Wall clock time and date at job start Mon Mar 30 2020 02:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48501 * 109.47192 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47319 * 300.00215 * 3 2 1 6 6 H 1.48508 * 109.46796 * 59.99912 * 3 2 1 7 7 C 1.37871 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00445 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99624 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47061 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46825 * 299.99238 * 11 10 9 13 13 N 1.46904 * 109.46904 * 180.02562 * 12 11 10 14 14 C 1.46899 * 111.00029 * 155.00222 * 13 12 11 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 C 1.29445 * 117.95944 * 94.73421 * 16 15 14 18 18 C 1.50064 * 124.07510 * 180.23874 * 17 16 15 19 19 C 1.53021 * 110.20116 * 343.31933 * 18 17 16 20 20 C 1.53389 * 108.43981 * 49.24895 * 19 18 17 21 21 C 1.50063 * 117.96220 * 275.00196 * 16 15 14 22 22 C 1.52993 * 109.47083 * 60.00406 * 12 11 10 23 23 C 1.52994 * 109.47250 * 299.99728 * 22 12 11 24 24 H 0.97007 * 119.99974 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47277 * 59.99627 * 9 7 2 26 26 H 1.08993 * 109.47557 * 59.98977 * 10 9 7 27 27 H 1.09008 * 109.46885 * 299.99222 * 10 9 7 28 28 H 1.09005 * 109.46987 * 179.97438 * 11 10 9 29 29 H 1.08998 * 109.47427 * 59.99785 * 11 10 9 30 30 H 1.08994 * 109.47263 * 300.00057 * 12 11 10 31 31 H 1.00908 * 110.99583 * 278.95135 * 13 12 11 32 32 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 33 33 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 34 34 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 35 35 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 36 36 H 1.07997 * 117.96619 * 0.47080 * 17 16 15 37 37 H 1.09003 * 109.48579 * 223.00126 * 18 17 16 38 38 H 1.08998 * 109.17933 * 103.44743 * 18 17 16 39 39 H 1.09001 * 109.64369 * 289.55944 * 19 18 17 40 40 H 1.09002 * 109.64259 * 168.93106 * 19 18 17 41 41 H 1.08997 * 109.64500 * 172.87838 * 20 19 18 42 42 H 1.08996 * 109.64287 * 52.24737 * 20 19 18 43 43 H 1.08998 * 109.36046 * 283.04538 * 21 16 15 44 44 H 1.08998 * 109.36106 * 42.77758 * 21 16 15 45 45 H 1.09004 * 109.47538 * 59.99823 * 22 12 11 46 46 H 1.09001 * 109.46997 * 179.97438 * 22 12 11 47 47 H 1.09007 * 109.47107 * 299.99989 * 23 22 12 48 48 H 1.09005 * 109.47279 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 6 0.6002 -5.0683 1.2470 13 7 -0.1339 -6.3407 1.2468 14 6 -0.5010 -6.7369 2.6129 15 6 -1.2627 -8.0632 2.5720 16 6 -1.6388 -8.4700 3.9734 17 6 -2.8148 -8.1439 4.4051 18 6 -3.3285 -8.4737 5.7759 19 6 -2.4701 -9.5689 6.4125 20 6 -0.9949 -9.1746 6.2678 21 6 -0.6245 -9.2225 4.7838 22 6 -0.3940 -3.9054 1.2468 23 6 0.3709 -2.5804 1.2473 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5562 -0.8919 26 1 2.8713 -3.6047 0.8889 27 1 2.8725 -3.6040 -0.8911 28 1 2.1885 -5.8156 -0.0023 29 1 0.8539 -5.0446 -0.8922 30 1 1.2265 -5.0107 2.1371 31 1 -0.9490 -6.2878 0.6542 32 1 0.4019 -6.8544 3.2121 33 1 -1.1340 -5.9683 3.0564 34 1 -2.1656 -7.9453 1.9728 35 1 -0.6302 -8.8320 2.1283 36 1 -3.4682 -7.6040 3.7358 37 1 -4.3599 -8.8189 5.7044 38 1 -3.2915 -7.5788 6.3971 39 1 -2.6479 -10.5161 5.9034 40 1 -2.7219 -9.6642 7.4688 41 1 -0.3720 -9.8755 6.8237 42 1 -0.8463 -8.1648 6.6501 43 1 -0.5949 -10.2604 4.4522 44 1 0.3574 -8.7703 4.6438 45 1 -1.0204 -3.9629 0.3566 46 1 -1.0212 -3.9635 2.1364 47 1 0.9973 -2.5228 2.1376 48 1 -0.3374 -1.7519 1.2477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:08 Heat of formation + Delta-G solvation = -48.128124 kcal Electronic energy + Delta-G solvation = -21620.124105 eV Core-core repulsion = 18672.084960 eV Total energy + Delta-G solvation = -2948.039145 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.02747 -39.45456 -36.69477 -34.72313 -33.32305 -31.61977 -31.33579 -30.53902 -28.14720 -25.99951 -24.26082 -23.57952 -23.16012 -22.19255 -21.94473 -20.46152 -18.41085 -18.39758 -16.89903 -16.75199 -16.48696 -15.70708 -15.59342 -15.20718 -14.88801 -14.79038 -14.61831 -14.41173 -14.05357 -14.03724 -13.43122 -13.36176 -13.34362 -12.99572 -12.92954 -12.83593 -12.64027 -12.52110 -12.23013 -12.01948 -12.00620 -11.79522 -11.68731 -11.62765 -11.26616 -11.19639 -11.00388 -10.77889 -10.58103 -10.38238 -9.61356 -9.26603 -8.07580 -6.21781 1.34376 1.38481 1.40446 1.51825 2.42945 3.17448 3.22051 3.79021 3.89561 3.92208 4.07162 4.11508 4.17271 4.37032 4.40872 4.42563 4.49161 4.53680 4.60036 4.66533 4.68513 4.72556 4.77772 4.79989 4.84696 4.91093 4.97950 5.02874 5.07515 5.10303 5.16419 5.18343 5.22217 5.24555 5.32864 5.37258 5.40293 5.46271 5.47870 5.60719 5.67971 5.80202 6.03747 6.12564 6.18023 6.19868 6.41701 6.50273 6.91444 7.46262 8.96022 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.029872 B = 0.002919 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.121191 B = 9590.828918 C = 9962.584264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.102 4.102 11 C -0.092 4.092 12 C 0.102 3.898 13 N -0.683 5.683 14 C 0.070 3.930 15 C -0.077 4.077 16 C -0.123 4.123 17 C -0.167 4.167 18 C -0.091 4.091 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.084 4.084 22 C -0.131 4.131 23 C -0.097 4.097 24 H 0.259 0.741 25 H -0.008 1.008 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.341 0.659 32 H 0.067 0.933 33 H 0.018 0.982 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.024 0.976 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.812 -19.871 10.793 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.069 0.931 9 C 0.027 3.973 10 C -0.140 4.140 11 C -0.130 4.130 12 C -0.008 4.008 13 N -0.312 5.312 14 C -0.060 4.060 15 C -0.115 4.115 16 C -0.124 4.124 17 C -0.185 4.185 18 C -0.128 4.128 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.121 4.121 22 C -0.170 4.170 23 C -0.136 4.136 24 H 0.068 0.932 25 H 0.010 0.990 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.159 0.841 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.043 0.957 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.378 -20.156 10.776 23.271 hybrid contribution -0.533 2.153 -0.085 2.220 sum -4.910 -18.003 10.691 21.506 Atomic orbital electron populations 1.70033 1.07140 1.26857 1.51731 1.25754 0.95687 1.02378 0.95011 0.85602 0.79161 0.79916 0.77561 1.19154 1.20652 1.20678 1.21682 0.93037 0.92440 1.49972 0.93122 1.18635 0.93098 0.92416 0.93189 1.21503 0.97909 0.94569 1.00035 1.21387 0.98065 0.96594 0.96936 1.21401 0.94448 0.86452 0.98492 1.60691 1.28793 1.30838 1.10891 1.21891 0.98764 0.95564 0.89744 1.20640 1.00139 0.96513 0.94206 1.20899 0.95768 0.99763 0.95975 1.22082 0.96843 1.01341 0.98240 1.20461 0.99767 0.99125 0.93427 1.21601 0.94683 0.98256 1.01020 1.21621 0.96889 1.01678 0.95655 1.20423 0.97251 0.99972 0.94437 1.22139 0.98245 0.96727 0.99916 1.21339 0.98679 0.95840 0.97775 0.93197 0.98988 0.93509 0.93441 0.91012 0.92998 0.91537 0.84065 0.91478 0.96351 0.91589 0.90390 0.88548 0.90412 0.91196 0.91657 0.90712 0.90527 0.92571 0.90229 0.91248 0.93380 0.93408 0.95684 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.03 11.32 21.44 0.24 -53.79 16 2 C 0.01 0.55 5.30 84.65 0.45 1.00 16 3 Si 0.95 44.42 29.54 68.60 2.03 46.44 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 7 C -0.53 -30.07 8.56 25.60 0.22 -29.85 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 9 C 0.05 2.30 2.10 -11.54 -0.02 2.27 16 10 C -0.10 -4.27 5.14 30.59 0.16 -4.12 16 11 C -0.09 -3.19 5.53 30.59 0.17 -3.02 16 12 C 0.10 3.38 2.47 44.91 0.11 3.50 16 13 N -0.68 -18.73 6.25 -491.59 -3.07 -21.80 16 14 C 0.07 1.70 5.47 86.30 0.47 2.17 16 15 C -0.08 -1.56 5.48 29.85 0.16 -1.40 16 16 C -0.12 -2.34 5.09 -15.10 -0.08 -2.42 16 17 C -0.17 -3.12 9.37 27.03 0.25 -2.87 16 18 C -0.09 -1.39 6.11 29.66 0.18 -1.21 16 19 C -0.12 -1.57 6.01 30.73 0.18 -1.38 16 20 C -0.12 -1.74 6.01 30.73 0.18 -1.56 16 21 C -0.08 -1.37 5.80 29.66 0.17 -1.20 16 22 C -0.13 -5.05 5.17 30.59 0.16 -4.89 16 23 C -0.10 -4.71 4.98 30.59 0.15 -4.56 16 24 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 25 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 2.27 7.80 -2.39 -0.02 2.26 16 31 H 0.34 8.98 8.47 -89.69 -0.76 8.22 16 32 H 0.07 1.67 8.03 -2.39 -0.02 1.65 16 33 H 0.02 0.49 7.44 -2.39 -0.02 0.47 16 34 H 0.07 1.31 7.80 -2.39 -0.02 1.29 16 35 H 0.08 1.54 8.11 -2.39 -0.02 1.52 16 36 H 0.10 1.86 7.74 -2.91 -0.02 1.83 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 0.85 8.12 -2.39 -0.02 0.83 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 42 H 0.06 0.90 8.12 -2.39 -0.02 0.88 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.18 8.11 -2.39 -0.02 1.16 16 45 H 0.05 1.89 8.13 -2.39 -0.02 1.87 16 46 H 0.05 1.73 7.45 -2.39 -0.02 1.71 16 47 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 48 H 0.05 3.05 6.07 -2.38 -0.01 3.04 16 Total: -1.00 -59.87 364.04 2.25 -57.62 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.13 Total: 21.06 kcal Atomic # 6 Polarization: -52.46 SS G_CDS: 2.93 Total: -49.53 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -2.83 Total: -75.59 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -59.87 2.25 -57.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.488 kcal (2) G-P(sol) polarization free energy of solvation -59.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds