Wall clock time and date at job start Mon Mar 30 2020 02:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47469 * 2 1 4 4 N 1.46905 * 109.46928 * 240.00310 * 2 1 3 5 5 C 1.46891 * 111.00178 * 86.08622 * 4 2 1 6 6 C 1.53007 * 109.47084 * 206.54324 * 5 4 2 7 7 C 1.52998 * 109.47009 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47193 * 60.00150 * 7 6 5 9 9 C 1.50704 * 109.47015 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99868 * 120.00200 * 9 8 7 11 11 C 1.37876 * 119.99738 * 299.99850 * 9 8 7 12 12 N 1.31507 * 120.00505 * 0.02562 * 11 9 8 13 13 Si 1.86809 * 119.99606 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47107 * 59.99890 * 13 11 9 15 15 H 1.48496 * 109.46967 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46963 * 299.99973 * 13 11 9 17 17 C 1.52994 * 109.46946 * 299.99699 * 8 7 6 18 18 C 1.53003 * 109.47099 * 86.54486 * 5 4 2 19 19 C 1.50699 * 109.47410 * 120.00245 * 2 1 3 20 20 C 1.39872 * 126.03987 * 79.99156 * 19 2 1 21 21 N 1.30830 * 108.20555 * 180.02562 * 20 19 2 22 22 N 1.40089 * 108.20465 * 0.02562 * 21 20 19 23 23 C 1.46500 * 126.04218 * 179.97438 * 22 21 20 24 24 C 1.34951 * 107.92680 * 359.97438 * 22 21 20 25 25 H 1.08997 * 109.47509 * 184.27135 * 1 2 3 26 26 H 1.09009 * 109.46947 * 304.27407 * 1 2 3 27 27 H 1.09000 * 109.47176 * 64.26915 * 1 2 3 28 28 H 1.00897 * 110.99757 * 210.04827 * 4 2 1 29 29 H 1.08997 * 109.47581 * 326.54215 * 5 4 2 30 30 H 1.08996 * 109.47195 * 299.99964 * 6 5 4 31 31 H 1.09004 * 109.46837 * 60.00283 * 6 5 4 32 32 H 1.08998 * 109.47692 * 300.00368 * 7 6 5 33 33 H 1.09005 * 109.47321 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.46757 * 60.00101 * 8 7 6 35 35 H 0.96999 * 119.99991 * 179.97438 * 12 11 9 36 36 H 1.08997 * 109.47720 * 299.99812 * 17 8 7 37 37 H 1.09002 * 109.47159 * 179.97438 * 17 8 7 38 38 H 1.08992 * 109.46996 * 300.00107 * 18 5 4 39 39 H 1.08997 * 109.46757 * 60.00135 * 18 5 4 40 40 H 1.08001 * 125.89580 * 0.02562 * 20 19 2 41 41 H 1.08999 * 109.47003 * 90.01579 * 23 22 21 42 42 H 1.08993 * 109.47328 * 210.02316 * 23 22 21 43 43 H 1.09009 * 109.46728 * 330.01856 * 23 22 21 44 44 H 1.07994 * 126.13264 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.1068 0.2287 -2.3404 6 6 1.9621 -0.5591 -3.6441 7 6 2.0535 0.4003 -4.8324 8 6 3.4094 1.1089 -4.8126 9 6 3.4998 2.0534 -5.9835 10 1 3.6457 3.1102 -5.8148 11 6 3.3961 1.5684 -7.2700 12 7 3.2180 0.2817 -7.4753 13 14 3.5088 2.7391 -8.7214 14 1 4.8250 3.4264 -8.7019 15 1 3.3678 1.9742 -9.9863 16 1 2.4225 3.7474 -8.6295 17 6 3.5541 1.8966 -3.5090 18 6 3.4624 0.9378 -2.3209 19 6 2.0324 -0.7104 1.2304 20 6 2.1214 -2.0957 1.4021 21 7 2.6017 -2.3295 2.5964 22 7 2.8334 -1.0985 3.2236 23 6 3.3688 -0.9063 4.5737 24 6 2.4762 -0.1209 2.3647 25 1 -0.3634 -1.0248 0.0765 26 1 -0.3633 0.5788 0.8493 27 1 -0.3633 0.4462 -0.9258 28 1 2.9089 -1.1355 -1.0236 29 1 1.3090 0.9681 -2.2723 30 1 2.7599 -1.2985 -3.7123 31 1 0.9962 -1.0642 -3.6580 32 1 1.2560 1.1401 -4.7645 33 1 1.9500 -0.1608 -5.7612 34 1 4.2070 0.3691 -4.8807 35 1 3.1448 -0.0594 -8.3804 36 1 2.7566 2.6364 -3.4410 37 1 4.5203 2.4011 -3.4947 38 1 3.5656 1.4989 -1.3922 39 1 4.2603 0.1983 -2.3891 40 1 1.8419 -2.8432 0.6744 41 1 4.4561 -0.8440 4.5278 42 1 2.9694 0.0161 4.9950 43 1 3.0793 -1.7483 5.2026 44 1 2.5343 0.9415 2.5493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:48 Heat of formation + Delta-G solvation = 56.810283 kcal Electronic energy + Delta-G solvation = -21664.443110 eV Core-core repulsion = 18617.414093 eV Total energy + Delta-G solvation = -3047.029017 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.32299 -38.29331 -35.66848 -33.32583 -32.50270 -30.81837 -29.65167 -29.19805 -27.48187 -26.69697 -24.24642 -22.50709 -21.43898 -21.25952 -20.25404 -19.82505 -18.72331 -16.97229 -16.26211 -15.61082 -15.25766 -14.99717 -14.50311 -14.35937 -13.88324 -13.45023 -13.13317 -13.06428 -12.79365 -12.75932 -12.60029 -12.28422 -12.13845 -11.70713 -11.58535 -11.41073 -11.14993 -10.92557 -10.67190 -10.50703 -10.41480 -10.24105 -10.11979 -9.73247 -9.51757 -9.30485 -8.87135 -8.66287 -8.46801 -8.22331 -7.91761 -5.91108 -3.97296 1.76333 2.38852 2.74170 3.35325 3.40147 3.42567 4.27549 4.48021 4.53164 4.72983 4.84889 4.97219 5.09199 5.24056 5.36961 5.37891 5.48603 5.57188 5.67782 5.71186 5.79607 5.94734 6.01309 6.11840 6.22446 6.38620 6.46619 6.48349 6.58898 6.59893 6.72199 6.80321 6.84374 6.86953 6.98536 7.21421 7.36158 7.49886 7.61429 7.64011 7.80035 7.83102 8.11027 8.26116 8.55249 9.06773 9.66869 11.14228 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.041090 B = 0.003211 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.271201 B = 8718.536742 C = 8887.975535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.162 3.838 3 H 0.045 0.955 4 N -0.680 5.680 5 C 0.092 3.908 6 C -0.101 4.101 7 C -0.109 4.109 8 C 0.049 3.951 9 C -0.514 4.514 10 H 0.052 0.948 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.888 3.112 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.278 1.278 17 C -0.104 4.104 18 C -0.141 4.141 19 C -0.233 4.233 20 C 0.069 3.931 21 N -0.304 5.304 22 N -0.382 5.382 23 C 0.104 3.896 24 C 0.054 3.946 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.339 0.661 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.091 0.909 34 H 0.023 0.977 35 H 0.259 0.741 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.039 0.961 39 H 0.055 0.945 40 H 0.187 0.813 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 -1.327 21.057 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.051 3.949 3 H 0.063 0.937 4 N -0.310 5.310 5 C -0.017 4.017 6 C -0.139 4.139 7 C -0.148 4.148 8 C 0.031 3.969 9 C -0.552 4.552 10 H 0.070 0.930 11 C -0.140 4.140 12 N -0.529 5.529 13 Si 0.716 3.284 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.142 4.142 18 C -0.180 4.180 19 C -0.244 4.244 20 C -0.117 4.117 21 N -0.125 5.125 22 N -0.164 5.164 23 C -0.038 4.038 24 C -0.092 4.092 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.157 0.843 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.110 0.890 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.203 0.797 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.778 -2.577 21.749 22.077 hybrid contribution 0.697 1.877 -1.085 2.277 sum -2.082 -0.701 20.664 20.781 Atomic orbital electron populations 1.21762 0.94403 1.01979 1.00841 1.19695 0.95041 0.94520 0.85672 0.93666 1.60797 1.33952 1.32245 1.04003 1.21680 0.96150 0.93193 0.90707 1.21562 1.00274 0.98352 0.93685 1.21613 0.98581 0.97293 0.97273 1.18639 0.93816 0.94203 0.90232 1.21210 1.49193 0.93872 0.90916 0.93016 1.24958 0.95306 0.94960 0.98746 1.69866 1.50012 1.12061 1.20926 0.86734 0.78506 0.81090 0.82085 1.20433 1.21357 1.20386 1.21556 0.99728 0.97385 0.95564 1.22213 0.97996 0.99412 0.98371 1.20239 1.12682 0.93752 0.97776 1.23809 0.97663 0.96189 0.94076 1.77368 1.22707 1.03216 1.09191 1.48438 1.50461 1.04048 1.13439 1.21805 0.99383 1.03443 0.79169 1.22297 1.00578 0.95295 0.91030 0.92256 0.93380 0.92393 0.84316 0.91226 0.93124 0.93350 0.95027 0.89027 0.95864 0.93068 0.93576 0.93829 0.94230 0.92672 0.79651 0.90911 0.89676 0.89455 0.81232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.41 37.16 0.35 -1.21 16 2 C 0.16 2.00 2.85 -68.86 -0.20 1.81 16 3 H 0.05 0.58 7.22 -51.93 -0.38 0.20 16 4 N -0.68 -9.64 5.87 -100.95 -0.59 -10.23 16 5 C 0.09 1.53 2.26 -67.71 -0.15 1.38 16 6 C -0.10 -1.95 5.53 -26.73 -0.15 -2.10 16 7 C -0.11 -2.56 4.98 -26.73 -0.13 -2.69 16 8 C 0.05 1.23 2.10 -91.77 -0.19 1.03 16 9 C -0.51 -14.19 8.56 -34.44 -0.29 -14.48 16 10 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 11 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 12 N -0.89 -25.55 11.32 55.43 0.63 -24.93 16 13 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C -0.10 -2.16 5.14 -26.76 -0.14 -2.30 16 18 C -0.14 -2.45 5.15 -26.75 -0.14 -2.58 16 19 C -0.23 -2.74 4.81 -105.05 -0.51 -3.24 16 20 C 0.07 0.85 11.44 -17.37 -0.20 0.66 16 21 N -0.30 -3.95 12.58 30.62 0.39 -3.56 16 22 N -0.38 -4.01 4.01 -68.16 -0.27 -4.28 16 23 C 0.10 0.62 11.47 59.85 0.69 1.31 16 24 C 0.05 0.56 11.40 -17.22 -0.20 0.36 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.06 0.73 7.49 -51.93 -0.39 0.34 16 28 H 0.34 4.80 7.83 -39.29 -0.31 4.49 16 29 H 0.07 1.19 7.18 -51.93 -0.37 0.82 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 34 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.62 7.56 -51.93 -0.39 0.23 16 39 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 40 H 0.19 2.09 8.06 -52.49 -0.42 1.66 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -30.31 348.24 -8.59 -38.90 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.61 Total: 2.89 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -1.35 Total: -20.45 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.15 Total: -43.00 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.31 -8.59 -38.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.709 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds