Wall clock time and date at job start Mon Mar 30 2020 02:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48501 * 109.47192 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47319 * 300.00215 * 3 2 1 6 6 H 1.48508 * 109.46796 * 59.99912 * 3 2 1 7 7 C 1.37871 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00445 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99624 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47061 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46825 * 299.99238 * 11 10 9 13 13 N 1.46904 * 109.46904 * 180.02562 * 12 11 10 14 14 C 1.46899 * 111.00029 * 155.00222 * 13 12 11 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 C 1.29445 * 117.95944 * 94.73421 * 16 15 14 18 18 C 1.50064 * 124.07510 * 180.23874 * 17 16 15 19 19 C 1.53021 * 110.20116 * 343.31933 * 18 17 16 20 20 C 1.53389 * 108.43981 * 49.24895 * 19 18 17 21 21 C 1.50063 * 117.96220 * 275.00196 * 16 15 14 22 22 C 1.52993 * 109.47083 * 60.00406 * 12 11 10 23 23 C 1.52994 * 109.47250 * 299.99728 * 22 12 11 24 24 H 0.97007 * 119.99974 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47277 * 59.99627 * 9 7 2 26 26 H 1.08993 * 109.47557 * 59.98977 * 10 9 7 27 27 H 1.09008 * 109.46885 * 299.99222 * 10 9 7 28 28 H 1.09005 * 109.46987 * 179.97438 * 11 10 9 29 29 H 1.08998 * 109.47427 * 59.99785 * 11 10 9 30 30 H 1.08994 * 109.47263 * 300.00057 * 12 11 10 31 31 H 1.00908 * 110.99583 * 278.95135 * 13 12 11 32 32 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 33 33 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 34 34 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 35 35 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 36 36 H 1.07997 * 117.96619 * 0.47080 * 17 16 15 37 37 H 1.09003 * 109.48579 * 223.00126 * 18 17 16 38 38 H 1.08998 * 109.17933 * 103.44743 * 18 17 16 39 39 H 1.09001 * 109.64369 * 289.55944 * 19 18 17 40 40 H 1.09002 * 109.64259 * 168.93106 * 19 18 17 41 41 H 1.08997 * 109.64500 * 172.87838 * 20 19 18 42 42 H 1.08996 * 109.64287 * 52.24737 * 20 19 18 43 43 H 1.08998 * 109.36046 * 283.04538 * 21 16 15 44 44 H 1.08998 * 109.36106 * 42.77758 * 21 16 15 45 45 H 1.09004 * 109.47538 * 59.99823 * 22 12 11 46 46 H 1.09001 * 109.46997 * 179.97438 * 22 12 11 47 47 H 1.09007 * 109.47107 * 299.99989 * 23 22 12 48 48 H 1.09005 * 109.47279 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 6 0.6002 -5.0683 1.2470 13 7 -0.1339 -6.3407 1.2468 14 6 -0.5010 -6.7369 2.6129 15 6 -1.2627 -8.0632 2.5720 16 6 -1.6388 -8.4700 3.9734 17 6 -2.8148 -8.1439 4.4051 18 6 -3.3285 -8.4737 5.7759 19 6 -2.4701 -9.5689 6.4125 20 6 -0.9949 -9.1746 6.2678 21 6 -0.6245 -9.2225 4.7838 22 6 -0.3940 -3.9054 1.2468 23 6 0.3709 -2.5804 1.2473 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5562 -0.8919 26 1 2.8713 -3.6047 0.8889 27 1 2.8725 -3.6040 -0.8911 28 1 2.1885 -5.8156 -0.0023 29 1 0.8539 -5.0446 -0.8922 30 1 1.2265 -5.0107 2.1371 31 1 -0.9490 -6.2878 0.6542 32 1 0.4019 -6.8544 3.2121 33 1 -1.1340 -5.9683 3.0564 34 1 -2.1656 -7.9453 1.9728 35 1 -0.6302 -8.8320 2.1283 36 1 -3.4682 -7.6040 3.7358 37 1 -4.3599 -8.8189 5.7044 38 1 -3.2915 -7.5788 6.3971 39 1 -2.6479 -10.5161 5.9034 40 1 -2.7219 -9.6642 7.4688 41 1 -0.3720 -9.8755 6.8237 42 1 -0.8463 -8.1648 6.6501 43 1 -0.5949 -10.2604 4.4522 44 1 0.3574 -8.7703 4.6438 45 1 -1.0204 -3.9629 0.3566 46 1 -1.0212 -3.9635 2.1364 47 1 0.9973 -2.5228 2.1376 48 1 -0.3374 -1.7519 1.2477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:09 Heat of formation + Delta-G solvation = -35.310501 kcal Electronic energy + Delta-G solvation = -21619.568291 eV Core-core repulsion = 18672.084960 eV Total energy + Delta-G solvation = -2947.483331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.07548 -38.11791 -35.33648 -33.20639 -31.87208 -30.93901 -29.64417 -29.08951 -26.84451 -24.24946 -23.47267 -22.58675 -21.54953 -21.17633 -20.49428 -18.73622 -17.69556 -16.29120 -15.97473 -15.45899 -14.78000 -14.58797 -14.45667 -14.23429 -13.98705 -13.42998 -13.26006 -12.92035 -12.79761 -12.59093 -12.48733 -12.28299 -12.11269 -11.89509 -11.49935 -11.25984 -11.10680 -10.99232 -10.98281 -10.76048 -10.57889 -10.41892 -10.36916 -10.18411 -10.10185 -9.87268 -9.35278 -8.96606 -8.84653 -8.62549 -8.29643 -7.92986 -5.94458 -4.00397 2.12356 3.30987 3.39110 3.43279 4.32587 4.46876 4.49927 4.66686 4.69006 4.98503 5.15049 5.21052 5.24331 5.30773 5.34287 5.37658 5.43278 5.48403 5.61255 5.68188 5.69016 5.71831 5.76273 5.83456 5.92214 5.98828 6.08286 6.10444 6.12276 6.22534 6.34102 6.43072 6.46158 6.55386 6.69770 6.72046 6.86120 6.93123 6.97472 7.17161 7.26519 7.43389 7.57104 7.70462 7.79368 8.06989 8.19778 8.52224 9.04385 9.64129 11.10913 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.029872 B = 0.002919 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.121191 B = 9590.828918 C = 9962.584264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.109 4.109 11 C -0.100 4.100 12 C 0.091 3.909 13 N -0.691 5.691 14 C 0.066 3.934 15 C -0.086 4.086 16 C -0.114 4.114 17 C -0.162 4.162 18 C -0.089 4.089 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.083 4.083 22 C -0.142 4.142 23 C -0.105 4.105 24 H 0.258 0.742 25 H 0.024 0.976 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.336 0.664 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.037 0.963 47 H 0.031 0.969 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.134 -18.452 9.987 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.147 4.147 11 C -0.138 4.138 12 C -0.018 4.018 13 N -0.320 5.320 14 C -0.063 4.063 15 C -0.124 4.124 16 C -0.115 4.115 17 C -0.180 4.180 18 C -0.126 4.126 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.120 4.120 22 C -0.182 4.182 23 C -0.144 4.144 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.153 0.847 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.699 -18.721 9.971 21.725 hybrid contribution -0.399 1.697 0.176 1.752 sum -5.098 -17.024 10.146 20.463 Atomic orbital electron populations 1.69892 1.05849 1.26081 1.51265 1.24977 0.94834 0.98999 0.95318 0.86602 0.80212 0.84078 0.77491 1.19832 1.21108 1.21144 1.21300 0.92930 0.90822 1.49807 0.92760 1.18658 0.92649 0.91599 0.94117 1.21630 0.98615 0.94414 1.00040 1.21484 0.97861 0.97847 0.96624 1.21619 0.95000 0.86224 0.98998 1.60719 1.28458 1.33022 1.09782 1.21877 0.98739 0.94776 0.90939 1.20735 1.00387 0.97763 0.93469 1.20824 0.95300 0.99188 0.96184 1.21906 0.96880 1.01747 0.97480 1.20410 0.99061 0.98756 0.94329 1.21599 0.95256 0.98600 1.00300 1.21612 0.96254 1.01789 0.96188 1.20396 0.97879 0.99769 0.93968 1.22271 0.98116 0.98070 0.99695 1.21548 0.99452 0.94586 0.98775 0.93227 0.95810 0.93581 0.93402 0.93141 0.92848 0.91367 0.84676 0.91391 0.95327 0.91763 0.90685 0.88064 0.91368 0.91125 0.91879 0.91937 0.91798 0.91707 0.91030 0.90866 0.92874 0.94418 0.94985 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 11.32 55.43 0.63 -25.03 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.15 8.56 -34.44 -0.29 -14.44 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.20 2.10 -91.77 -0.19 1.01 16 10 C -0.11 -2.30 5.14 -26.73 -0.14 -2.44 16 11 C -0.10 -1.81 5.53 -26.73 -0.15 -1.96 16 12 C 0.09 1.57 2.47 -67.72 -0.17 1.40 16 13 N -0.69 -10.12 6.25 -106.73 -0.67 -10.78 16 14 C 0.07 0.86 5.47 -3.83 -0.02 0.84 16 15 C -0.09 -0.94 5.48 -27.89 -0.15 -1.09 16 16 C -0.11 -1.17 5.09 -100.94 -0.51 -1.68 16 17 C -0.16 -1.62 9.37 -35.90 -0.34 -1.96 16 18 C -0.09 -0.75 6.11 -28.18 -0.17 -0.92 16 19 C -0.12 -0.92 6.01 -26.52 -0.16 -1.08 16 20 C -0.12 -0.98 6.01 -26.51 -0.16 -1.14 16 21 C -0.08 -0.75 5.80 -28.18 -0.16 -0.91 16 22 C -0.14 -2.76 5.17 -26.74 -0.14 -2.90 16 23 C -0.10 -2.48 4.98 -26.73 -0.13 -2.62 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.05 1.00 8.14 -51.92 -0.42 0.57 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.22 7.80 -51.93 -0.40 0.82 16 31 H 0.34 4.73 8.47 -39.29 -0.33 4.40 16 32 H 0.07 0.91 8.03 -51.93 -0.42 0.49 16 33 H 0.03 0.40 7.44 -51.93 -0.39 0.02 16 34 H 0.06 0.69 7.80 -51.93 -0.41 0.28 16 35 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 36 H 0.10 1.02 7.74 -52.49 -0.41 0.62 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.57 8.12 -51.93 -0.42 0.14 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 45 H 0.05 1.05 8.13 -51.93 -0.42 0.62 16 46 H 0.04 0.69 7.45 -51.93 -0.39 0.30 16 47 H 0.03 0.76 8.14 -51.92 -0.42 0.33 16 48 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -27.90 364.04 -11.91 -39.81 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -9.35 Total: 2.38 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: -2.98 Total: -28.33 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.04 Total: -35.81 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.90 -11.91 -39.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.504 kcal (2) G-P(sol) polarization free energy of solvation -27.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds