Wall clock time and date at job start Mon Mar 30 2020 02:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47469 * 2 1 4 4 N 1.46905 * 109.46928 * 240.00310 * 2 1 3 5 5 C 1.46891 * 111.00178 * 86.08622 * 4 2 1 6 6 C 1.53007 * 109.47084 * 206.54324 * 5 4 2 7 7 C 1.52998 * 109.47009 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47193 * 60.00150 * 7 6 5 9 9 C 1.50704 * 109.47015 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99868 * 120.00200 * 9 8 7 11 11 C 1.37876 * 119.99738 * 299.99850 * 9 8 7 12 12 N 1.31507 * 120.00505 * 0.02562 * 11 9 8 13 13 Si 1.86809 * 119.99606 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47107 * 59.99890 * 13 11 9 15 15 H 1.48496 * 109.46967 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46963 * 299.99973 * 13 11 9 17 17 C 1.52994 * 109.46946 * 299.99699 * 8 7 6 18 18 C 1.53003 * 109.47099 * 86.54486 * 5 4 2 19 19 C 1.50699 * 109.47410 * 120.00245 * 2 1 3 20 20 C 1.39872 * 126.03987 * 79.99156 * 19 2 1 21 21 N 1.30830 * 108.20555 * 180.02562 * 20 19 2 22 22 N 1.40089 * 108.20465 * 0.02562 * 21 20 19 23 23 C 1.46500 * 126.04218 * 179.97438 * 22 21 20 24 24 C 1.34951 * 107.92680 * 359.97438 * 22 21 20 25 25 H 1.08997 * 109.47509 * 184.27135 * 1 2 3 26 26 H 1.09009 * 109.46947 * 304.27407 * 1 2 3 27 27 H 1.09000 * 109.47176 * 64.26915 * 1 2 3 28 28 H 1.00897 * 110.99757 * 210.04827 * 4 2 1 29 29 H 1.08997 * 109.47581 * 326.54215 * 5 4 2 30 30 H 1.08996 * 109.47195 * 299.99964 * 6 5 4 31 31 H 1.09004 * 109.46837 * 60.00283 * 6 5 4 32 32 H 1.08998 * 109.47692 * 300.00368 * 7 6 5 33 33 H 1.09005 * 109.47321 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.46757 * 60.00101 * 8 7 6 35 35 H 0.96999 * 119.99991 * 179.97438 * 12 11 9 36 36 H 1.08997 * 109.47720 * 299.99812 * 17 8 7 37 37 H 1.09002 * 109.47159 * 179.97438 * 17 8 7 38 38 H 1.08992 * 109.46996 * 300.00107 * 18 5 4 39 39 H 1.08997 * 109.46757 * 60.00135 * 18 5 4 40 40 H 1.08001 * 125.89580 * 0.02562 * 20 19 2 41 41 H 1.08999 * 109.47003 * 90.01579 * 23 22 21 42 42 H 1.08993 * 109.47328 * 210.02316 * 23 22 21 43 43 H 1.09009 * 109.46728 * 330.01856 * 23 22 21 44 44 H 1.07994 * 126.13264 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.1068 0.2287 -2.3404 6 6 1.9621 -0.5591 -3.6441 7 6 2.0535 0.4003 -4.8324 8 6 3.4094 1.1089 -4.8126 9 6 3.4998 2.0534 -5.9835 10 1 3.6457 3.1102 -5.8148 11 6 3.3961 1.5684 -7.2700 12 7 3.2180 0.2817 -7.4753 13 14 3.5088 2.7391 -8.7214 14 1 4.8250 3.4264 -8.7019 15 1 3.3678 1.9742 -9.9863 16 1 2.4225 3.7474 -8.6295 17 6 3.5541 1.8966 -3.5090 18 6 3.4624 0.9378 -2.3209 19 6 2.0324 -0.7104 1.2304 20 6 2.1214 -2.0957 1.4021 21 7 2.6017 -2.3295 2.5964 22 7 2.8334 -1.0985 3.2236 23 6 3.3688 -0.9063 4.5737 24 6 2.4762 -0.1209 2.3647 25 1 -0.3634 -1.0248 0.0765 26 1 -0.3633 0.5788 0.8493 27 1 -0.3633 0.4462 -0.9258 28 1 2.9089 -1.1355 -1.0236 29 1 1.3090 0.9681 -2.2723 30 1 2.7599 -1.2985 -3.7123 31 1 0.9962 -1.0642 -3.6580 32 1 1.2560 1.1401 -4.7645 33 1 1.9500 -0.1608 -5.7612 34 1 4.2070 0.3691 -4.8807 35 1 3.1448 -0.0594 -8.3804 36 1 2.7566 2.6364 -3.4410 37 1 4.5203 2.4011 -3.4947 38 1 3.5656 1.4989 -1.3922 39 1 4.2603 0.1983 -2.3891 40 1 1.8419 -2.8432 0.6744 41 1 4.4561 -0.8440 4.5278 42 1 2.9694 0.0161 4.9950 43 1 3.0793 -1.7483 5.2026 44 1 2.5343 0.9415 2.5493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:47 Heat of formation + Delta-G solvation = 38.813866 kcal Electronic energy + Delta-G solvation = -21665.223494 eV Core-core repulsion = 18617.414093 eV Total energy + Delta-G solvation = -3047.809400 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.13605 -39.76336 -37.00972 -34.72159 -33.73060 -32.19763 -31.29815 -30.19080 -28.93403 -27.42660 -26.05831 -23.64628 -23.01386 -22.26801 -21.56545 -20.83825 -20.29680 -18.35827 -17.82881 -16.72570 -16.31407 -16.23290 -16.06262 -15.19452 -14.99027 -14.93040 -14.61558 -14.45878 -13.88651 -13.85308 -13.61604 -13.55207 -13.33849 -12.92471 -12.91245 -12.77400 -12.69284 -12.49435 -12.35186 -12.12935 -11.94588 -11.77991 -11.56264 -11.33951 -11.13089 -10.69556 -10.57063 -10.32046 -10.31413 -9.29255 -9.13213 -8.03587 -6.17923 0.98376 1.42426 1.43514 1.51131 1.74225 1.86578 2.45747 3.21670 3.30499 3.72555 3.99504 4.05931 4.16662 4.27670 4.39890 4.45532 4.46148 4.49752 4.62344 4.70597 4.71479 4.76864 4.87932 4.90822 4.92610 4.96345 5.02785 5.07352 5.17477 5.22456 5.27529 5.40960 5.44992 5.51246 5.54506 5.67404 5.73261 5.77131 6.09025 6.16036 6.23933 6.37976 6.46078 6.64029 6.78880 6.95494 7.49858 8.99822 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.041090 B = 0.003211 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.271201 B = 8718.536742 C = 8887.975535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.167 3.833 3 H 0.051 0.949 4 N -0.678 5.678 5 C 0.106 3.894 6 C -0.091 4.091 7 C -0.101 4.101 8 C 0.046 3.954 9 C -0.536 4.536 10 H 0.050 0.950 11 C 0.011 3.989 12 N -0.916 5.916 13 Si 0.950 3.050 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.271 1.271 17 C -0.097 4.097 18 C -0.131 4.131 19 C -0.251 4.251 20 C 0.058 3.942 21 N -0.338 5.338 22 N -0.381 5.381 23 C 0.094 3.906 24 C 0.065 3.935 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.340 0.660 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.026 0.974 33 H 0.055 0.945 34 H -0.011 1.011 35 H 0.259 0.741 36 H 0.049 0.951 37 H 0.041 0.959 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.185 0.815 41 H 0.082 0.918 42 H 0.115 0.885 43 H 0.088 0.912 44 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.654 0.168 23.092 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.057 3.943 3 H 0.069 0.931 4 N -0.308 5.308 5 C -0.004 4.004 6 C -0.129 4.129 7 C -0.139 4.139 8 C 0.028 3.972 9 C -0.574 4.574 10 H 0.068 0.932 11 C -0.187 4.187 12 N -0.556 5.556 13 Si 0.776 3.224 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.196 1.196 17 C -0.136 4.136 18 C -0.170 4.170 19 C -0.263 4.263 20 C -0.127 4.127 21 N -0.160 5.160 22 N -0.164 5.164 23 C -0.046 4.046 24 C -0.083 4.083 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.159 0.841 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.007 0.993 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.202 0.798 41 H 0.101 0.899 42 H 0.134 0.866 43 H 0.107 0.893 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.888 -1.090 23.814 24.013 hybrid contribution 0.758 1.404 -1.658 2.301 sum -2.129 0.314 22.157 22.261 Atomic orbital electron populations 1.21736 0.94111 1.01768 1.01031 1.19662 0.95157 0.94514 0.84967 0.93114 1.60695 1.34078 1.31754 1.04277 1.21390 0.95832 0.92939 0.90231 1.21399 1.00211 0.97462 0.93853 1.21399 0.97637 0.97360 0.97528 1.18612 0.93207 0.93551 0.91843 1.21628 1.49219 0.94281 0.92320 0.93194 1.25740 0.95040 0.96478 1.01461 1.70021 1.50593 1.13640 1.21336 0.85735 0.78750 0.79148 0.78757 1.19795 1.21050 1.19616 1.21419 0.99678 0.97604 0.94866 1.22119 0.98185 0.98752 0.97911 1.20192 1.14324 0.93452 0.98292 1.23893 0.97896 0.96804 0.94157 1.77308 1.23902 1.05070 1.09734 1.48802 1.49606 1.03342 1.14603 1.22168 1.00118 1.05062 0.77283 1.22793 0.98654 0.96639 0.90190 0.92940 0.91695 0.93393 0.84140 0.90960 0.94192 0.92676 0.95482 0.92626 0.99328 0.93177 0.93265 0.94061 0.91378 0.93209 0.79773 0.89909 0.86638 0.89293 0.77929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.41 71.98 0.68 -2.10 16 2 C 0.17 3.74 2.85 44.17 0.13 3.87 16 3 H 0.05 1.11 7.22 -2.39 -0.02 1.09 16 4 N -0.68 -18.14 5.87 -473.31 -2.78 -20.92 16 5 C 0.11 3.38 2.26 44.92 0.10 3.49 16 6 C -0.09 -3.55 5.53 30.60 0.17 -3.38 16 7 C -0.10 -4.83 4.98 30.59 0.15 -4.68 16 8 C 0.05 2.35 2.10 -11.54 -0.02 2.32 16 9 C -0.54 -30.13 8.56 25.60 0.22 -29.91 16 10 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 11 C 0.01 0.63 5.30 84.66 0.45 1.08 16 12 N -0.92 -54.09 11.32 21.45 0.24 -53.85 16 13 Si 0.95 44.30 29.54 68.60 2.03 46.32 16 14 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 C -0.10 -3.99 5.14 30.58 0.16 -3.83 16 18 C -0.13 -4.31 5.15 30.58 0.16 -4.15 16 19 C -0.25 -5.34 4.81 -20.14 -0.10 -5.43 16 20 C 0.06 1.38 11.44 85.24 0.98 2.35 16 21 N -0.34 -8.40 12.58 -57.03 -0.72 -9.12 16 22 N -0.38 -7.05 4.01 -369.57 -1.48 -8.54 16 23 C 0.09 0.85 11.47 127.77 1.47 2.32 16 24 C 0.06 1.11 11.40 83.54 0.95 2.06 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.05 1.12 7.49 -2.39 -0.02 1.11 16 28 H 0.34 9.15 7.83 -89.70 -0.70 8.45 16 29 H 0.07 2.32 7.18 -2.39 -0.02 2.31 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 3.07 6.07 -2.38 -0.01 3.05 16 34 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 1.90 7.56 -2.39 -0.02 1.88 16 39 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 40 H 0.19 4.15 8.06 -2.91 -0.02 4.12 16 41 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.20 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -66.60 348.24 3.03 -63.57 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.26 Total: 18.53 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 5.48 Total: -36.00 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -4.74 Total: -92.43 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -66.60 3.03 -63.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.383 kcal (2) G-P(sol) polarization free energy of solvation -66.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds