Wall clock time and date at job start Mon Mar 30 2020 02:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99601 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99458 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99799 * 3 2 1 7 7 C 1.37876 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99844 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47127 * 299.99539 * 11 10 9 13 13 N 1.46899 * 109.47254 * 300.00134 * 12 11 10 14 14 C 1.46897 * 111.00355 * 204.99848 * 13 12 11 15 15 H 1.09006 * 110.41605 * 327.50559 * 14 13 12 16 16 C 1.54857 * 110.47001 * 90.13633 * 14 13 12 17 17 C 1.54862 * 102.74011 * 156.80288 * 16 14 13 18 18 C 1.54195 * 104.28337 * 321.90606 * 17 16 14 19 19 H 1.08998 * 111.91760 * 261.69516 * 18 17 16 20 20 C 1.54204 * 108.90788 * 138.10293 * 18 17 16 21 21 C 1.54860 * 104.27896 * 221.88504 * 20 18 17 22 22 C 1.54853 * 102.74157 * 38.10437 * 21 20 18 23 23 C 1.54196 * 110.47531 * 205.00176 * 14 13 12 24 24 H 1.08996 * 111.37862 * 339.95774 * 23 14 13 25 25 C 1.53002 * 109.46817 * 60.00361 * 12 11 10 26 26 C 1.52996 * 109.46972 * 299.99733 * 25 12 11 27 27 H 0.96991 * 119.99882 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 29 29 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 30 30 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 31 31 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 32 32 H 1.09001 * 109.46998 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.47153 * 180.02562 * 12 11 10 34 34 H 1.00898 * 111.00393 * 328.95803 * 13 12 11 35 35 H 1.08996 * 110.76382 * 275.12506 * 16 14 13 36 36 H 1.09002 * 110.75315 * 38.49760 * 16 14 13 37 37 H 1.08994 * 110.47371 * 203.19879 * 17 16 14 38 38 H 1.09007 * 110.57628 * 80.65567 * 17 16 14 39 39 H 1.08997 * 110.46524 * 103.19146 * 20 18 17 40 40 H 1.08997 * 110.58034 * 340.64592 * 20 18 17 41 41 H 1.08998 * 110.75993 * 279.78622 * 21 20 18 42 42 H 1.09002 * 110.90939 * 156.48696 * 21 20 18 43 43 H 1.09000 * 110.47277 * 203.19347 * 22 21 20 44 44 H 1.09005 * 110.47036 * 80.60042 * 22 21 20 45 45 H 1.08996 * 109.47407 * 60.00219 * 25 12 11 46 46 H 1.09000 * 109.46986 * 179.97438 * 25 12 11 47 47 H 1.09001 * 109.46993 * 180.02562 * 26 25 12 48 48 H 1.09000 * 109.47380 * 299.99696 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 6 6.0626 -1.9148 -1.2464 13 7 5.5740 -2.6069 -2.4464 14 6 6.4585 -2.3607 -3.5931 15 1 6.8970 -1.3648 -3.5282 16 6 7.5669 -3.4398 -3.6636 17 6 7.9824 -3.4057 -5.1550 18 6 6.6575 -3.1913 -5.9142 19 1 6.2532 -4.1273 -6.2995 20 6 6.8901 -2.1709 -7.0468 21 6 5.6384 -1.2601 -7.0033 22 6 5.3661 -1.1260 -5.4848 23 6 5.6840 -2.5238 -4.9165 24 1 4.7769 -3.1115 -4.7761 25 6 5.5526 -0.4723 -1.2462 26 6 4.0226 -0.4724 -1.2475 27 1 -0.4849 0.8400 -0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.6587 -3.1502 -0.8892 30 1 3.6580 -3.1505 0.8907 31 1 5.9142 -2.1228 0.8927 32 1 5.9150 -3.6641 0.0026 33 1 7.1526 -1.9151 -1.2457 34 1 5.4695 -3.5959 -2.2761 35 1 8.4069 -3.1734 -3.0223 36 1 7.1702 -4.4191 -3.3955 37 1 8.4393 -4.3518 -5.4453 38 1 8.6676 -2.5790 -5.3430 39 1 6.9589 -2.6785 -8.0089 40 1 7.7921 -1.5885 -6.8586 41 1 4.7966 -1.7361 -7.5062 42 1 5.8501 -0.2865 -7.4453 43 1 4.3218 -0.8702 -5.3059 44 1 6.0238 -0.3767 -5.0443 45 1 5.9152 0.0413 -0.3559 46 1 5.9170 0.0420 -2.1355 47 1 3.6592 0.5553 -1.2478 48 1 3.6600 -0.9858 -2.1380 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330176.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:12 Heat of formation + Delta-G solvation = -32.691800 kcal Electronic energy + Delta-G solvation = -23185.321043 eV Core-core repulsion = 20237.951268 eV Total energy + Delta-G solvation = -2947.369775 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.97361 -38.14988 -34.80603 -33.00896 -31.82331 -30.17496 -29.87465 -28.10848 -27.00545 -24.60684 -23.85344 -22.05136 -21.01032 -20.56286 -20.16358 -18.77993 -18.33991 -16.51266 -16.35226 -15.62378 -15.22001 -14.62086 -14.48445 -13.88436 -13.73238 -13.52988 -13.08166 -12.99216 -12.58504 -12.55205 -12.24748 -11.96340 -11.62389 -11.46332 -11.32708 -11.16026 -11.00225 -10.87067 -10.79844 -10.66924 -10.60067 -10.48791 -10.36864 -10.27865 -10.19503 -9.83510 -9.68220 -9.36419 -8.82744 -8.72470 -8.37399 -7.90819 -5.94352 -3.91116 3.37624 3.46544 3.49988 4.24874 4.46269 4.49102 4.53506 4.68984 5.04040 5.15454 5.18130 5.23577 5.36672 5.38676 5.42052 5.47859 5.55475 5.57401 5.62364 5.66865 5.75188 5.77456 5.85786 5.88376 5.93885 5.98096 6.03947 6.14187 6.16328 6.21151 6.28284 6.30769 6.35465 6.36347 6.40213 6.49923 6.57228 6.69029 6.70585 6.98398 7.21938 7.28855 7.45050 7.49206 7.75925 7.84087 7.95532 8.68392 9.11035 9.70035 11.19469 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.005215 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.797358 B = 5367.555524 C = 6057.946942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.302 1.302 6 H -0.267 1.267 7 C -0.504 4.504 8 H 0.070 0.930 9 C 0.017 3.983 10 C -0.091 4.091 11 C -0.122 4.122 12 C 0.097 3.903 13 N -0.666 5.666 14 C 0.091 3.909 15 H 0.080 0.920 16 C -0.155 4.155 17 C -0.114 4.114 18 C -0.095 4.095 19 H 0.075 0.925 20 C -0.119 4.119 21 C -0.127 4.127 22 C -0.114 4.114 23 C -0.080 4.080 24 H 0.086 0.914 25 C -0.109 4.109 26 C -0.106 4.106 27 H 0.261 0.739 28 H 0.017 0.983 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.029 0.971 34 H 0.338 0.662 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.044 0.956 47 H 0.034 0.966 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.260 -5.562 -11.192 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.230 1.230 6 H -0.192 1.192 7 C -0.542 4.542 8 H 0.089 0.911 9 C -0.002 4.002 10 C -0.129 4.129 11 C -0.160 4.160 12 C -0.012 4.012 13 N -0.296 5.296 14 C -0.019 4.019 15 H 0.098 0.902 16 C -0.195 4.195 17 C -0.152 4.152 18 C -0.114 4.114 19 H 0.093 0.907 20 C -0.156 4.156 21 C -0.165 4.165 22 C -0.152 4.152 23 C -0.099 4.099 24 H 0.104 0.896 25 C -0.147 4.147 26 C -0.143 4.143 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.158 0.842 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.648 -4.946 -11.327 20.734 hybrid contribution 1.185 0.463 0.190 1.286 sum 17.833 -4.483 -11.137 21.497 Atomic orbital electron populations 1.69912 1.06298 1.26634 1.51830 1.25014 0.94620 0.98968 0.94764 0.86807 0.79733 0.83646 0.77681 1.20815 1.23042 1.19244 1.21109 0.89217 0.94176 1.49743 0.91143 1.19098 0.96122 0.91950 0.93035 1.21337 0.91439 0.99288 1.00821 1.21793 0.99124 0.98349 0.96700 1.21421 0.94990 0.95258 0.89575 1.60483 1.49563 1.15433 1.04126 1.22643 0.90488 0.97845 0.90966 0.90192 1.23259 0.99612 0.99963 0.96639 1.22389 0.96751 1.01180 0.94901 1.22360 0.95310 0.98361 0.95321 0.90674 1.22495 0.98194 0.96959 0.97958 1.22531 0.97656 0.99181 0.97097 1.22416 1.01974 0.96515 0.94295 1.22319 0.98095 0.96338 0.93130 0.89565 1.21601 0.99090 0.94415 0.99582 1.21778 0.91651 0.99068 1.01836 0.92953 0.96464 0.91870 0.93553 0.92175 0.93481 0.95319 0.84237 0.92163 0.91467 0.92275 0.91677 0.92316 0.91758 0.91704 0.92048 0.91292 0.91921 0.93141 0.93733 0.94785 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 2 C 0.07 1.97 5.45 -17.82 -0.10 1.88 16 3 Si 0.89 22.90 24.37 -169.99 -4.14 18.75 16 4 H -0.28 -7.09 6.87 56.52 0.39 -6.70 16 5 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 6 H -0.27 -6.60 6.53 56.52 0.37 -6.23 16 7 C -0.50 -14.46 9.14 -34.44 -0.31 -14.77 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.02 0.40 1.69 -91.77 -0.16 0.24 16 10 C -0.09 -1.81 4.98 -26.73 -0.13 -1.94 16 11 C -0.12 -1.93 5.30 -26.73 -0.14 -2.08 16 12 C 0.10 1.47 2.69 -67.71 -0.18 1.29 16 13 N -0.67 -9.47 4.63 -98.06 -0.45 -9.92 16 14 C 0.09 1.11 2.47 -66.11 -0.16 0.95 16 15 H 0.08 1.06 6.27 -51.93 -0.33 0.73 16 16 C -0.16 -1.60 6.45 -24.77 -0.16 -1.76 16 17 C -0.11 -1.06 6.36 -25.12 -0.16 -1.22 16 18 C -0.09 -0.94 3.74 -88.55 -0.33 -1.27 16 19 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 20 C -0.12 -1.10 6.35 -25.12 -0.16 -1.26 16 21 C -0.13 -1.30 6.90 -24.77 -0.17 -1.47 16 22 C -0.11 -1.40 6.36 -25.13 -0.16 -1.56 16 23 C -0.08 -0.95 3.45 -88.55 -0.31 -1.25 16 24 H 0.09 1.15 8.06 -51.93 -0.42 0.73 16 25 C -0.11 -1.94 5.52 -26.73 -0.15 -2.09 16 26 C -0.11 -2.33 4.52 -26.73 -0.12 -2.45 16 27 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 28 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 29 H 0.06 1.27 7.48 -51.93 -0.39 0.88 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.65 8.12 -51.93 -0.42 0.22 16 33 H 0.03 0.40 7.86 -51.93 -0.41 0.00 16 34 H 0.34 4.54 7.69 -39.29 -0.30 4.24 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.68 7.80 -51.93 -0.40 0.28 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.59 7.21 -51.93 -0.37 0.22 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.58 7.22 -51.93 -0.37 0.21 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.79 7.21 -51.93 -0.37 0.41 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.04 0.75 7.50 -51.93 -0.39 0.36 16 47 H 0.03 0.81 3.27 -51.93 -0.17 0.64 16 48 H 0.07 1.69 7.60 -51.93 -0.39 1.30 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -29.87 343.04 -10.50 -40.37 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -8.95 Total: 2.15 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: -2.90 Total: -28.76 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.32 Total: -37.68 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.14 Total: 18.75 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.87 -10.50 -40.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330176.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.679 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds