Wall clock time and date at job start Mon Mar 30 2020 02:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00250 * 2 1 4 4 H 1.48499 * 109.47471 * 269.99827 * 3 2 1 5 5 H 1.48503 * 109.47189 * 29.99783 * 3 2 1 6 6 H 1.48497 * 109.47154 * 149.99673 * 3 2 1 7 7 C 1.37883 * 119.99506 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99687 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00262 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47039 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47054 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47120 * 300.00055 * 11 10 9 13 13 N 1.46907 * 109.47122 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99727 * 154.99959 * 13 12 11 15 15 H 1.08999 * 110.12322 * 326.57193 * 14 13 12 16 16 C 1.54467 * 110.09400 * 88.15326 * 14 13 12 17 17 C 1.54958 * 104.22647 * 142.73432 * 16 14 13 18 18 C 1.55063 * 102.85456 * 322.43950 * 17 16 14 19 19 C 1.53176 * 110.08800 * 205.00175 * 14 13 12 20 20 C 1.53022 * 115.34941 * 110.74480 * 19 14 13 21 21 C 1.53923 * 86.94780 * 267.77808 * 20 19 14 22 22 C 1.53011 * 115.36747 * 10.42511 * 19 14 13 23 23 C 1.53004 * 109.47689 * 60.00161 * 12 11 10 24 24 C 1.53001 * 109.47199 * 299.99807 * 9 7 2 25 25 H 0.97003 * 119.99670 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47009 * 59.99728 * 9 7 2 27 27 H 1.08992 * 109.47252 * 60.00405 * 10 9 7 28 28 H 1.08998 * 109.46924 * 299.99831 * 10 9 7 29 29 H 1.08997 * 109.47242 * 179.97438 * 11 10 9 30 30 H 1.09003 * 109.46903 * 59.99749 * 11 10 9 31 31 H 1.09001 * 109.47412 * 299.99930 * 12 11 10 32 32 H 1.00898 * 111.00029 * 278.95373 * 13 12 11 33 33 H 1.08996 * 110.47947 * 24.04673 * 16 14 13 34 34 H 1.08994 * 110.47668 * 261.41472 * 16 14 13 35 35 H 1.08997 * 110.73225 * 204.10238 * 17 16 14 36 36 H 1.08991 * 110.73743 * 80.77803 * 17 16 14 37 37 H 1.08999 * 110.52671 * 278.67242 * 18 17 16 38 38 H 1.09002 * 110.64146 * 155.98693 * 18 17 16 39 39 H 1.09002 * 113.65308 * 22.31411 * 20 19 14 40 40 H 1.09003 * 113.65112 * 153.24495 * 20 19 14 41 41 H 1.08996 * 113.59098 * 89.77370 * 21 20 19 42 42 H 1.09001 * 113.59001 * 220.59901 * 21 20 19 43 43 H 1.09001 * 113.64990 * 206.64525 * 22 19 14 44 44 H 1.08998 * 113.64995 * 337.58043 * 22 19 14 45 45 H 1.09001 * 109.46883 * 59.99444 * 23 12 11 46 46 H 1.08998 * 109.47411 * 180.02562 * 23 12 11 47 47 H 1.08996 * 109.47204 * 300.00540 * 24 9 7 48 48 H 1.09007 * 109.47156 * 60.00044 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 6 0.5999 -5.0672 1.2513 13 7 -0.1351 -6.3392 1.2516 14 6 -0.5025 -6.7345 2.6179 15 1 0.2657 -6.4124 3.3209 16 6 -1.8652 -6.1161 3.0010 17 6 -2.5590 -7.2158 3.8439 18 6 -2.1331 -8.5219 3.1247 19 6 -0.6833 -8.2535 2.6955 20 6 0.3814 -8.9997 3.5025 21 6 1.1439 -9.1770 2.1772 22 6 -0.2151 -9.0331 1.4649 23 6 -0.3944 -3.9043 1.2501 24 6 0.3709 -2.5800 1.2495 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 2.8710 -3.6041 0.8922 28 1 2.8724 -3.6048 -0.8877 29 1 2.1883 -5.8156 0.0029 30 1 0.8538 -5.0455 -0.8878 31 1 1.2262 -5.0089 2.1416 32 1 -0.9500 -6.2860 0.6591 33 1 -2.4488 -5.8958 2.1071 34 1 -1.7210 -5.2140 3.5955 35 1 -3.6421 -7.0963 3.8177 36 1 -2.1929 -7.2036 4.8705 37 1 -2.7628 -8.7011 2.2533 38 1 -2.1786 -9.3695 3.8086 39 1 0.9017 -8.3717 4.2258 40 1 0.0275 -9.9368 3.9321 41 1 1.8378 -8.3647 1.9611 42 1 1.5957 -10.1623 2.0623 43 1 -0.7354 -9.9804 1.3234 44 1 -0.1739 -8.4323 0.5563 45 1 -1.0206 -3.9627 0.3599 46 1 -1.0211 -3.9611 2.1401 47 1 0.9972 -2.5220 2.1397 48 1 -0.3375 -1.7514 1.2491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173333112.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:55 Heat of formation + Delta-G solvation = -11.817649 kcal Electronic energy + Delta-G solvation = -22911.103152 eV Core-core repulsion = 19964.638548 eV Total energy + Delta-G solvation = -2946.464604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39342 -37.85995 -35.24659 -33.77038 -31.97562 -29.63427 -28.75991 -27.29845 -25.88861 -25.52469 -23.85717 -21.62409 -21.38026 -20.73959 -20.48199 -18.89665 -17.80062 -16.29916 -15.85025 -15.68974 -14.93953 -14.64419 -14.37072 -13.93177 -13.35003 -13.21493 -13.01537 -12.84327 -12.54197 -12.41403 -12.30423 -11.89911 -11.83073 -11.47925 -11.29383 -10.97401 -10.92800 -10.88839 -10.68074 -10.66374 -10.42963 -10.38085 -10.13601 -10.03636 -9.93581 -9.91064 -9.84605 -9.31411 -8.94006 -8.61105 -8.29059 -7.87295 -5.94235 -4.00154 3.31987 3.38745 3.42174 4.29878 4.46544 4.47239 4.59380 4.78613 4.99698 5.03355 5.23044 5.23915 5.34155 5.39324 5.52991 5.58368 5.61278 5.73174 5.75389 5.78568 5.82809 5.89903 5.91731 6.00239 6.03270 6.11833 6.14683 6.23898 6.26942 6.35611 6.42540 6.47856 6.48641 6.53416 6.64987 6.71806 6.74225 6.86825 6.99258 7.18448 7.27978 7.48214 7.59654 7.73942 7.79514 8.07625 8.20491 8.52670 9.04389 9.64287 11.11030 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.031587 B = 0.003976 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.227396 B = 7041.005626 C = 7583.246758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.109 4.109 11 C -0.100 4.100 12 C 0.092 3.908 13 N -0.676 5.676 14 C 0.109 3.891 15 H 0.077 0.923 16 C -0.151 4.151 17 C -0.123 4.123 18 C -0.111 4.111 19 C -0.075 4.075 20 C -0.130 4.130 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.144 4.144 24 C -0.105 4.105 25 H 0.258 0.742 26 H 0.023 0.977 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.338 0.662 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.051 0.949 46 H 0.043 0.957 47 H 0.030 0.970 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 -17.235 6.215 18.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.147 4.147 11 C -0.138 4.138 12 C -0.017 4.017 13 N -0.305 5.305 14 C -0.002 4.002 15 H 0.095 0.905 16 C -0.190 4.190 17 C -0.161 4.161 18 C -0.149 4.149 19 C -0.076 4.076 20 C -0.168 4.168 21 C -0.170 4.170 22 C -0.159 4.159 23 C -0.183 4.183 24 C -0.144 4.144 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.156 0.844 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.049 0.951 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.238 -17.497 6.191 18.841 hybrid contribution -0.357 1.671 0.304 1.735 sum -3.595 -15.827 6.495 17.481 Atomic orbital electron populations 1.69884 1.05841 1.26164 1.51180 1.24966 0.94817 0.98941 0.95296 0.86666 0.79928 0.83784 0.78040 1.20774 1.21338 1.19995 1.21270 0.92878 0.90888 1.49953 0.92873 1.18641 0.92626 0.91528 0.94133 1.21622 0.98608 0.94504 0.99936 1.21477 0.97847 0.97744 0.96707 1.21672 0.94851 0.86423 0.98769 1.60743 1.28382 1.32357 1.08968 1.21844 0.95195 0.92380 0.90739 0.90500 1.23234 0.97235 0.98264 1.00259 1.22454 0.99639 0.95108 0.98888 1.22290 0.95773 0.97221 0.99627 1.21880 0.93674 0.94563 0.97452 1.22933 0.97483 0.99696 0.96671 1.22772 0.97057 1.01063 0.96088 1.22722 0.95876 0.98687 0.98611 1.22364 0.98143 0.97916 0.99906 1.21534 0.99420 0.94769 0.98667 0.93195 0.95883 0.93661 0.93531 0.93216 0.92934 0.91504 0.84356 0.91401 0.91541 0.92048 0.91783 0.91696 0.92053 0.92045 0.90763 0.89795 0.92694 0.91742 0.89216 0.93048 0.93883 0.95099 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.12 8.56 -34.44 -0.29 -14.42 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 10 C -0.11 -2.26 5.14 -26.73 -0.14 -2.40 16 11 C -0.10 -1.75 5.53 -26.73 -0.15 -1.89 16 12 C 0.09 1.50 2.47 -67.71 -0.17 1.34 16 13 N -0.68 -9.14 4.16 -98.83 -0.41 -9.55 16 14 C 0.11 1.34 2.79 -66.85 -0.19 1.16 16 15 H 0.08 1.04 7.03 -51.93 -0.37 0.68 16 16 C -0.15 -1.79 4.97 -24.93 -0.12 -1.91 16 17 C -0.12 -1.25 6.91 -24.61 -0.17 -1.42 16 18 C -0.11 -1.09 6.20 -25.35 -0.16 -1.25 16 19 C -0.08 -0.81 1.12 -154.11 -0.17 -0.98 16 20 C -0.13 -1.34 7.27 -26.24 -0.19 -1.53 16 21 C -0.13 -1.44 7.94 -25.67 -0.20 -1.64 16 22 C -0.12 -1.32 7.03 -26.14 -0.18 -1.50 16 23 C -0.14 -2.68 4.97 -26.75 -0.13 -2.81 16 24 C -0.11 -2.44 4.97 -26.76 -0.13 -2.58 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.15 7.43 -51.93 -0.39 0.77 16 32 H 0.34 4.54 7.83 -39.29 -0.31 4.24 16 33 H 0.07 0.84 7.56 -51.93 -0.39 0.44 16 34 H 0.07 0.85 7.38 -51.93 -0.38 0.47 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 38 H 0.06 0.55 7.80 -51.93 -0.41 0.15 16 39 H 0.06 0.65 7.86 -51.93 -0.41 0.24 16 40 H 0.07 0.69 7.94 -51.93 -0.41 0.27 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 44 H 0.09 1.08 6.65 -51.93 -0.35 0.74 16 45 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 46 H 0.04 0.75 5.96 -51.93 -0.31 0.44 16 47 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 LS Contribution 350.99 15.07 5.29 5.29 Total: -1.00 -26.90 350.99 -11.27 -38.17 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -9.07 Total: 3.82 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -2.69 Total: -29.23 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.22 Total: -34.45 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -26.90 -11.27 -38.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333112.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.356 kcal (2) G-P(sol) polarization free energy of solvation -26.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds