Wall clock time and date at job start Mon Mar 30 2020 02:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 120.00080 * 2 1 4 4 H 1.48503 * 109.46715 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47428 * 59.99703 * 3 2 1 6 6 H 1.48505 * 109.46625 * 299.99455 * 3 2 1 7 7 C 1.37877 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99561 * 173.32659 * 7 2 1 9 9 C 1.50693 * 120.00163 * 353.33195 * 7 2 1 10 10 C 1.53004 * 109.47116 * 208.47371 * 9 7 2 11 11 C 1.52996 * 109.47141 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47042 * 60.00301 * 11 10 9 13 13 N 1.46910 * 109.47240 * 180.02562 * 12 11 10 14 14 C 1.46900 * 110.99535 * 274.99811 * 13 12 11 15 15 H 1.09001 * 115.55860 * 350.69749 * 14 13 12 16 16 C 1.53038 * 117.50199 * 136.44154 * 14 13 12 17 17 C 1.52806 * 59.96301 * 107.47197 * 16 14 13 18 18 C 1.53152 * 117.75116 * 107.63452 * 17 16 14 19 19 C 1.53171 * 108.88708 * 199.61533 * 18 17 16 20 20 C 1.52934 * 109.45572 * 303.43673 * 19 18 17 21 21 C 1.52941 * 109.82317 * 62.97951 * 20 19 18 22 22 C 1.53154 * 117.74934 * 252.37016 * 17 16 14 23 23 C 1.53000 * 109.47248 * 299.99754 * 12 11 10 24 24 C 1.52998 * 109.47237 * 88.47568 * 9 7 2 25 25 H 0.96995 * 119.99823 * 174.57149 * 1 2 3 26 26 H 1.08998 * 109.47331 * 328.47189 * 9 7 2 27 27 H 1.08994 * 109.47337 * 300.00124 * 10 9 7 28 28 H 1.09005 * 109.46800 * 60.00345 * 10 9 7 29 29 H 1.09006 * 109.47590 * 300.00254 * 11 10 9 30 30 H 1.08998 * 109.47431 * 179.97438 * 11 10 9 31 31 H 1.09002 * 109.47617 * 59.99861 * 12 11 10 32 32 H 1.00893 * 110.99906 * 38.95462 * 13 12 11 33 33 H 1.08998 * 117.49896 * 214.95211 * 16 14 13 34 34 H 1.09005 * 117.50377 * 359.97438 * 16 14 13 35 35 H 1.09005 * 109.56952 * 319.43572 * 18 17 16 36 36 H 1.08998 * 109.57096 * 79.79241 * 18 17 16 37 37 H 1.09003 * 109.47665 * 183.44240 * 19 18 17 38 38 H 1.09008 * 109.47443 * 63.43135 * 19 18 17 39 39 H 1.09003 * 109.41155 * 302.87598 * 20 19 18 40 40 H 1.09002 * 109.41759 * 183.09162 * 20 19 18 41 41 H 1.08999 * 109.47844 * 177.02413 * 21 20 19 42 42 H 1.09003 * 109.47451 * 57.00874 * 21 20 19 43 43 H 1.09007 * 109.56836 * 280.19533 * 22 17 16 44 44 H 1.08990 * 109.56910 * 40.55305 * 22 17 16 45 45 H 1.09002 * 109.47451 * 299.99779 * 23 12 11 46 46 H 1.09007 * 109.47454 * 180.02562 * 23 12 11 47 47 H 1.09001 * 109.47214 * 299.99615 * 24 9 7 48 48 H 1.09002 * 109.47617 * 59.99949 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 1.2124 6 1 1.8905 2.3963 -1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0791 -1.1973 -0.1082 9 6 1.2587 -2.4946 0.1526 10 6 2.1698 -3.5308 0.8139 11 6 1.4124 -4.8510 0.9689 12 6 0.9813 -5.3565 -0.4093 13 7 0.2535 -6.6239 -0.2605 14 6 1.1822 -7.7607 -0.2037 15 1 2.2222 -7.5303 -0.4346 16 6 0.9134 -8.8411 0.8464 17 6 0.6506 -9.1284 -0.6312 18 6 1.6149 -10.0714 -1.3568 19 6 1.4879 -9.8450 -2.8664 20 6 0.0335 -10.0516 -3.2919 21 6 -0.8587 -9.0126 -2.6109 22 6 -0.8072 -9.2124 -1.0931 23 6 0.0702 -4.3205 -1.0706 24 6 0.8281 -2.9999 -1.2258 25 1 -0.4849 -0.8362 -0.0795 26 1 0.3769 -2.3373 0.7737 27 1 3.0516 -3.6882 0.1929 28 1 2.4765 -3.1708 1.7960 29 1 0.5306 -4.6934 1.5901 30 1 2.0616 -5.5893 1.4395 31 1 1.8629 -5.5143 -1.0307 32 1 -0.3443 -6.6043 0.5521 33 1 1.7768 -9.3213 1.3068 34 1 0.0477 -8.7080 1.4953 35 1 2.6370 -9.8622 -1.0410 36 1 1.3621 -11.1049 -1.1201 37 1 2.1253 -10.5538 -3.3951 38 1 1.7964 -8.8279 -3.1085 39 1 -0.2899 -11.0517 -3.0032 40 1 -0.0463 -9.9444 -4.3737 41 1 -1.8850 -9.1311 -2.9584 42 1 -0.5046 -8.0117 -2.8579 43 1 -1.2147 -10.1912 -0.8397 44 1 -1.3911 -8.4338 -0.6023 45 1 -0.8115 -4.1628 -0.4494 46 1 -0.2373 -4.6808 -2.0524 47 1 0.1789 -2.2618 -1.6969 48 1 1.7099 -3.1573 -1.8469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:57 Heat of formation + Delta-G solvation = -39.705372 kcal Electronic energy + Delta-G solvation = -22437.717700 eV Core-core repulsion = 19490.043793 eV Total energy + Delta-G solvation = -2947.673907 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.70873 -39.46686 -36.62169 -35.15540 -33.16242 -31.70027 -31.57611 -29.45817 -27.84281 -25.88154 -23.64322 -23.38533 -22.78240 -22.28060 -21.86629 -20.74427 -19.26307 -18.87037 -16.93540 -16.54376 -16.06369 -15.66762 -15.48091 -15.23491 -15.03682 -14.79363 -14.68009 -14.36889 -14.20647 -13.75100 -13.37780 -13.30328 -13.10052 -13.02191 -12.94014 -12.66828 -12.55927 -12.24724 -12.01834 -11.96527 -11.92459 -11.89902 -11.80358 -11.62368 -11.31211 -11.11014 -10.91851 -10.81297 -10.54096 -10.38370 -10.24215 -9.02879 -8.57775 -6.28060 1.51736 1.60398 1.76636 2.57900 2.81313 3.12776 3.21107 3.77978 3.83734 3.87703 3.94131 3.99958 4.14257 4.26619 4.28997 4.34591 4.44500 4.48612 4.50985 4.56968 4.63500 4.70576 4.70767 4.74217 4.83941 4.87286 4.91134 4.94069 5.02865 5.05302 5.09727 5.13646 5.16820 5.19518 5.20607 5.30725 5.34976 5.39396 5.40861 5.46024 5.61707 5.62887 5.65334 5.82714 6.15264 6.19779 6.29082 6.45599 6.70438 7.51344 8.81206 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.033616 B = 0.003464 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.745448 B = 8080.274068 C = 8305.724426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.033 4.033 3 Si 1.113 2.887 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.606 4.606 8 H 0.040 0.960 9 C 0.026 3.974 10 C -0.092 4.092 11 C -0.131 4.131 12 C 0.110 3.890 13 N -0.646 5.646 14 C 0.024 3.976 15 H 0.098 0.902 16 C -0.192 4.192 17 C -0.107 4.107 18 C -0.079 4.079 19 C -0.115 4.115 20 C -0.115 4.115 21 C -0.112 4.112 22 C -0.069 4.069 23 C -0.093 4.093 24 C -0.096 4.096 25 H 0.260 0.740 26 H 0.000 1.000 27 H 0.046 0.954 28 H 0.039 0.961 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.342 0.658 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.045 0.955 46 H 0.061 0.939 47 H 0.021 0.979 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.369 -22.683 -2.148 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.231 4.231 3 Si 0.936 3.064 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.644 4.644 8 H 0.059 0.941 9 C 0.007 3.993 10 C -0.131 4.131 11 C -0.170 4.170 12 C 0.001 3.999 13 N -0.274 5.274 14 C -0.086 4.086 15 H 0.116 0.884 16 C -0.230 4.230 17 C -0.109 4.109 18 C -0.116 4.116 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.149 4.149 22 C -0.107 4.107 23 C -0.132 4.132 24 C -0.135 4.135 25 H 0.070 0.930 26 H 0.018 0.982 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.162 0.838 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.040 0.960 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.045 -21.114 -2.759 21.319 hybrid contribution 0.380 -0.979 0.846 1.348 sum 1.424 -22.093 -1.913 22.221 Atomic orbital electron populations 1.70833 1.07818 1.30372 1.48798 1.27161 0.96630 1.06211 0.93056 0.82990 0.74317 0.71761 0.77343 1.19829 1.20558 1.20787 1.22435 0.94552 0.93781 1.53675 0.94145 1.18861 0.94339 0.93436 0.92617 1.21361 0.98036 0.94559 0.99124 1.22187 0.99946 0.96946 0.97962 1.21369 0.95350 0.88331 0.94893 1.60283 1.20573 1.00812 1.45765 1.22558 0.95321 0.86810 1.03935 0.88386 1.23605 1.03654 1.03696 0.92077 1.21806 0.96882 0.96787 0.95390 1.21136 0.97437 0.98449 0.94582 1.21484 0.96910 1.01174 0.95696 1.21472 0.94913 0.99187 0.99699 1.21416 0.99272 0.98987 0.95247 1.20922 0.93148 1.00919 0.95680 1.21420 0.97681 0.93921 1.00131 1.21525 0.97967 0.95030 0.99000 0.93014 0.98196 0.93526 0.94231 0.92895 0.91334 0.91238 0.83803 0.88041 0.88610 0.91934 0.90667 0.91139 0.93452 0.91442 0.92186 0.92210 0.93335 0.91768 0.92235 0.93580 0.92040 0.96004 0.94004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.26 13.55 21.45 0.29 -57.97 16 2 C -0.03 -1.90 5.45 84.65 0.46 -1.44 16 3 Si 1.11 51.35 29.91 68.60 2.05 53.41 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.61 -34.56 8.30 25.60 0.21 -34.35 16 8 H 0.04 2.30 7.82 -2.91 -0.02 2.28 16 9 C 0.03 1.32 1.73 -11.54 -0.02 1.30 16 10 C -0.09 -3.84 5.19 30.59 0.16 -3.68 16 11 C -0.13 -4.30 5.18 30.59 0.16 -4.15 16 12 C 0.11 3.42 2.43 44.91 0.11 3.53 16 13 N -0.65 -16.48 5.41 -469.66 -2.54 -19.02 16 14 C 0.02 0.54 5.77 44.87 0.26 0.80 16 15 H 0.10 2.29 7.60 -2.39 -0.02 2.28 16 16 C -0.19 -3.48 9.69 30.54 0.30 -3.18 16 17 C -0.11 -2.02 1.97 -52.20 -0.10 -2.12 16 18 C -0.08 -1.28 5.67 30.70 0.17 -1.11 16 19 C -0.12 -1.94 5.93 30.63 0.18 -1.75 16 20 C -0.12 -1.90 5.82 30.55 0.18 -1.73 16 21 C -0.11 -2.19 5.93 30.63 0.18 -2.01 16 22 C -0.07 -1.32 5.45 30.71 0.17 -1.16 16 23 C -0.09 -3.42 5.53 30.61 0.17 -3.26 16 24 C -0.10 -4.41 5.10 30.61 0.16 -4.25 16 25 H 0.26 16.21 6.38 -92.71 -0.59 15.62 16 26 H 0.00 -0.01 6.98 -2.39 -0.02 -0.03 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.05 1.77 8.13 -2.38 -0.02 1.75 16 30 H 0.07 1.96 8.07 -2.39 -0.02 1.94 16 31 H 0.07 2.22 7.57 -2.39 -0.02 2.21 16 32 H 0.34 8.40 8.26 -89.70 -0.74 7.66 16 33 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.10 1.70 8.09 -2.38 -0.02 1.68 16 35 H 0.06 0.99 8.09 -2.38 -0.02 0.97 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.06 1.27 7.36 -2.39 -0.02 1.25 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 47 H 0.02 1.10 7.69 -2.39 -0.02 1.08 16 48 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -62.05 361.36 2.87 -59.18 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.33 Total: 22.96 kcal Atomic # 6 Polarization: -61.30 SS G_CDS: 2.74 Total: -58.56 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -2.25 Total: -76.99 kcal Atomic # 14 Polarization: 51.35 SS G_CDS: 2.05 Total: 53.41 kcal Total: -62.05 2.87 -59.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.479 kcal (2) G-P(sol) polarization free energy of solvation -62.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds