Wall clock time and date at job start Mon Mar 30 2020 02:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.36879 * 126.39744 * 2 1 4 4 C 1.34667 * 106.81866 * 180.25440 * 3 2 1 5 5 N 1.34129 * 108.01654 * 359.73906 * 4 3 2 6 6 C 1.30499 * 109.25882 * 0.02562 * 5 4 3 7 7 C 1.50697 * 125.64944 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47466 * 90.02130 * 7 6 5 9 9 N 1.46899 * 109.47254 * 179.97438 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 C 1.52993 * 109.47308 * 275.00154 * 10 9 8 12 12 C 1.52994 * 109.47250 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47090 * 60.00224 * 12 11 10 14 14 C 1.50706 * 109.47022 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99931 * 120.00140 * 14 13 12 16 16 C 1.37871 * 119.99624 * 299.99472 * 14 13 12 17 17 N 1.31512 * 120.00252 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99729 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47311 * 60.00146 * 18 16 14 20 20 H 1.48504 * 109.47058 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46927 * 299.99782 * 18 16 14 22 22 C 1.53001 * 109.46490 * 299.99867 * 13 12 11 23 23 C 1.52998 * 109.47053 * 60.00506 * 22 13 12 24 24 H 1.08997 * 109.46902 * 270.18599 * 1 2 3 25 25 H 1.08996 * 109.46652 * 30.18663 * 1 2 3 26 26 H 1.08997 * 109.46650 * 150.18994 * 1 2 3 27 27 H 1.08008 * 126.58963 * 359.97438 * 3 2 1 28 28 H 1.07994 * 125.99151 * 179.72731 * 4 3 2 29 29 H 1.09002 * 109.47120 * 330.01883 * 7 6 5 30 30 H 1.08998 * 109.46862 * 210.02685 * 7 6 5 31 31 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 32 32 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 33 33 H 1.00902 * 111.00582 * 303.95797 * 9 8 7 34 34 H 1.08994 * 109.46818 * 35.00369 * 10 9 8 35 35 H 1.09004 * 109.47538 * 300.00000 * 11 10 9 36 36 H 1.09001 * 109.46997 * 59.99957 * 11 10 9 37 37 H 1.09007 * 109.47107 * 299.99989 * 12 11 10 38 38 H 1.09005 * 109.47279 * 180.02562 * 12 11 10 39 39 H 1.08994 * 109.47221 * 60.00201 * 13 12 11 40 40 H 0.97007 * 119.99974 * 179.97438 * 17 16 14 41 41 H 1.08993 * 109.47557 * 299.99525 * 22 13 12 42 42 H 1.09008 * 109.46885 * 179.97438 * 22 13 12 43 43 H 1.09005 * 109.46987 * 179.97438 * 23 22 13 44 44 H 1.08998 * 109.47427 * 59.99785 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 -0.0057 5 7 3.5096 -0.6903 -0.0033 6 6 2.2664 -1.0870 0.0031 7 6 1.8019 -2.5206 0.0071 8 6 1.6511 -3.0039 1.4509 9 7 1.1977 -4.4011 1.4548 10 6 1.0421 -4.9003 2.8276 11 6 2.3912 -5.4054 3.3427 12 6 2.2293 -5.9247 4.7726 13 6 1.2162 -7.0713 4.7872 14 6 1.0562 -7.5824 6.1959 15 1 0.0891 -7.5503 6.6753 16 6 2.1446 -8.0910 6.8724 17 7 3.3224 -8.1297 6.2886 18 14 1.9462 -8.7252 8.6182 19 1 0.9631 -9.8381 8.6318 20 1 3.2558 -9.2146 9.1189 21 1 1.4621 -7.6263 9.4919 22 6 -0.1330 -6.5661 4.2721 23 6 0.0290 -6.0468 2.8421 24 1 -0.3633 0.0033 1.0276 25 1 -0.3632 0.8883 -0.5167 26 1 -0.3632 -0.8917 -0.5109 27 1 1.9613 2.1346 -0.0004 28 1 4.4369 1.2611 -0.0115 29 1 2.5342 -3.1412 -0.5092 30 1 0.8410 -2.5926 -0.5024 31 1 0.9187 -2.3832 1.9672 32 1 2.6120 -2.9319 1.9604 33 1 0.3405 -4.5047 0.9326 34 1 0.6869 -4.0940 3.4693 35 1 2.7465 -6.2118 2.7010 36 1 3.1128 -4.5885 3.3327 37 1 1.8743 -5.1180 5.4141 38 1 3.1906 -6.2842 5.1398 39 1 1.5712 -7.8779 4.1458 40 1 4.0882 -8.4872 6.7648 41 1 -0.4880 -5.7595 4.9136 42 1 -0.8547 -7.3830 4.2820 43 1 -0.9323 -5.6873 2.4750 44 1 0.3839 -6.8534 2.2006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:10 Heat of formation + Delta-G solvation = 38.541014 kcal Electronic energy + Delta-G solvation = -21351.268019 eV Core-core repulsion = 18303.446787 eV Total energy + Delta-G solvation = -3047.821232 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.23616 -38.23548 -35.49182 -34.20613 -32.92319 -31.44989 -29.69290 -28.88920 -27.48379 -26.79325 -24.24980 -22.71310 -21.54057 -21.47878 -20.38161 -19.78909 -18.63514 -17.25466 -16.27395 -16.05857 -15.56701 -14.89897 -14.80534 -14.52148 -14.11509 -13.78194 -13.47325 -13.25260 -13.10436 -12.94640 -12.81354 -12.69106 -12.26243 -11.84364 -11.53796 -11.25721 -11.14735 -10.92413 -10.65277 -10.44195 -10.32793 -10.12411 -10.07600 -9.78670 -9.78076 -9.28137 -8.86683 -8.62486 -8.52040 -8.23462 -8.15273 -5.91252 -3.97766 1.84960 2.56474 3.01815 3.35148 3.40158 3.42264 4.07455 4.37490 4.48523 4.55377 4.69999 4.75465 4.91258 5.03964 5.09920 5.26990 5.37231 5.41619 5.45113 5.53083 5.58617 5.91430 5.93787 6.00249 6.10650 6.18248 6.36534 6.47184 6.47881 6.60216 6.66651 6.76284 6.79097 6.97937 6.99289 7.19662 7.28929 7.42730 7.60840 7.63103 7.82449 7.99076 8.10071 8.24625 8.54186 9.06301 9.66473 11.14099 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031637 B = 0.003047 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.835339 B = 9188.216725 C = 9552.031102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.461 5.461 3 C -0.066 4.066 4 C -0.027 4.027 5 N -0.486 5.486 6 C 0.214 3.786 7 C -0.033 4.033 8 C 0.069 3.931 9 N -0.686 5.686 10 C 0.093 3.907 11 C -0.102 4.102 12 C -0.109 4.109 13 C 0.049 3.951 14 C -0.515 4.515 15 H 0.052 0.948 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.279 1.279 22 C -0.106 4.106 23 C -0.115 4.115 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.173 0.827 28 H 0.169 0.831 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.021 0.979 32 H 0.081 0.919 33 H 0.332 0.668 34 H 0.035 0.965 35 H 0.059 0.941 36 H 0.039 0.961 37 H 0.029 0.971 38 H 0.092 0.908 39 H 0.026 0.974 40 H 0.260 0.740 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.041 0.959 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.674 16.589 -13.958 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.144 5.144 3 C -0.198 4.198 4 C -0.176 4.176 5 N -0.205 5.205 6 C -0.049 4.049 7 C -0.072 4.072 8 C -0.062 4.062 9 N -0.316 5.316 10 C -0.015 4.015 11 C -0.140 4.140 12 C -0.148 4.148 13 C 0.031 3.969 14 C -0.553 4.553 15 H 0.070 0.930 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.144 4.144 23 C -0.153 4.153 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.190 0.810 28 H 0.186 0.814 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.040 0.960 32 H 0.100 0.900 33 H 0.149 0.851 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.110 0.890 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.324 15.775 -14.002 21.754 hybrid contribution -1.612 0.962 1.292 2.279 sum -6.936 16.737 -12.710 22.131 Atomic orbital electron populations 1.22052 0.76842 1.04574 1.03758 1.45330 1.07515 1.06751 1.54794 1.22671 0.91465 0.92451 1.13221 1.22326 0.96401 0.91289 1.07559 1.70294 1.18499 1.11907 1.19772 1.23277 0.85754 0.90843 1.04978 1.20001 1.02013 0.86519 0.98664 1.21874 1.01138 0.88658 0.94480 1.60543 1.36849 1.18197 1.16045 1.21604 0.97557 0.95766 0.86603 1.21602 0.94091 0.99426 0.98899 1.21625 1.03955 0.97439 0.91777 1.18646 0.89255 0.93474 0.95528 1.21201 0.94751 1.40156 0.99179 0.92984 1.24965 0.95415 0.95846 0.97766 1.69872 0.99669 1.46160 1.37088 0.86728 0.77151 0.79228 0.85265 1.20384 1.21344 1.20426 1.21597 1.00727 0.99075 0.93001 1.21719 0.96245 0.97786 0.99554 0.90438 0.89646 0.89393 0.81023 0.81362 0.87687 0.90783 0.96041 0.90045 0.85058 0.94680 0.92181 0.94217 0.95242 0.88951 0.95598 0.93035 0.93676 0.93364 0.94075 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 10.97 59.85 0.66 1.06 16 2 N -0.46 -4.52 3.15 -121.28 -0.38 -4.90 16 3 C -0.07 -0.62 11.58 -16.56 -0.19 -0.82 16 4 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 5 N -0.49 -7.05 11.25 -10.82 -0.12 -7.17 16 6 C 0.21 2.64 7.16 -155.42 -1.11 1.53 16 7 C -0.03 -0.35 5.79 -27.89 -0.16 -0.52 16 8 C 0.07 0.89 5.47 -3.83 -0.02 0.87 16 9 N -0.69 -9.56 6.31 -106.73 -0.67 -10.24 16 10 C 0.09 1.58 2.49 -67.72 -0.17 1.41 16 11 C -0.10 -2.06 5.42 -26.74 -0.15 -2.20 16 12 C -0.11 -2.62 4.98 -26.73 -0.13 -2.75 16 13 C 0.05 1.23 2.10 -91.77 -0.19 1.04 16 14 C -0.51 -14.25 8.56 -34.44 -0.29 -14.54 16 15 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.73 11.32 55.43 0.63 -25.10 16 18 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 C -0.11 -2.18 5.14 -26.73 -0.14 -2.32 16 23 C -0.12 -1.97 5.20 -26.73 -0.14 -2.10 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.41 7.04 -51.93 -0.37 0.04 16 27 H 0.17 1.03 8.06 -52.48 -0.42 0.60 16 28 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 0.61 7.06 -51.93 -0.37 0.24 16 31 H 0.02 0.27 8.06 -51.93 -0.42 -0.15 16 32 H 0.08 1.26 7.44 -51.93 -0.39 0.87 16 33 H 0.33 3.90 8.35 -39.29 -0.33 3.57 16 34 H 0.04 0.62 7.80 -51.93 -0.40 0.21 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.04 0.78 7.45 -51.93 -0.39 0.39 16 37 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 43 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 347.74 15.07 5.24 5.24 Total: -1.00 -31.72 347.74 -10.26 -41.99 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.59 Total: 1.96 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -2.35 Total: -18.26 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.55 Total: -47.41 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.72 -10.26 -41.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.528 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds