Wall clock time and date at job start Mon Mar 30 2020 02:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99724 * 2 1 4 4 H 1.48505 * 109.46927 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47383 * 300.00209 * 3 2 1 6 6 H 1.48500 * 109.46957 * 60.00834 * 3 2 1 7 7 C 1.37874 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00465 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99712 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46927 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47073 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46631 * 300.00137 * 11 10 9 13 13 N 1.46907 * 109.46703 * 180.02562 * 12 11 10 14 14 C 1.48819 * 111.00021 * 175.00028 * 13 12 11 15 15 C 1.52552 * 105.66184 * 241.16016 * 14 13 12 16 16 H 1.09007 * 110.01291 * 86.81809 * 15 14 13 17 17 C 1.51521 * 116.99727 * 214.26372 * 15 14 13 18 18 C 1.53808 * 107.11180 * 178.22645 * 17 15 14 19 19 C 1.52536 * 111.59900 * 302.67874 * 18 17 15 20 20 C 1.53778 * 111.64631 * 54.10661 * 19 18 17 21 21 C 1.51718 * 107.09385 * 302.31927 * 20 19 18 22 22 H 1.08998 * 110.91013 * 304.13649 * 21 20 19 23 23 C 1.49872 * 111.29787 * 54.10733 * 13 12 11 24 24 C 1.52990 * 109.47510 * 60.00187 * 12 11 10 25 25 C 1.52996 * 109.46993 * 299.99582 * 9 7 2 26 26 H 0.97000 * 120.00596 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47346 * 60.00238 * 9 7 2 28 28 H 1.08997 * 109.47298 * 59.99804 * 10 9 7 29 29 H 1.09002 * 109.47020 * 299.99736 * 10 9 7 30 30 H 1.08995 * 109.46758 * 179.97438 * 11 10 9 31 31 H 1.08997 * 109.47209 * 59.99761 * 11 10 9 32 32 H 1.09005 * 109.47092 * 299.99365 * 12 11 10 33 33 H 1.08996 * 110.21413 * 122.11202 * 14 13 12 34 34 H 1.08999 * 110.27555 * 0.23915 * 14 13 12 35 35 H 1.09004 * 109.92866 * 58.82791 * 17 15 14 36 36 H 1.08998 * 109.93003 * 297.62921 * 17 15 14 37 37 H 1.08997 * 109.05306 * 182.13039 * 18 17 15 38 38 H 1.09006 * 109.05093 * 63.22684 * 18 17 15 39 39 H 1.09000 * 109.04323 * 174.66130 * 19 18 17 40 40 H 1.08997 * 109.04334 * 293.62048 * 19 18 17 41 41 H 1.09004 * 109.92695 * 61.71360 * 20 19 18 42 42 H 1.08997 * 109.92657 * 182.91844 * 20 19 18 43 43 H 1.08995 * 110.44043 * 28.68233 * 23 13 12 44 44 H 1.09000 * 111.24246 * 265.28430 * 23 13 12 45 45 H 1.08997 * 109.47344 * 59.99755 * 24 12 11 46 46 H 1.08998 * 109.47500 * 179.97438 * 24 12 11 47 47 H 1.08997 * 109.47218 * 300.00187 * 25 9 7 48 48 H 1.09002 * 109.46900 * 60.00747 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 0.6021 -5.0683 1.2491 13 7 -0.1319 -6.3408 1.2500 14 6 -0.9057 -6.5092 2.5100 15 6 -0.3469 -7.7651 3.1717 16 1 0.5145 -7.5097 3.7890 17 6 -1.3235 -8.6278 3.9449 18 6 -0.5376 -9.8406 4.4713 19 6 0.1271 -10.6143 3.3371 20 6 1.0046 -9.7007 2.4653 21 6 0.1097 -8.5962 1.9353 22 1 -0.7455 -9.0108 1.4016 23 6 0.7991 -7.5064 1.1058 24 6 -0.3921 -3.9055 1.2503 25 6 0.3720 -2.5805 1.2491 26 1 -0.4851 0.8400 0.0004 27 1 0.6240 -2.5568 -0.8903 28 1 2.8727 -3.6047 0.8876 29 1 2.8712 -3.6039 -0.8923 30 1 2.1887 -5.8155 -0.0026 31 1 0.8527 -5.0447 -0.8904 32 1 1.2298 -5.0107 2.1384 33 1 -1.9645 -6.6404 2.2871 34 1 -0.7622 -5.6458 3.1596 35 1 -2.1256 -8.9621 3.2868 36 1 -1.7380 -8.0629 4.7798 37 1 -1.2203 -10.5038 5.0023 38 1 0.2300 -9.4940 5.1634 39 1 0.7473 -11.4041 3.7610 40 1 -0.6451 -11.0646 2.7135 41 1 1.8070 -9.2726 3.0662 42 1 1.4237 -10.2698 1.6355 43 1 1.7772 -7.2661 1.5225 44 1 0.8883 -7.8140 0.0639 45 1 -1.0198 -3.9631 0.3611 46 1 -1.0180 -3.9635 2.1408 47 1 0.9990 -2.5230 2.1388 48 1 -0.3364 -1.7521 1.2495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330483.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:27 Heat of formation + Delta-G solvation = -46.738800 kcal Electronic energy + Delta-G solvation = -22696.938842 eV Core-core repulsion = 19748.959943 eV Total energy + Delta-G solvation = -2947.978899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27216 -39.23679 -36.61641 -34.53029 -32.60716 -32.06618 -31.40951 -29.36361 -28.19050 -26.44930 -24.13898 -23.34427 -22.23880 -21.71561 -21.31675 -20.85338 -20.27723 -18.39515 -16.96425 -16.51103 -16.28830 -15.75558 -15.49318 -15.25003 -15.09982 -14.74895 -14.69719 -14.23393 -13.96083 -13.74007 -13.58653 -13.22547 -13.06409 -12.97549 -12.88203 -12.65300 -12.54164 -12.33368 -12.19942 -11.94641 -11.87389 -11.80453 -11.65214 -11.60121 -11.37600 -11.21260 -11.05594 -10.75679 -10.64510 -10.47730 -10.35573 -9.18846 -8.06571 -6.20925 1.39405 1.41055 1.52519 2.43687 2.94768 3.19560 3.43563 3.73143 3.79444 3.98550 4.01573 4.17584 4.24839 4.33700 4.42944 4.47747 4.52967 4.56168 4.60466 4.62705 4.65142 4.71655 4.76676 4.82534 4.84059 4.93657 4.96399 4.97763 5.01102 5.07902 5.11812 5.16311 5.27428 5.28606 5.32748 5.36611 5.38081 5.42344 5.44717 5.47256 5.61657 5.62776 5.70846 6.03225 6.04633 6.17287 6.25772 6.42276 6.92003 7.47009 8.97541 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.042205 B = 0.003506 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.276732 B = 7984.151417 C = 8292.247208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.046 3.954 10 C -0.100 4.100 11 C -0.098 4.098 12 C 0.099 3.901 13 N -0.538 5.538 14 C 0.047 3.953 15 C -0.109 4.109 16 H 0.063 0.937 17 C -0.101 4.101 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.104 4.104 21 C -0.092 4.092 22 H 0.083 0.917 23 C 0.048 3.952 24 C -0.095 4.095 25 C -0.098 4.098 26 H 0.259 0.741 27 H -0.008 1.008 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.027 0.973 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.023 0.977 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.834 -21.366 7.791 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.027 3.973 10 C -0.138 4.138 11 C -0.136 4.136 12 C -0.010 4.010 13 N -0.262 5.262 14 C -0.081 4.081 15 C -0.128 4.128 16 H 0.082 0.918 17 C -0.139 4.139 18 C -0.154 4.154 19 C -0.152 4.152 20 C -0.142 4.142 21 C -0.111 4.111 22 H 0.101 0.899 23 C -0.079 4.079 24 C -0.132 4.132 25 C -0.137 4.137 26 H 0.069 0.931 27 H 0.010 0.990 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.042 0.958 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.313 -21.224 7.362 22.503 hybrid contribution 0.816 1.572 0.509 1.842 sum -0.498 -19.653 7.871 21.176 Atomic orbital electron populations 1.70034 1.07151 1.26915 1.51559 1.25758 0.95683 1.02376 0.94955 0.85590 0.79111 0.79873 0.77584 1.19179 1.20660 1.20602 1.21661 0.92984 0.92400 1.50201 0.93144 1.18623 0.93039 0.92329 0.93288 1.21484 0.97871 0.94493 0.99963 1.21509 0.97737 0.97053 0.97288 1.21569 0.93593 0.89167 0.96653 1.64474 1.25032 1.01450 1.35267 1.22636 0.98732 0.97096 0.89590 1.22136 0.99285 0.94495 0.96929 0.91822 1.21291 0.97260 0.95862 0.99448 1.21535 0.99319 0.96619 0.97900 1.21514 0.98990 0.97820 0.96918 1.21372 0.97374 0.96149 0.99321 1.22113 0.99211 0.94848 0.94930 0.89857 1.23017 0.94210 0.89921 1.00708 1.21480 0.97291 0.94191 1.00287 1.21373 0.98751 0.95924 0.97656 0.93135 0.99032 0.93632 0.93322 0.91132 0.92740 0.95487 0.90571 0.93420 0.91319 0.91673 0.90959 0.92544 0.91104 0.91796 0.92270 0.90930 0.93746 0.90040 0.93626 0.92965 0.95771 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.37 11.32 21.45 0.24 -54.13 16 2 C 0.01 0.60 5.30 84.65 0.45 1.05 16 3 Si 0.95 44.60 29.54 68.60 2.03 46.62 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 7 C -0.53 -30.39 8.56 25.60 0.22 -30.17 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.05 2.37 2.10 -11.54 -0.02 2.35 16 10 C -0.10 -4.27 5.14 30.60 0.16 -4.11 16 11 C -0.10 -3.52 5.00 30.59 0.15 -3.37 16 12 C 0.10 3.46 1.58 44.91 0.07 3.54 16 13 N -0.54 -15.98 5.07 -857.75 -4.35 -20.33 16 14 C 0.05 1.22 5.95 85.78 0.51 1.73 16 15 C -0.11 -2.24 2.33 -10.45 -0.02 -2.26 16 16 H 0.06 1.41 7.96 -2.38 -0.02 1.39 16 17 C -0.10 -1.64 5.68 30.38 0.17 -1.46 16 18 C -0.12 -1.57 5.85 30.71 0.18 -1.39 16 19 C -0.11 -1.48 5.84 30.70 0.18 -1.30 16 20 C -0.10 -1.61 5.68 30.44 0.17 -1.44 16 21 C -0.09 -1.79 2.49 -10.13 -0.03 -1.81 16 22 H 0.08 1.65 8.05 -2.39 -0.02 1.63 16 23 C 0.05 1.17 5.00 85.83 0.43 1.60 16 24 C -0.09 -3.86 5.16 30.57 0.16 -3.70 16 25 C -0.10 -4.86 4.98 30.58 0.15 -4.70 16 26 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 27 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 28 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 2.16 6.79 -2.39 -0.02 2.15 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.03 0.98 8.13 -2.38 -0.02 0.96 16 33 H 0.08 1.94 8.07 -2.39 -0.02 1.92 16 34 H 0.05 1.35 6.57 -2.39 -0.02 1.34 16 35 H 0.07 1.10 8.05 -2.39 -0.02 1.08 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.97 7.99 -2.38 -0.02 0.95 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.04 1.10 7.46 -2.39 -0.02 1.09 16 44 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.05 1.98 6.73 -2.39 -0.02 1.96 16 47 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 Total: -1.00 -60.83 347.67 1.73 -59.10 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.88 Total: 14.19 kcal Atomic # 6 Polarization: -48.39 SS G_CDS: 2.93 Total: -45.46 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -4.11 Total: -74.46 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -60.83 1.73 -59.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330483.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.360 kcal (2) G-P(sol) polarization free energy of solvation -60.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds