Wall clock time and date at job start Mon Mar 30 2020 02:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00250 * 2 1 4 4 H 1.48499 * 109.47471 * 269.99827 * 3 2 1 5 5 H 1.48503 * 109.47189 * 29.99783 * 3 2 1 6 6 H 1.48497 * 109.47154 * 149.99673 * 3 2 1 7 7 C 1.37883 * 119.99506 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99687 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00262 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47039 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47054 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47120 * 300.00055 * 11 10 9 13 13 N 1.46907 * 109.47122 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99727 * 154.99959 * 13 12 11 15 15 H 1.08999 * 110.12322 * 326.57193 * 14 13 12 16 16 C 1.54467 * 110.09400 * 88.15326 * 14 13 12 17 17 C 1.54958 * 104.22647 * 142.73432 * 16 14 13 18 18 C 1.55063 * 102.85456 * 322.43950 * 17 16 14 19 19 C 1.53176 * 110.08800 * 205.00175 * 14 13 12 20 20 C 1.53022 * 115.34941 * 110.74480 * 19 14 13 21 21 C 1.53923 * 86.94780 * 267.77808 * 20 19 14 22 22 C 1.53011 * 115.36747 * 10.42511 * 19 14 13 23 23 C 1.53004 * 109.47689 * 60.00161 * 12 11 10 24 24 C 1.53001 * 109.47199 * 299.99807 * 9 7 2 25 25 H 0.97003 * 119.99670 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47009 * 59.99728 * 9 7 2 27 27 H 1.08992 * 109.47252 * 60.00405 * 10 9 7 28 28 H 1.08998 * 109.46924 * 299.99831 * 10 9 7 29 29 H 1.08997 * 109.47242 * 179.97438 * 11 10 9 30 30 H 1.09003 * 109.46903 * 59.99749 * 11 10 9 31 31 H 1.09001 * 109.47412 * 299.99930 * 12 11 10 32 32 H 1.00898 * 111.00029 * 278.95373 * 13 12 11 33 33 H 1.08996 * 110.47947 * 24.04673 * 16 14 13 34 34 H 1.08994 * 110.47668 * 261.41472 * 16 14 13 35 35 H 1.08997 * 110.73225 * 204.10238 * 17 16 14 36 36 H 1.08991 * 110.73743 * 80.77803 * 17 16 14 37 37 H 1.08999 * 110.52671 * 278.67242 * 18 17 16 38 38 H 1.09002 * 110.64146 * 155.98693 * 18 17 16 39 39 H 1.09002 * 113.65308 * 22.31411 * 20 19 14 40 40 H 1.09003 * 113.65112 * 153.24495 * 20 19 14 41 41 H 1.08996 * 113.59098 * 89.77370 * 21 20 19 42 42 H 1.09001 * 113.59001 * 220.59901 * 21 20 19 43 43 H 1.09001 * 113.64990 * 206.64525 * 22 19 14 44 44 H 1.08998 * 113.64995 * 337.58043 * 22 19 14 45 45 H 1.09001 * 109.46883 * 59.99444 * 23 12 11 46 46 H 1.08998 * 109.47411 * 180.02562 * 23 12 11 47 47 H 1.08996 * 109.47204 * 300.00540 * 24 9 7 48 48 H 1.09007 * 109.47156 * 60.00044 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 6 0.5999 -5.0672 1.2513 13 7 -0.1351 -6.3392 1.2516 14 6 -0.5025 -6.7345 2.6179 15 1 0.2657 -6.4124 3.3209 16 6 -1.8652 -6.1161 3.0010 17 6 -2.5590 -7.2158 3.8439 18 6 -2.1331 -8.5219 3.1247 19 6 -0.6833 -8.2535 2.6955 20 6 0.3814 -8.9997 3.5025 21 6 1.1439 -9.1770 2.1772 22 6 -0.2151 -9.0331 1.4649 23 6 -0.3944 -3.9043 1.2501 24 6 0.3709 -2.5800 1.2495 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 2.8710 -3.6041 0.8922 28 1 2.8724 -3.6048 -0.8877 29 1 2.1883 -5.8156 0.0029 30 1 0.8538 -5.0455 -0.8878 31 1 1.2262 -5.0089 2.1416 32 1 -0.9500 -6.2860 0.6591 33 1 -2.4488 -5.8958 2.1071 34 1 -1.7210 -5.2140 3.5955 35 1 -3.6421 -7.0963 3.8177 36 1 -2.1929 -7.2036 4.8705 37 1 -2.7628 -8.7011 2.2533 38 1 -2.1786 -9.3695 3.8086 39 1 0.9017 -8.3717 4.2258 40 1 0.0275 -9.9368 3.9321 41 1 1.8378 -8.3647 1.9611 42 1 1.5957 -10.1623 2.0623 43 1 -0.7354 -9.9804 1.3234 44 1 -0.1739 -8.4323 0.5563 45 1 -1.0206 -3.9627 0.3599 46 1 -1.0211 -3.9611 2.1401 47 1 0.9972 -2.5220 2.1397 48 1 -0.3375 -1.7514 1.2491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173333112.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:54 Heat of formation + Delta-G solvation = -23.494369 kcal Electronic energy + Delta-G solvation = -22911.609493 eV Core-core repulsion = 19964.638548 eV Total energy + Delta-G solvation = -2946.970945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.33680 -39.37928 -36.40122 -35.19868 -33.70398 -31.31309 -30.32233 -28.26678 -27.12954 -26.48766 -25.48840 -23.23069 -22.33979 -22.12610 -21.59918 -20.51364 -18.80700 -18.38946 -17.02438 -16.63216 -16.51958 -15.89678 -15.59995 -15.07360 -14.85289 -14.80763 -14.36961 -13.98724 -13.89860 -13.64938 -13.61656 -13.22593 -13.02792 -12.90611 -12.81637 -12.59377 -12.45088 -12.14703 -11.98379 -11.85352 -11.81873 -11.73267 -11.63310 -11.50883 -11.25056 -11.02241 -10.79943 -10.75407 -10.69995 -10.49941 -10.35916 -9.12267 -8.07024 -6.21313 1.39455 1.40218 1.50314 2.43084 3.17665 3.21349 3.58892 3.73934 3.85816 3.98022 4.14247 4.17705 4.22663 4.34654 4.37188 4.47280 4.56133 4.60782 4.64089 4.73607 4.79103 4.82984 4.85025 4.89957 4.99998 5.00687 5.02254 5.06958 5.10137 5.15288 5.20466 5.24689 5.27038 5.29383 5.38510 5.41524 5.44301 5.48403 5.59012 5.61550 5.68622 5.70284 5.80531 6.05147 6.21883 6.28361 6.43058 6.58428 6.91825 7.46624 8.96159 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.031587 B = 0.003976 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.227396 B = 7041.005626 C = 7583.246758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.046 3.954 10 C -0.102 4.102 11 C -0.090 4.090 12 C 0.106 3.894 13 N -0.665 5.665 14 C 0.108 3.892 15 H 0.065 0.935 16 C -0.152 4.152 17 C -0.118 4.118 18 C -0.107 4.107 19 C -0.074 4.074 20 C -0.126 4.126 21 C -0.134 4.134 22 C -0.119 4.119 23 C -0.131 4.131 24 C -0.097 4.097 25 H 0.259 0.741 26 H -0.009 1.009 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.341 0.659 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.044 0.956 46 H 0.055 0.945 47 H 0.022 0.978 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 -19.004 6.934 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.067 0.933 9 C 0.028 3.972 10 C -0.140 4.140 11 C -0.128 4.128 12 C -0.004 4.004 13 N -0.293 5.293 14 C -0.002 4.002 15 H 0.083 0.917 16 C -0.191 4.191 17 C -0.156 4.156 18 C -0.144 4.144 19 C -0.075 4.075 20 C -0.163 4.163 21 C -0.171 4.171 22 C -0.157 4.157 23 C -0.170 4.170 24 C -0.136 4.136 25 H 0.068 0.932 26 H 0.009 0.991 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.041 0.959 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.276 -19.282 6.911 20.744 hybrid contribution -0.348 2.237 0.071 2.265 sum -3.624 -17.045 6.982 18.773 Atomic orbital electron populations 1.70028 1.07113 1.26886 1.51629 1.25727 0.95655 1.02264 0.94959 0.85677 0.78814 0.79697 0.78211 1.20183 1.20903 1.19362 1.21667 0.92988 0.92574 1.50175 0.93279 1.18616 0.93064 0.92273 0.93256 1.21493 0.97903 0.94806 0.99769 1.21368 0.98031 0.96305 0.97141 1.21411 0.94231 0.86759 0.97972 1.60729 1.28564 1.29990 1.10016 1.21890 0.95040 0.93840 0.89478 0.91665 1.23194 0.97158 0.98477 1.00267 1.22436 0.99988 0.94470 0.98736 1.22274 0.94793 0.97388 0.99970 1.21829 0.94685 0.93105 0.97837 1.22942 0.96935 1.00195 0.96239 1.22737 0.96852 1.00978 0.96558 1.22713 0.96001 0.99069 0.97879 1.22230 0.98225 0.96396 1.00175 1.21324 0.98606 0.96167 0.97520 0.93212 0.99100 0.93736 0.93740 0.91236 0.93134 0.91937 0.83978 0.91862 0.92805 0.91196 0.91387 0.91427 0.90614 0.92579 0.89116 0.91562 0.91662 0.90388 0.90528 0.93701 0.92614 0.95932 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.90 11.32 21.45 0.24 -53.66 16 2 C 0.01 0.69 5.30 84.66 0.45 1.14 16 3 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.54 -30.29 8.56 25.60 0.22 -30.07 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.71 16 9 C 0.05 2.36 2.10 -11.54 -0.02 2.33 16 10 C -0.10 -4.25 5.14 30.59 0.16 -4.10 16 11 C -0.09 -3.10 5.53 30.59 0.17 -2.93 16 12 C 0.11 3.40 2.47 44.91 0.11 3.51 16 13 N -0.66 -17.13 4.16 -466.60 -1.94 -19.07 16 14 C 0.11 2.50 2.79 45.47 0.13 2.63 16 15 H 0.07 1.69 7.03 -2.39 -0.02 1.68 16 16 C -0.15 -3.41 4.97 31.76 0.16 -3.25 16 17 C -0.12 -2.13 6.91 31.97 0.22 -1.91 16 18 C -0.11 -1.78 6.20 31.49 0.20 -1.58 16 19 C -0.07 -1.41 1.12 -51.92 -0.06 -1.47 16 20 C -0.13 -2.26 7.27 30.91 0.22 -2.04 16 21 C -0.13 -2.62 7.94 31.28 0.25 -2.37 16 22 C -0.12 -2.30 7.03 30.97 0.22 -2.08 16 23 C -0.13 -4.91 4.97 30.58 0.15 -4.75 16 24 C -0.10 -4.66 4.97 30.58 0.15 -4.51 16 25 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 2.10 7.43 -2.39 -0.02 2.09 16 32 H 0.34 8.71 7.83 -89.70 -0.70 8.00 16 33 H 0.06 1.48 7.56 -2.39 -0.02 1.46 16 34 H 0.05 1.34 7.38 -2.39 -0.02 1.32 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.11 8.11 -2.39 -0.02 1.09 16 38 H 0.08 1.08 7.80 -2.39 -0.02 1.06 16 39 H 0.06 1.08 7.86 -2.39 -0.02 1.06 16 40 H 0.09 1.36 7.94 -2.39 -0.02 1.34 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.08 1.31 8.13 -2.39 -0.02 1.29 16 44 H 0.08 1.70 6.65 -2.39 -0.02 1.68 16 45 H 0.04 1.73 8.13 -2.39 -0.02 1.71 16 46 H 0.06 1.93 5.96 -2.39 -0.01 1.92 16 47 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.05 2.95 6.07 -2.38 -0.01 2.94 16 Total: -1.00 -58.60 350.99 3.25 -55.35 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.20 Total: 22.38 kcal Atomic # 6 Polarization: -54.16 SS G_CDS: 2.72 Total: -51.44 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -1.70 Total: -72.73 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -58.60 3.25 -55.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333112.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.856 kcal (2) G-P(sol) polarization free energy of solvation -58.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds