Wall clock time and date at job start Mon Mar 30 2020 02:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47230 * 2 1 4 4 C 1.34950 * 126.03840 * 124.97454 * 3 2 1 5 5 C 1.35309 * 107.74554 * 179.75313 * 4 3 2 6 6 C 1.39875 * 107.92083 * 0.39104 * 5 4 3 7 7 C 1.50698 * 125.89995 * 179.86536 * 6 5 4 8 8 N 1.46900 * 109.47212 * 94.71629 * 7 6 5 9 9 C 1.46901 * 110.99890 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46769 * 204.99887 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47317 * 59.99960 * 11 10 9 13 13 C 1.50706 * 109.46953 * 60.00071 * 12 11 10 14 14 H 1.07998 * 119.99823 * 240.00260 * 13 12 11 15 15 C 1.37879 * 119.99661 * 60.00040 * 13 12 11 16 16 N 1.31510 * 120.00409 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99651 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47104 * 90.00232 * 17 15 13 19 19 H 1.48495 * 109.47249 * 209.99979 * 17 15 13 20 20 H 1.48499 * 109.47293 * 329.99987 * 17 15 13 21 21 C 1.53005 * 109.47159 * 300.00546 * 12 11 10 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 12 11 23 23 N 1.30834 * 108.19918 * 359.60500 * 6 5 4 24 24 H 1.09003 * 109.47102 * 299.99763 * 1 2 3 25 25 H 1.08998 * 109.47095 * 60.00266 * 1 2 3 26 26 H 1.08999 * 109.47360 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47108 * 239.99775 * 2 1 3 28 28 H 1.08998 * 109.47095 * 119.99733 * 2 1 3 29 29 H 1.07996 * 126.12417 * 359.97438 * 4 3 2 30 30 H 1.07997 * 126.04199 * 180.27720 * 5 4 3 31 31 H 1.09005 * 109.46887 * 334.71949 * 7 6 5 32 32 H 1.09002 * 109.47143 * 214.72026 * 7 6 5 33 33 H 1.00898 * 110.99796 * 303.95798 * 8 7 6 34 34 H 1.08992 * 109.47407 * 325.00184 * 9 8 7 35 35 H 1.09002 * 109.47398 * 300.00295 * 10 9 8 36 36 H 1.09001 * 109.47194 * 60.00475 * 10 9 8 37 37 H 1.08996 * 109.47853 * 180.02562 * 11 10 9 38 38 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 39 39 H 1.09000 * 109.47486 * 180.02562 * 12 11 10 40 40 H 0.96998 * 120.00365 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.46935 * 299.99411 * 21 12 11 42 42 H 1.09001 * 109.46812 * 179.97438 * 21 12 11 43 43 H 1.08993 * 109.47194 * 179.97438 * 22 21 12 44 44 H 1.09002 * 109.46695 * 59.99734 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8727 1.9213 0.8942 5 6 3.0758 3.2121 0.5430 6 6 2.3126 3.4724 -0.5999 7 6 2.2361 4.7881 -1.3307 8 7 3.2006 4.7896 -2.4387 9 6 3.1545 6.0599 -3.1751 10 6 3.6481 5.8379 -4.6062 11 6 3.6007 7.1610 -5.3730 12 6 4.4983 8.1862 -4.6771 13 6 5.9153 7.6741 -4.6461 14 1 6.4139 7.5221 -3.7002 15 6 6.5751 7.3996 -5.8252 16 7 5.9681 7.5851 -6.9770 17 14 8.3313 6.7642 -5.7867 18 1 8.3197 5.2800 -5.7370 19 1 9.0470 7.2130 -7.0079 20 1 9.0233 7.2943 -4.5844 21 6 4.0047 8.4081 -3.2460 22 6 4.0521 7.0850 -2.4792 23 7 1.6809 2.3747 -0.9282 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.3177 1.4130 1.7368 30 1 3.7129 3.9174 1.0557 31 1 2.4719 5.6000 -0.6427 32 1 1.2294 4.9267 -1.7250 33 1 4.1338 4.5984 -2.1061 34 1 2.1295 6.4298 -3.1975 35 1 4.6731 5.4679 -4.5837 36 1 3.0088 5.1073 -5.1018 37 1 3.9519 7.0029 -6.3926 38 1 2.5758 7.5314 -5.3954 39 1 4.4642 9.1290 -5.2231 40 1 6.4321 7.3916 -7.8065 41 1 2.9798 8.7785 -3.2684 42 1 4.6445 9.1381 -2.7501 43 1 3.7010 7.2432 -1.4596 44 1 5.0771 6.7146 -2.4568 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:16 Heat of formation + Delta-G solvation = 58.063881 kcal Electronic energy + Delta-G solvation = -21583.542936 eV Core-core repulsion = 18536.568279 eV Total energy + Delta-G solvation = -3046.974657 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.16438 -38.15714 -35.38105 -34.11308 -32.04742 -30.57998 -29.67182 -29.39666 -28.07858 -25.52053 -24.26158 -22.94667 -21.40241 -21.10222 -20.52906 -19.63828 -18.59329 -17.11014 -15.86908 -15.59653 -15.06215 -14.69413 -14.52669 -14.40779 -13.89128 -13.59585 -13.38814 -13.22796 -12.84378 -12.58000 -12.55028 -12.33259 -11.95907 -11.64294 -11.48938 -11.36327 -11.15480 -10.90961 -10.83683 -10.49971 -10.44837 -10.18166 -10.03617 -9.51925 -9.33854 -9.08182 -8.88356 -8.58024 -8.55193 -8.18755 -7.78910 -5.88699 -3.92782 1.89265 2.44351 2.80322 3.35736 3.42761 3.44915 4.27079 4.51269 4.64832 4.67189 4.76167 4.89863 4.96182 5.23241 5.36993 5.41946 5.47484 5.60514 5.68234 5.77107 5.81163 5.84304 5.85751 6.07393 6.14066 6.30914 6.56494 6.63713 6.66838 6.71903 6.82989 6.88247 6.95799 6.99032 7.09292 7.28527 7.45431 7.66894 7.71952 7.77668 7.82964 7.89899 8.05295 8.26849 8.57613 9.09296 9.70073 11.17219 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.003602 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.410623 B = 7771.802348 C = 8108.928071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.378 5.378 4 C 0.047 3.953 5 C -0.268 4.268 6 C 0.082 3.918 7 C 0.139 3.861 8 N -0.679 5.679 9 C 0.096 3.904 10 C -0.085 4.085 11 C -0.108 4.108 12 C 0.043 3.957 13 C -0.499 4.499 14 H 0.053 0.947 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.883 3.117 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.103 4.103 22 C -0.133 4.133 23 N -0.273 5.273 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.169 0.831 30 H 0.144 0.856 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.341 0.659 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.038 0.962 37 H 0.091 0.909 38 H 0.012 0.988 39 H 0.023 0.977 40 H 0.258 0.742 41 H 0.032 0.968 42 H 0.043 0.957 43 H 0.033 0.967 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.560 -12.232 15.563 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 N -0.161 5.161 4 C -0.099 4.099 5 C -0.298 4.298 6 C -0.085 4.085 7 C 0.008 3.992 8 N -0.310 5.310 9 C -0.013 4.013 10 C -0.123 4.123 11 C -0.146 4.146 12 C 0.025 3.975 13 C -0.538 4.538 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.712 3.288 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.141 4.141 22 C -0.172 4.172 23 N -0.096 5.096 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.187 0.813 30 H 0.162 0.838 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.159 0.841 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.109 0.891 38 H 0.031 0.969 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.819 -13.302 14.128 21.747 hybrid contribution 2.121 0.452 1.324 2.540 sum -7.698 -12.850 15.452 21.521 Atomic orbital electron populations 1.22050 0.93911 1.02667 1.03654 1.21629 0.96019 0.77793 1.03518 1.48764 1.35940 1.10113 1.21259 1.22466 0.96010 0.94995 0.96426 1.21434 1.09470 0.96776 1.02086 1.22298 0.96082 0.95056 0.95054 1.20223 0.98411 0.88940 0.91661 1.60670 1.10154 1.35124 1.25006 1.21635 0.98326 0.86274 0.95094 1.21296 1.01030 0.97933 0.92060 1.21523 0.95685 0.94854 1.02555 1.18698 0.94280 0.95072 0.89480 1.21130 0.97608 1.43017 0.92005 0.92849 1.24926 0.97417 0.95858 0.95725 1.69865 1.36657 1.49349 0.97143 0.86736 0.85600 0.79192 0.77319 1.20775 1.21443 1.20121 1.21497 0.98169 0.95183 0.99254 1.22103 1.00864 0.97615 0.96634 1.77354 1.23733 0.96427 1.12062 0.92240 0.90912 0.90878 0.89858 0.88961 0.81339 0.83780 0.93464 0.90091 0.84149 0.91933 0.91250 0.94367 0.89079 0.96899 0.95922 0.93215 0.94896 0.93770 0.94869 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 10.10 37.16 0.38 -0.83 16 2 C 0.13 1.02 7.23 -4.04 -0.03 0.99 16 3 N -0.38 -4.46 3.68 -61.37 -0.23 -4.68 16 4 C 0.05 0.49 11.45 -17.22 -0.20 0.29 16 5 C -0.27 -3.31 10.74 -40.01 -0.43 -3.74 16 6 C 0.08 1.20 6.73 -82.41 -0.55 0.65 16 7 C 0.14 2.04 6.04 -4.98 -0.03 2.01 16 8 N -0.68 -11.47 6.24 -107.99 -0.67 -12.15 16 9 C 0.10 1.77 2.47 -67.71 -0.17 1.61 16 10 C -0.09 -1.85 5.31 -26.73 -0.14 -1.99 16 11 C -0.11 -2.56 5.23 -26.73 -0.14 -2.70 16 12 C 0.04 1.06 2.59 -91.77 -0.24 0.83 16 13 C -0.50 -13.33 6.61 -34.44 -0.23 -13.56 16 14 H 0.05 1.42 6.71 -52.49 -0.35 1.06 16 15 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 16 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 17 Si 0.88 21.38 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.10 -2.13 5.41 -26.73 -0.14 -2.28 16 22 C -0.13 -2.50 4.94 -26.73 -0.13 -2.63 16 23 N -0.27 -4.17 12.42 33.67 0.42 -3.75 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.43 8.07 -51.93 -0.42 0.01 16 29 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 30 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.05 0.64 7.44 -51.93 -0.39 0.25 16 32 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 33 H 0.34 5.73 8.46 -39.29 -0.33 5.39 16 34 H 0.06 1.14 7.80 -51.93 -0.41 0.74 16 35 H 0.07 1.67 7.22 -51.93 -0.37 1.29 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.55 7.45 -51.93 -0.39 0.16 16 44 H 0.07 1.45 6.60 -51.93 -0.34 1.11 16 LS Contribution 346.25 15.07 5.22 5.22 Total: -1.00 -30.43 346.25 -9.33 -39.76 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.52 Total: 3.86 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -2.15 Total: -19.77 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.15 Total: -45.42 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.43 -9.33 -39.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.820 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds