Wall clock time and date at job start Mon Mar 30 2020 02:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 120.00080 * 2 1 4 4 H 1.48503 * 109.46715 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47428 * 59.99703 * 3 2 1 6 6 H 1.48505 * 109.46625 * 299.99455 * 3 2 1 7 7 C 1.37877 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99561 * 173.32659 * 7 2 1 9 9 C 1.50693 * 120.00163 * 353.33195 * 7 2 1 10 10 C 1.53004 * 109.47116 * 208.47371 * 9 7 2 11 11 C 1.52996 * 109.47141 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47042 * 60.00301 * 11 10 9 13 13 N 1.46910 * 109.47240 * 180.02562 * 12 11 10 14 14 C 1.46900 * 110.99535 * 274.99811 * 13 12 11 15 15 H 1.09001 * 115.55860 * 350.69749 * 14 13 12 16 16 C 1.53038 * 117.50199 * 136.44154 * 14 13 12 17 17 C 1.52806 * 59.96301 * 107.47197 * 16 14 13 18 18 C 1.53152 * 117.75116 * 107.63452 * 17 16 14 19 19 C 1.53171 * 108.88708 * 199.61533 * 18 17 16 20 20 C 1.52934 * 109.45572 * 303.43673 * 19 18 17 21 21 C 1.52941 * 109.82317 * 62.97951 * 20 19 18 22 22 C 1.53154 * 117.74934 * 252.37016 * 17 16 14 23 23 C 1.53000 * 109.47248 * 299.99754 * 12 11 10 24 24 C 1.52998 * 109.47237 * 88.47568 * 9 7 2 25 25 H 0.96995 * 119.99823 * 174.57149 * 1 2 3 26 26 H 1.08998 * 109.47331 * 328.47189 * 9 7 2 27 27 H 1.08994 * 109.47337 * 300.00124 * 10 9 7 28 28 H 1.09005 * 109.46800 * 60.00345 * 10 9 7 29 29 H 1.09006 * 109.47590 * 300.00254 * 11 10 9 30 30 H 1.08998 * 109.47431 * 179.97438 * 11 10 9 31 31 H 1.09002 * 109.47617 * 59.99861 * 12 11 10 32 32 H 1.00893 * 110.99906 * 38.95462 * 13 12 11 33 33 H 1.08998 * 117.49896 * 214.95211 * 16 14 13 34 34 H 1.09005 * 117.50377 * 359.97438 * 16 14 13 35 35 H 1.09005 * 109.56952 * 319.43572 * 18 17 16 36 36 H 1.08998 * 109.57096 * 79.79241 * 18 17 16 37 37 H 1.09003 * 109.47665 * 183.44240 * 19 18 17 38 38 H 1.09008 * 109.47443 * 63.43135 * 19 18 17 39 39 H 1.09003 * 109.41155 * 302.87598 * 20 19 18 40 40 H 1.09002 * 109.41759 * 183.09162 * 20 19 18 41 41 H 1.08999 * 109.47844 * 177.02413 * 21 20 19 42 42 H 1.09003 * 109.47451 * 57.00874 * 21 20 19 43 43 H 1.09007 * 109.56836 * 280.19533 * 22 17 16 44 44 H 1.08990 * 109.56910 * 40.55305 * 22 17 16 45 45 H 1.09002 * 109.47451 * 299.99779 * 23 12 11 46 46 H 1.09007 * 109.47454 * 180.02562 * 23 12 11 47 47 H 1.09001 * 109.47214 * 299.99615 * 24 9 7 48 48 H 1.09002 * 109.47617 * 59.99949 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 1.2124 6 1 1.8905 2.3963 -1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0791 -1.1973 -0.1082 9 6 1.2587 -2.4946 0.1526 10 6 2.1698 -3.5308 0.8139 11 6 1.4124 -4.8510 0.9689 12 6 0.9813 -5.3565 -0.4093 13 7 0.2535 -6.6239 -0.2605 14 6 1.1822 -7.7607 -0.2037 15 1 2.2222 -7.5303 -0.4346 16 6 0.9134 -8.8411 0.8464 17 6 0.6506 -9.1284 -0.6312 18 6 1.6149 -10.0714 -1.3568 19 6 1.4879 -9.8450 -2.8664 20 6 0.0335 -10.0516 -3.2919 21 6 -0.8587 -9.0126 -2.6109 22 6 -0.8072 -9.2124 -1.0931 23 6 0.0702 -4.3205 -1.0706 24 6 0.8281 -2.9999 -1.2258 25 1 -0.4849 -0.8362 -0.0795 26 1 0.3769 -2.3373 0.7737 27 1 3.0516 -3.6882 0.1929 28 1 2.4765 -3.1708 1.7960 29 1 0.5306 -4.6934 1.5901 30 1 2.0616 -5.5893 1.4395 31 1 1.8629 -5.5143 -1.0307 32 1 -0.3443 -6.6043 0.5521 33 1 1.7768 -9.3213 1.3068 34 1 0.0477 -8.7080 1.4953 35 1 2.6370 -9.8622 -1.0410 36 1 1.3621 -11.1049 -1.1201 37 1 2.1253 -10.5538 -3.3951 38 1 1.7964 -8.8279 -3.1085 39 1 -0.2899 -11.0517 -3.0032 40 1 -0.0463 -9.9444 -4.3737 41 1 -1.8850 -9.1311 -2.9584 42 1 -0.5046 -8.0117 -2.8579 43 1 -1.2147 -10.1912 -0.8397 44 1 -1.3911 -8.4338 -0.6023 45 1 -0.8115 -4.1628 -0.4494 46 1 -0.2373 -4.6808 -2.0524 47 1 0.1789 -2.2618 -1.6969 48 1 1.7099 -3.1573 -1.8469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:57 Heat of formation + Delta-G solvation = -26.642520 kcal Electronic energy + Delta-G solvation = -22437.151252 eV Core-core repulsion = 19490.043793 eV Total energy + Delta-G solvation = -2947.107459 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.75144 -38.00986 -35.48996 -33.54832 -31.56538 -30.88392 -29.93425 -27.99889 -26.84288 -23.91195 -22.83475 -21.81033 -21.64472 -21.12059 -20.73452 -19.16347 -18.32431 -16.77666 -15.81613 -15.55093 -14.98480 -14.37754 -13.87276 -13.74275 -13.62040 -13.52817 -13.39896 -13.27554 -13.08963 -12.50223 -12.28575 -12.18233 -11.79220 -11.66334 -11.42240 -11.25320 -11.13927 -11.11680 -10.84884 -10.71810 -10.48020 -10.35121 -10.26300 -10.17174 -10.09939 -10.04711 -9.54445 -9.41216 -9.08162 -8.40662 -8.21345 -7.93062 -6.29706 -3.99993 3.45974 3.49057 3.62780 3.70988 4.16169 4.56977 4.64518 4.69094 4.75885 4.96917 5.06510 5.13097 5.26487 5.30888 5.35653 5.37911 5.48107 5.50575 5.58640 5.63089 5.73407 5.77744 5.79826 5.85157 5.90879 5.97340 6.00222 6.12021 6.15454 6.16328 6.24100 6.29427 6.32068 6.39146 6.44878 6.46638 6.60163 6.67054 6.75419 6.91462 7.05284 7.20185 7.35072 7.52634 7.59446 7.73328 8.32717 8.52090 8.94754 9.71816 11.08942 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.033616 B = 0.003464 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.745448 B = 8080.274068 C = 8305.724426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.019 3.981 3 Si 1.068 2.932 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.593 4.593 8 H 0.046 0.954 9 C 0.031 3.969 10 C -0.098 4.098 11 C -0.143 4.143 12 C 0.096 3.904 13 N -0.651 5.651 14 C 0.043 3.957 15 H 0.103 0.897 16 C -0.204 4.204 17 C -0.113 4.113 18 C -0.079 4.079 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.069 4.069 23 C -0.104 4.104 24 C -0.106 4.106 25 H 0.271 0.729 26 H 0.030 0.970 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.339 0.661 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.558 -20.556 -2.305 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.185 4.185 3 Si 0.897 3.103 4 H -0.216 1.216 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.631 4.631 8 H 0.065 0.935 9 C 0.012 3.988 10 C -0.136 4.136 11 C -0.183 4.183 12 C -0.013 4.013 13 N -0.279 5.279 14 C -0.068 4.068 15 H 0.121 0.879 16 C -0.243 4.243 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.150 4.150 22 C -0.107 4.107 23 C -0.142 4.142 24 C -0.145 4.145 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.158 0.842 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.230 -18.953 -2.918 19.178 hybrid contribution 0.634 -1.597 0.906 1.943 sum 0.863 -20.551 -2.012 20.667 Atomic orbital electron populations 1.70716 1.06888 1.30998 1.46538 1.25763 0.96526 1.02452 0.93722 0.83580 0.74584 0.75277 0.76893 1.21621 1.21362 1.21543 1.22028 0.94623 0.91980 1.54455 0.93520 1.18867 0.95068 0.93202 0.91656 1.21495 0.98401 0.93579 1.00162 1.22297 1.00172 0.98653 0.97131 1.21655 0.95982 0.87768 0.95890 1.60366 1.20535 1.01617 1.45340 1.22546 0.95806 0.86825 1.01643 0.87907 1.23568 1.03190 1.05327 0.92205 1.21737 0.96732 0.97950 0.95041 1.21108 0.97579 0.98146 0.94871 1.21488 0.96612 1.01801 0.95398 1.21483 0.95288 0.99139 0.99582 1.21445 0.98758 0.99835 0.94977 1.20923 0.93203 1.00690 0.95867 1.21578 0.98026 0.95293 0.99323 1.21747 0.98281 0.93683 1.00808 0.91739 0.95220 0.93671 0.93320 0.92642 0.93743 0.91085 0.84198 0.89204 0.88943 0.92246 0.91912 0.92494 0.91753 0.92577 0.92514 0.92667 0.91028 0.92932 0.91135 0.92952 0.93011 0.92822 0.93876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.53 13.55 55.43 0.75 -26.78 16 2 C 0.02 0.55 5.45 -17.82 -0.10 0.45 16 3 Si 1.07 25.39 29.91 -169.99 -5.08 20.30 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.59 -16.53 8.30 -34.44 -0.29 -16.82 16 8 H 0.05 1.31 7.82 -52.48 -0.41 0.90 16 9 C 0.03 0.75 1.73 -91.77 -0.16 0.59 16 10 C -0.10 -2.04 5.19 -26.73 -0.14 -2.18 16 11 C -0.14 -2.44 5.18 -26.73 -0.14 -2.58 16 12 C 0.10 1.54 2.43 -67.71 -0.16 1.38 16 13 N -0.65 -8.78 5.41 -99.80 -0.54 -9.32 16 14 C 0.04 0.52 5.77 -67.78 -0.39 0.13 16 15 H 0.10 1.31 7.60 -51.93 -0.39 0.91 16 16 C -0.20 -2.14 9.69 -26.81 -0.26 -2.40 16 17 C -0.11 -1.20 1.97 -154.53 -0.31 -1.50 16 18 C -0.08 -0.76 5.67 -26.56 -0.15 -0.91 16 19 C -0.12 -1.09 5.93 -26.68 -0.16 -1.25 16 20 C -0.12 -1.09 5.82 -26.80 -0.16 -1.25 16 21 C -0.11 -1.18 5.93 -26.67 -0.16 -1.34 16 22 C -0.07 -0.73 5.45 -26.56 -0.14 -0.88 16 23 C -0.10 -1.90 5.53 -26.70 -0.15 -2.05 16 24 C -0.11 -2.37 5.10 -26.71 -0.14 -2.50 16 25 H 0.27 8.09 6.38 -40.82 -0.26 7.83 16 26 H 0.03 0.79 6.98 -51.93 -0.36 0.43 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.07 1.19 7.57 -51.93 -0.39 0.79 16 32 H 0.34 4.44 8.26 -39.30 -0.32 4.12 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.81 7.36 -51.93 -0.38 0.43 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 47 H 0.05 1.31 7.69 -51.93 -0.40 0.91 16 48 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -28.35 361.36 -11.74 -40.09 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -9.32 Total: 3.37 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: -2.99 Total: -33.11 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.21 Total: -36.10 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.35 -11.74 -40.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.450 kcal (2) G-P(sol) polarization free energy of solvation -28.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds