18 16 43 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.20 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -72.07 350.10 2.47 -69.60 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.21 Total: 17.33 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 6.95 Total: -30.48 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -6.72 Total: -103.58 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -72.07 2.47 -69.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.264 kcal (2) G-P(sol) polarization free energy of solvation -72.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds