Wall clock time and date at job start Mon Mar 30 2020 02:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47106 * 2 1 4 4 N 1.46906 * 109.46880 * 119.99740 * 2 1 3 5 5 C 1.46899 * 110.99742 * 273.76845 * 4 2 1 6 6 C 1.52993 * 109.47246 * 274.78575 * 5 4 2 7 7 C 1.52997 * 109.47572 * 300.00043 * 6 5 4 8 8 C 1.53000 * 109.47191 * 300.00439 * 7 6 5 9 9 C 1.50703 * 109.46811 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00227 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99338 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99710 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00628 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46831 * 89.99742 * 13 11 9 15 15 H 1.48495 * 109.47461 * 210.00283 * 13 11 9 16 16 H 1.48500 * 109.46842 * 330.00268 * 13 11 9 17 17 C 1.52993 * 109.47221 * 59.99346 * 8 7 6 18 18 C 1.52997 * 109.47572 * 300.00421 * 17 8 7 19 19 C 1.50697 * 109.47208 * 239.99703 * 2 1 3 20 20 C 1.39875 * 126.04161 * 279.69079 * 19 2 1 21 21 N 1.30831 * 108.20258 * 179.81876 * 20 19 2 22 22 N 1.40082 * 108.20528 * 0.43855 * 21 20 19 23 23 C 1.46511 * 126.03594 * 179.73902 * 22 21 20 24 24 C 1.34947 * 107.92806 * 359.72205 * 22 21 20 25 25 H 1.09002 * 109.46825 * 65.19571 * 1 2 3 26 26 H 1.09001 * 109.46821 * 185.19167 * 1 2 3 27 27 H 1.09002 * 109.47261 * 305.19304 * 1 2 3 28 28 H 1.00899 * 110.99607 * 149.81912 * 4 2 1 29 29 H 1.09005 * 109.46943 * 34.79218 * 5 4 2 30 30 H 1.09004 * 109.46920 * 180.02562 * 6 5 4 31 31 H 1.09007 * 109.47274 * 60.00592 * 6 5 4 32 32 H 1.09004 * 109.46996 * 60.00048 * 7 6 5 33 33 H 1.09002 * 109.47502 * 180.02562 * 7 6 5 34 34 H 1.08994 * 109.46816 * 299.99665 * 8 7 6 35 35 H 0.97004 * 120.00501 * 180.02562 * 12 11 9 36 36 H 1.09007 * 109.47274 * 179.97438 * 17 8 7 37 37 H 1.09004 * 109.46920 * 60.00419 * 17 8 7 38 38 H 1.09005 * 109.46556 * 299.99647 * 18 17 8 39 39 H 1.09002 * 109.47055 * 180.02562 * 18 17 8 40 40 H 1.08004 * 125.89423 * 0.02562 * 20 19 2 41 41 H 1.08995 * 109.47025 * 269.97817 * 23 22 21 42 42 H 1.09002 * 109.46812 * 29.98042 * 23 22 21 43 43 H 1.08999 * 109.46672 * 149.97987 * 23 22 21 44 44 H 1.07998 * 126.12799 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.1101 0.2296 2.3395 6 6 3.4537 0.9602 2.2992 7 6 4.5915 -0.0596 2.3767 8 6 4.4798 -0.8501 3.6819 9 6 5.6003 -1.8551 3.7578 10 1 6.3197 -1.9235 2.9553 11 6 5.7068 -2.6872 4.8520 12 7 6.6848 -3.5639 4.9186 13 14 4.4628 -2.5686 6.2405 14 1 3.3264 -3.4843 5.9665 15 1 5.1110 -2.9529 7.5200 16 1 3.9622 -1.1739 6.3386 17 6 3.1363 -1.5808 3.7223 18 6 1.9985 -0.5609 3.6448 19 6 2.0324 -0.7105 -1.2304 20 6 2.1272 -2.0957 -1.3998 21 7 2.6023 -2.3295 -2.5962 22 7 2.8346 -1.0985 -3.2231 23 6 3.3709 -0.9064 -4.5729 24 6 2.4769 -0.1209 -2.3644 25 1 -0.3633 0.4311 -0.9329 26 1 -0.3633 -1.0235 0.0930 27 1 -0.3634 0.5923 0.8398 28 1 2.9079 -1.1373 1.0229 29 1 1.2994 0.9562 2.2844 30 1 3.5209 1.6441 3.1454 31 1 3.5332 1.5234 1.3693 32 1 4.5244 -0.7438 1.5307 33 1 5.5487 0.4610 2.3483 34 1 4.5469 -0.1660 4.5277 35 1 6.7597 -4.1497 5.6882 36 1 3.0569 -2.1444 4.6520 37 1 3.0692 -2.2650 2.8763 38 1 2.0656 0.1232 4.4908 39 1 1.0413 -1.0816 3.6740 40 1 1.8522 -2.8431 -0.6703 41 1 4.4581 -0.8444 -4.5265 42 1 3.0814 -1.7481 -5.2021 43 1 2.9719 0.0163 -4.9943 44 1 2.5347 0.9415 -2.5492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330092.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:50 Heat of formation + Delta-G solvation = 69.505698 kcal Electronic energy + Delta-G solvation = -22357.723332 eV Core-core repulsion = 19311.244830 eV Total energy + Delta-G solvation = -3046.478503 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.22205 -38.79807 -35.49600 -33.19051 -32.43317 -30.77740 -30.05947 -29.28578 -27.87906 -26.62599 -24.41841 -22.62820 -21.83382 -21.14348 -20.39356 -19.81985 -18.06828 -17.09192 -16.56369 -15.66589 -15.50393 -14.84046 -14.63159 -14.33523 -14.01449 -13.37555 -13.30763 -13.09368 -13.00695 -12.77200 -12.60744 -12.57395 -12.12937 -11.91149 -11.66107 -11.58772 -11.38829 -11.15163 -10.70241 -10.48532 -10.44778 -10.36373 -9.90403 -9.77682 -9.43306 -9.39444 -8.94154 -8.72841 -8.43405 -8.37326 -7.96801 -5.98553 -3.96788 1.87689 2.50376 2.86158 3.35907 3.45019 3.47892 4.35418 4.49947 4.56942 4.79231 4.95361 5.03973 5.19377 5.30681 5.32913 5.36114 5.38273 5.46890 5.57075 5.65774 5.77244 5.81589 5.98239 6.03418 6.07886 6.15526 6.24594 6.27837 6.38092 6.43999 6.48654 6.60449 6.69130 6.71224 6.84374 6.95983 7.06059 7.15497 7.37119 7.51042 7.69444 7.74197 7.86210 7.89082 8.61986 9.05757 9.65038 11.14988 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020851 B = 0.004882 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.533156 B = 5733.897342 C = 6384.236713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.162 3.838 3 H 0.044 0.956 4 N -0.677 5.677 5 C 0.095 3.905 6 C -0.150 4.150 7 C -0.097 4.097 8 C 0.014 3.986 9 C -0.511 4.511 10 H 0.070 0.930 11 C 0.068 3.932 12 N -0.905 5.905 13 Si 0.890 3.110 14 H -0.279 1.279 15 H -0.301 1.301 16 H -0.266 1.266 17 C -0.116 4.116 18 C -0.108 4.108 19 C -0.234 4.234 20 C 0.071 3.929 21 N -0.301 5.301 22 N -0.381 5.381 23 C 0.104 3.896 24 C 0.054 3.946 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.353 0.647 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.023 0.977 35 H 0.262 0.738 36 H 0.041 0.959 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.187 0.813 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.698 10.015 -14.784 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.051 3.949 3 H 0.062 0.938 4 N -0.311 5.311 5 C -0.015 4.015 6 C -0.189 4.189 7 C -0.135 4.135 8 C -0.004 4.004 9 C -0.549 4.549 10 H 0.088 0.912 11 C -0.133 4.133 12 N -0.544 5.544 13 Si 0.721 3.279 14 H -0.206 1.206 15 H -0.229 1.229 16 H -0.191 1.191 17 C -0.154 4.154 18 C -0.146 4.146 19 C -0.246 4.246 20 C -0.115 4.115 21 N -0.122 5.122 22 N -0.163 5.163 23 C -0.038 4.038 24 C -0.093 4.093 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.176 0.824 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.204 0.796 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.812 8.757 -15.523 21.381 hybrid contribution 0.064 1.113 1.103 1.568 sum -11.749 9.870 -14.420 21.057 Atomic orbital electron populations 1.21770 0.94601 1.02338 1.00197 1.19677 0.94816 0.94431 0.85985 0.93822 1.60788 1.35719 1.31077 1.03558 1.21485 0.95548 0.92966 0.91464 1.22244 0.97134 0.98962 1.00532 1.21408 0.96045 0.96477 0.99545 1.19142 0.93097 0.94889 0.93305 1.21089 1.10752 1.17173 1.05850 0.91173 1.25024 0.95320 0.94925 0.98011 1.69913 1.31895 1.22128 1.30452 0.86805 0.81055 0.78927 0.81141 1.20591 1.22935 1.19112 1.21894 0.95122 0.97618 1.00739 1.21578 0.99410 0.98475 0.95185 1.20178 1.12969 0.93778 0.97652 1.23831 0.97463 0.96193 0.94034 1.77395 1.22518 1.03057 1.09207 1.48438 1.50360 1.04079 1.13456 1.21799 0.99468 1.03313 0.79205 1.22243 1.00672 0.95203 0.91168 0.93359 0.91941 0.93026 0.82399 0.91650 0.92099 0.93548 0.93024 0.92987 0.95911 0.92844 0.94050 0.91621 0.92903 0.92570 0.79621 0.90847 0.89464 0.89787 0.81358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 9.37 37.16 0.35 -1.11 16 2 C 0.16 2.00 2.85 -68.86 -0.20 1.81 16 3 H 0.04 0.53 7.12 -51.93 -0.37 0.16 16 4 N -0.68 -9.95 5.37 -100.96 -0.54 -10.49 16 5 C 0.10 1.44 2.66 -67.72 -0.18 1.26 16 6 C -0.15 -2.37 5.50 -26.74 -0.15 -2.52 16 7 C -0.10 -1.90 4.89 -26.73 -0.13 -2.03 16 8 C 0.01 0.34 1.69 -91.77 -0.16 0.18 16 9 C -0.51 -14.46 9.14 -34.44 -0.31 -14.77 16 10 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 11 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 12 N -0.91 -28.25 13.96 55.43 0.77 -27.47 16 13 Si 0.89 22.52 24.38 -169.99 -4.14 18.37 16 14 H -0.28 -6.91 6.87 56.52 0.39 -6.52 16 15 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 16 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 17 C -0.12 -2.49 4.45 -26.74 -0.12 -2.61 16 18 C -0.11 -1.89 5.64 -26.73 -0.15 -2.04 16 19 C -0.23 -2.98 4.81 -105.05 -0.51 -3.49 16 20 C 0.07 1.01 11.43 -17.37 -0.20 0.81 16 21 N -0.30 -4.44 12.58 30.63 0.39 -4.06 16 22 N -0.38 -4.50 4.01 -68.16 -0.27 -4.77 16 23 C 0.10 0.75 11.47 59.85 0.69 1.43 16 24 C 0.05 0.60 11.40 -17.22 -0.20 0.40 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.56 7.59 -51.93 -0.39 0.16 16 28 H 0.35 5.86 4.94 -39.29 -0.19 5.67 16 29 H 0.07 0.89 7.25 -51.93 -0.38 0.51 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.66 7.46 -51.93 -0.39 0.27 16 32 H 0.05 1.03 6.26 -51.93 -0.32 0.70 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.04 0.96 3.27 -51.93 -0.17 0.79 16 37 H 0.07 1.43 7.22 -51.93 -0.37 1.05 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.19 2.51 8.06 -52.48 -0.42 2.09 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -32.44 335.54 -7.32 -39.76 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.22 Total: 4.39 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -1.36 Total: -20.79 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.34 Total: -46.79 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.14 Total: 18.37 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.44 -7.32 -39.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330092.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.261 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds