Wall clock time and date at job start Mon Mar 30 2020 02:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47106 * 2 1 4 4 N 1.46906 * 109.46880 * 119.99740 * 2 1 3 5 5 C 1.46899 * 110.99742 * 273.76845 * 4 2 1 6 6 C 1.52993 * 109.47246 * 274.78575 * 5 4 2 7 7 C 1.52997 * 109.47572 * 300.00043 * 6 5 4 8 8 C 1.53000 * 109.47191 * 300.00439 * 7 6 5 9 9 C 1.50703 * 109.46811 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00227 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99338 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99710 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00628 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46831 * 89.99742 * 13 11 9 15 15 H 1.48495 * 109.47461 * 210.00283 * 13 11 9 16 16 H 1.48500 * 109.46842 * 330.00268 * 13 11 9 17 17 C 1.52993 * 109.47221 * 59.99346 * 8 7 6 18 18 C 1.52997 * 109.47572 * 300.00421 * 17 8 7 19 19 C 1.50697 * 109.47208 * 239.99703 * 2 1 3 20 20 C 1.39875 * 126.04161 * 279.69079 * 19 2 1 21 21 N 1.30831 * 108.20258 * 179.81876 * 20 19 2 22 22 N 1.40082 * 108.20528 * 0.43855 * 21 20 19 23 23 C 1.46511 * 126.03594 * 179.73902 * 22 21 20 24 24 C 1.34947 * 107.92806 * 359.72205 * 22 21 20 25 25 H 1.09002 * 109.46825 * 65.19571 * 1 2 3 26 26 H 1.09001 * 109.46821 * 185.19167 * 1 2 3 27 27 H 1.09002 * 109.47261 * 305.19304 * 1 2 3 28 28 H 1.00899 * 110.99607 * 149.81912 * 4 2 1 29 29 H 1.09005 * 109.46943 * 34.79218 * 5 4 2 30 30 H 1.09004 * 109.46920 * 180.02562 * 6 5 4 31 31 H 1.09007 * 109.47274 * 60.00592 * 6 5 4 32 32 H 1.09004 * 109.46996 * 60.00048 * 7 6 5 33 33 H 1.09002 * 109.47502 * 180.02562 * 7 6 5 34 34 H 1.08994 * 109.46816 * 299.99665 * 8 7 6 35 35 H 0.97004 * 120.00501 * 180.02562 * 12 11 9 36 36 H 1.09007 * 109.47274 * 179.97438 * 17 8 7 37 37 H 1.09004 * 109.46920 * 60.00419 * 17 8 7 38 38 H 1.09005 * 109.46556 * 299.99647 * 18 17 8 39 39 H 1.09002 * 109.47055 * 180.02562 * 18 17 8 40 40 H 1.08004 * 125.89423 * 0.02562 * 20 19 2 41 41 H 1.08995 * 109.47025 * 269.97817 * 23 22 21 42 42 H 1.09002 * 109.46812 * 29.98042 * 23 22 21 43 43 H 1.08999 * 109.46672 * 149.97987 * 23 22 21 44 44 H 1.07998 * 126.12799 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.1101 0.2296 2.3395 6 6 3.4537 0.9602 2.2992 7 6 4.5915 -0.0596 2.3767 8 6 4.4798 -0.8501 3.6819 9 6 5.6003 -1.8551 3.7578 10 1 6.3197 -1.9235 2.9553 11 6 5.7068 -2.6872 4.8520 12 7 6.6848 -3.5639 4.9186 13 14 4.4628 -2.5686 6.2405 14 1 3.3264 -3.4843 5.9665 15 1 5.1110 -2.9529 7.5200 16 1 3.9622 -1.1739 6.3386 17 6 3.1363 -1.5808 3.7223 18 6 1.9985 -0.5609 3.6448 19 6 2.0324 -0.7105 -1.2304 20 6 2.1272 -2.0957 -1.3998 21 7 2.6023 -2.3295 -2.5962 22 7 2.8346 -1.0985 -3.2231 23 6 3.3709 -0.9064 -4.5729 24 6 2.4769 -0.1209 -2.3644 25 1 -0.3633 0.4311 -0.9329 26 1 -0.3633 -1.0235 0.0930 27 1 -0.3634 0.5923 0.8398 28 1 2.9079 -1.1373 1.0229 29 1 1.2994 0.9562 2.2844 30 1 3.5209 1.6441 3.1454 31 1 3.5332 1.5234 1.3693 32 1 4.5244 -0.7438 1.5307 33 1 5.5487 0.4610 2.3483 34 1 4.5469 -0.1660 4.5277 35 1 6.7597 -4.1497 5.6882 36 1 3.0569 -2.1444 4.6520 37 1 3.0692 -2.2650 2.8763 38 1 2.0656 0.1232 4.4908 39 1 1.0413 -1.0816 3.6740 40 1 1.8522 -2.8431 -0.6703 41 1 4.4581 -0.8444 -4.5265 42 1 3.0814 -1.7481 -5.2021 43 1 2.9719 0.0163 -4.9943 44 1 2.5347 0.9415 -2.5492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330092.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:50 Heat of formation + Delta-G solvation = 47.858310 kcal Electronic energy + Delta-G solvation = -22358.662034 eV Core-core repulsion = 19311.244830 eV Total energy + Delta-G solvation = -3047.417204 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.13707 -40.16238 -36.75985 -34.72234 -33.73913 -32.27751 -31.54917 -30.34537 -29.03264 -27.43482 -26.28198 -23.75727 -23.19431 -22.32114 -21.81364 -20.77627 -19.46140 -18.74477 -18.03090 -17.04127 -16.35774 -16.28657 -15.85474 -15.34446 -15.16165 -14.92240 -14.74057 -14.71647 -14.26057 -13.81310 -13.61324 -13.48192 -13.38666 -13.25994 -13.09946 -12.86292 -12.63886 -12.34126 -12.13301 -12.01518 -11.98032 -11.81334 -11.57673 -11.33813 -11.13763 -10.84487 -10.52517 -10.49316 -10.32268 -9.27750 -9.08459 -8.27072 -6.29579 0.99403 1.33534 1.36868 1.48522 1.75320 1.87629 2.35606 3.09575 3.38458 3.73273 4.04170 4.04791 4.08582 4.16516 4.31838 4.42986 4.44896 4.49993 4.57952 4.65542 4.69797 4.72924 4.79148 4.81137 4.86682 4.91503 4.92882 4.98216 5.11119 5.15056 5.22887 5.30443 5.34509 5.44965 5.51094 5.57715 5.67519 5.73328 5.76060 5.91750 6.19151 6.36249 6.46544 6.63301 6.78523 6.79608 7.36073 8.90309 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020851 B = 0.004882 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.533156 B = 5733.897342 C = 6384.236713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.166 3.834 3 H 0.058 0.942 4 N -0.685 5.685 5 C 0.100 3.900 6 C -0.139 4.139 7 C -0.092 4.092 8 C 0.015 3.985 9 C -0.516 4.516 10 H 0.025 0.975 11 C 0.008 3.992 12 N -0.956 5.956 13 Si 0.955 3.045 14 H -0.270 1.270 15 H -0.304 1.304 16 H -0.243 1.243 17 C -0.112 4.112 18 C -0.104 4.104 19 C -0.251 4.251 20 C 0.053 3.947 21 N -0.342 5.342 22 N -0.382 5.382 23 C 0.094 3.906 24 C 0.064 3.936 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.339 0.661 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.039 0.961 34 H 0.019 0.981 35 H 0.263 0.737 36 H 0.024 0.976 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.177 0.823 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.211 13.055 -15.402 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.056 3.944 3 H 0.076 0.924 4 N -0.318 5.318 5 C -0.009 4.009 6 C -0.178 4.178 7 C -0.130 4.130 8 C -0.004 4.004 9 C -0.554 4.554 10 H 0.044 0.956 11 C -0.188 4.188 12 N -0.597 5.597 13 Si 0.783 3.217 14 H -0.197 1.197 15 H -0.232 1.232 16 H -0.167 1.167 17 C -0.150 4.150 18 C -0.142 4.142 19 C -0.263 4.263 20 C -0.133 4.133 21 N -0.165 5.165 22 N -0.164 5.164 23 C -0.046 4.046 24 C -0.084 4.084 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.160 0.840 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.194 0.806 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.138 0.862 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -14.346 11.814 -16.169 24.633 hybrid contribution 0.968 0.144 1.139 1.502 sum -13.378 11.958 -15.030 23.406 Atomic orbital electron populations 1.21718 0.93611 1.01683 1.01271 1.19729 0.95400 0.94588 0.84695 0.92380 1.60783 1.34806 1.31546 1.04679 1.21479 0.95989 0.93026 0.90452 1.22165 0.95578 0.97869 1.02187 1.21287 0.97551 0.96967 0.97146 1.19104 0.92260 0.93899 0.95117 1.21487 1.11396 1.18192 1.04319 0.95631 1.25920 0.97356 0.94561 1.00990 1.70075 1.34357 1.23662 1.31626 0.85741 0.78506 0.80240 0.77247 1.19666 1.23181 1.16685 1.21742 0.95675 0.98286 0.99251 1.21558 0.97844 0.97729 0.97062 1.20309 1.14161 0.93068 0.98731 1.23853 0.98131 0.97222 0.94054 1.77307 1.23962 1.05318 1.09893 1.48810 1.49564 1.03337 1.14702 1.22168 0.99985 1.05145 0.77326 1.22839 0.98634 0.96685 0.90198 0.91978 0.93440 0.92232 0.83989 0.88533 0.91260 0.91126 0.93984 0.94206 0.96254 0.92811 0.95788 0.92883 0.91947 0.91309 0.80582 0.90245 0.89403 0.86216 0.77462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 9.37 71.98 0.67 -1.71 16 2 C 0.17 3.61 2.85 44.17 0.13 3.74 16 3 H 0.06 1.12 7.12 -2.39 -0.02 1.10 16 4 N -0.68 -18.68 5.37 -473.32 -2.54 -21.22 16 5 C 0.10 2.66 2.66 44.91 0.12 2.78 16 6 C -0.14 -3.94 5.50 30.59 0.17 -3.77 16 7 C -0.09 -3.54 4.89 30.59 0.15 -3.39 16 8 C 0.01 0.69 1.69 -11.54 -0.02 0.67 16 9 C -0.52 -30.32 9.14 25.60 0.23 -30.08 16 10 H 0.03 1.67 7.99 -2.91 -0.02 1.65 16 11 C 0.01 0.46 5.45 84.65 0.46 0.93 16 12 N -0.96 -62.10 13.96 21.45 0.30 -61.80 16 13 Si 0.96 46.92 24.38 68.60 1.67 48.59 16 14 H -0.27 -12.81 6.87 99.48 0.68 -12.12 16 15 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 16 H -0.24 -10.93 6.53 99.48 0.65 -10.28 16 17 C -0.11 -4.68 4.45 30.59 0.14 -4.55 16 18 C -0.10 -3.29 5.64 30.59 0.17 -3.11 16 19 C -0.25 -5.96 4.81 -20.14 -0.10 -6.05 16 20 C 0.05 1.51 11.43 85.24 0.97 2.49 16 21 N -0.34 -10.18 12.58 -57.02 -0.72 -10.90 16 22 N -0.38 -8.37 4.01 -369.55 -1.48 -9.85 16 23 C 0.09 1.14 11.47 127.77 1.47 2.60 16 24 C 0.06 1.24 11.40 83.54 0.95 2.19 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.04 7.59 -2.39 -0.02 1.02 16 28 H 0.34 11.04 4.94 -89.69 -0.44 10.60 16 29 H 0.10 2.07 7.25 -2.38 -0.02 2.06 16 30 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.07 1.70 7.46 -2.38 -0.02 1.68 16 32 H 0.04 1.69 6.26 -2.38 -0.01 1.68 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 35 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 36 H 0.02 1.08 3.27 -2.38 -0.01 1.07 16 37 H 0.05 2.32 7.22 -2.38 -0.02 2.30 16 38 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.18 5.09 8.06 -2.91 -0.02 5.06 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.21 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -73.89 335.54 3.20 -70.69 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.45 Total: 21.76 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 5.52 Total: -37.27 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -4.44 Total: -103.77 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.67 Total: 48.59 kcal Total: -73.89 3.20 -70.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330092.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.549 kcal (2) G-P(sol) polarization free energy of solvation -73.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds