Wall clock time and date at job start Mon Mar 30 2020 02:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99916 * 2 1 4 4 H 1.48494 * 109.47512 * 270.00151 * 3 2 1 5 5 H 1.48500 * 109.47266 * 30.00372 * 3 2 1 6 6 H 1.48501 * 109.47226 * 150.00182 * 3 2 1 7 7 C 1.37874 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00139 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00255 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47429 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47031 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47145 * 299.99869 * 11 10 9 13 13 N 1.46899 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.47136 * 111.00312 * 56.04747 * 13 12 11 15 15 C 1.52705 * 108.59416 * 171.47236 * 14 13 12 16 16 C 1.53135 * 110.50631 * 61.31546 * 15 14 13 17 17 H 1.08994 * 111.63935 * 72.87182 * 16 15 14 18 18 C 1.55085 * 106.86092 * 196.53971 * 16 15 14 19 19 C 1.53988 * 106.37243 * 90.95738 * 18 16 15 20 20 C 1.54553 * 106.60538 * 1.40748 * 19 18 16 21 21 C 1.54045 * 110.35044 * 307.96746 * 16 15 14 22 22 H 1.08995 * 109.57909 * 169.89174 * 21 16 15 23 23 C 1.46687 * 110.99772 * 293.45567 * 13 12 11 24 24 C 1.52997 * 109.47049 * 60.00142 * 12 11 10 25 25 C 1.52994 * 109.47514 * 300.00046 * 24 12 11 26 26 H 0.96998 * 120.00102 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46761 * 59.99469 * 9 7 2 28 28 H 1.09001 * 109.46893 * 60.00083 * 10 9 7 29 29 H 1.08999 * 109.47122 * 299.99944 * 10 9 7 30 30 H 1.09002 * 109.46653 * 180.02562 * 11 10 9 31 31 H 1.09001 * 109.47300 * 60.00227 * 11 10 9 32 32 H 1.09001 * 109.47315 * 300.00349 * 12 11 10 33 33 H 1.08994 * 109.61623 * 51.73644 * 14 13 12 34 34 H 1.08999 * 109.61326 * 291.20108 * 14 13 12 35 35 H 1.09002 * 109.26300 * 181.56931 * 15 14 13 36 36 H 1.09002 * 109.26259 * 301.05658 * 15 14 13 37 37 H 1.09009 * 110.07561 * 210.18478 * 18 16 15 38 38 H 1.09003 * 110.07531 * 331.66774 * 18 16 15 39 39 H 1.08993 * 110.03713 * 120.72156 * 19 18 16 40 40 H 1.09007 * 110.02950 * 242.11376 * 19 18 16 41 41 H 1.09003 * 110.65589 * 264.61594 * 20 19 18 42 42 H 1.08999 * 110.58493 * 141.63890 * 20 19 18 43 43 H 1.09000 * 109.07992 * 304.59841 * 23 13 12 44 44 H 1.09003 * 109.07506 * 63.63918 * 23 13 12 45 45 H 1.09001 * 109.46893 * 59.99949 * 24 12 11 46 46 H 1.09000 * 109.47119 * 179.97438 * 24 12 11 47 47 H 1.09001 * 109.46961 * 299.99861 * 25 24 12 48 48 H 1.09001 * 109.47628 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 6 6.0616 -1.9153 -1.2502 13 7 7.5306 -1.9157 -1.2504 14 6 8.0575 -3.2862 -1.1559 15 6 9.5682 -3.2432 -1.3743 16 6 10.2424 -2.3926 -0.2940 17 1 10.2560 -2.9028 0.6690 18 6 11.6642 -2.0523 -0.8116 19 6 11.5415 -0.7192 -1.5727 20 6 10.0637 -0.2808 -1.4602 21 6 9.5653 -1.0122 -0.1989 22 1 9.9293 -0.4868 0.6839 23 6 8.0566 -1.1005 -0.1503 24 6 5.5515 -0.4728 -1.2503 25 6 4.0216 -0.4728 -1.2503 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6803 0.8888 28 1 3.6579 -3.1505 -0.8907 29 1 3.6586 -3.1501 0.8892 30 1 5.9149 -3.6641 -0.0013 31 1 5.9149 -2.1225 0.8890 32 1 5.6983 -2.4291 -2.1402 33 1 7.5948 -3.9098 -1.9208 34 1 7.8420 -3.6938 -0.1682 35 1 9.9664 -4.2571 -1.3342 36 1 9.7779 -2.8131 -2.3537 37 1 12.3514 -1.9422 0.0274 38 1 12.0157 -2.8362 -1.4824 39 1 12.1894 0.0307 -1.1191 40 1 11.8104 -0.8609 -2.6195 41 1 9.5000 -0.6003 -2.3368 42 1 9.9932 0.7991 -1.3303 43 1 7.6385 -0.0963 -0.2194 44 1 7.7572 -1.5464 0.7983 45 1 5.9148 0.0411 -0.3603 46 1 5.9152 0.0411 -2.1401 47 1 3.6583 -0.9866 -2.1403 48 1 3.6582 0.5549 -1.2509 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173335173.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:42 Heat of formation + Delta-G solvation = -24.297620 kcal Electronic energy + Delta-G solvation = -23213.094356 eV Core-core repulsion = 20266.088580 eV Total energy + Delta-G solvation = -2947.005776 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.39866 -38.20047 -35.36266 -32.57679 -31.80931 -30.44899 -30.11618 -28.53685 -27.27101 -24.51279 -23.39584 -22.86091 -21.54730 -20.39408 -20.18744 -19.14829 -18.00668 -16.63850 -16.42737 -15.52610 -15.19658 -14.71150 -14.35663 -14.22188 -13.74539 -13.68807 -13.25984 -13.09570 -12.90247 -12.68819 -12.27724 -12.24774 -11.76805 -11.71355 -11.52964 -11.36093 -11.22585 -10.93253 -10.80623 -10.75411 -10.55347 -10.45430 -10.39674 -10.13823 -10.10452 -9.86732 -9.79483 -9.53371 -8.95814 -8.89088 -8.48664 -7.97753 -6.03736 -4.02142 3.29752 3.40067 3.42525 4.07055 4.42687 4.44399 4.53133 4.59110 5.04737 5.11931 5.17139 5.24760 5.31159 5.34051 5.35955 5.39113 5.51167 5.54140 5.58310 5.66447 5.71830 5.72101 5.77144 5.87568 5.90839 5.96857 6.02823 6.04414 6.07556 6.13852 6.14410 6.20467 6.25981 6.31655 6.35972 6.44264 6.46397 6.59457 6.64226 6.79109 6.95294 7.03440 7.29589 7.32577 7.38071 7.61610 7.83208 8.57267 9.00835 9.59643 11.09823 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.032827 B = 0.004431 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.743105 B = 6317.507392 C = 6854.399340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.512 4.512 8 H 0.072 0.928 9 C 0.015 3.985 10 C -0.094 4.094 11 C -0.149 4.149 12 C 0.089 3.911 13 N -0.523 5.523 14 C 0.050 3.950 15 C -0.107 4.107 16 C -0.088 4.088 17 H 0.073 0.927 18 C -0.120 4.120 19 C -0.124 4.124 20 C -0.113 4.113 21 C -0.083 4.083 22 H 0.068 0.932 23 C 0.053 3.947 24 C -0.114 4.114 25 C -0.118 4.118 26 H 0.262 0.738 27 H 0.023 0.977 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.036 0.964 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.033 0.967 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.775 -3.782 -2.287 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.550 4.550 8 H 0.090 0.910 9 C -0.004 4.004 10 C -0.132 4.132 11 C -0.188 4.188 12 C -0.019 4.019 13 N -0.246 5.246 14 C -0.078 4.078 15 C -0.145 4.145 16 C -0.106 4.106 17 H 0.091 0.909 18 C -0.157 4.157 19 C -0.162 4.162 20 C -0.151 4.151 21 C -0.102 4.102 22 H 0.086 0.914 23 C -0.075 4.075 24 C -0.152 4.152 25 C -0.156 4.156 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 22.797 -3.461 -2.754 23.222 hybrid contribution 0.058 0.620 0.794 1.009 sum 22.855 -2.841 -1.960 23.114 Atomic orbital electron populations 1.69905 1.06315 1.26835 1.51222 1.25032 0.94665 0.99051 0.94568 0.86830 0.79850 0.83588 0.77847 1.20612 1.22722 1.19112 1.21102 0.89067 0.94343 1.50469 0.91010 1.19139 0.96326 0.91869 0.93075 1.21364 0.91796 0.99122 1.00898 1.22251 0.98728 0.99273 0.98588 1.21747 0.85143 0.97162 0.97817 1.62641 1.07731 1.10340 1.43912 1.22103 0.95005 0.90550 1.00181 1.21600 0.94529 0.98943 0.99422 1.21991 0.94591 0.95872 0.98183 0.90866 1.22386 0.96619 0.97338 0.99380 1.22180 0.97337 0.96740 0.99957 1.22257 0.94850 0.99084 0.98900 1.21456 0.94461 0.95759 0.98497 0.91351 1.21680 0.94001 0.99066 0.92719 1.21721 0.97507 0.94905 1.01032 1.21947 0.92093 1.00204 1.01344 0.92772 0.95901 0.92783 0.92983 0.93046 0.92597 0.90072 0.91027 0.94534 0.92278 0.91088 0.92417 0.91962 0.92413 0.92234 0.90063 0.92302 0.90228 0.94834 0.92588 0.92457 0.92180 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 2 C 0.07 1.97 5.45 -17.82 -0.10 1.88 16 3 Si 0.89 22.26 24.37 -169.99 -4.14 18.11 16 4 H -0.28 -6.81 6.87 56.52 0.39 -6.43 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 6 H -0.27 -6.38 6.53 56.52 0.37 -6.02 16 7 C -0.51 -14.42 9.14 -34.44 -0.31 -14.74 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 9 C 0.01 0.34 1.69 -91.77 -0.16 0.19 16 10 C -0.09 -1.85 5.14 -26.73 -0.14 -1.98 16 11 C -0.15 -2.42 4.45 -26.73 -0.12 -2.54 16 12 C 0.09 1.38 2.35 -67.72 -0.16 1.22 16 13 N -0.52 -6.98 4.33 -227.95 -0.99 -7.96 16 14 C 0.05 0.58 4.66 -3.85 -0.02 0.57 16 15 C -0.11 -1.07 4.83 -26.81 -0.13 -1.20 16 16 C -0.09 -0.86 3.49 -88.90 -0.31 -1.17 16 17 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 18 C -0.12 -1.02 6.14 -25.11 -0.15 -1.18 16 19 C -0.12 -1.10 6.72 -25.40 -0.17 -1.27 16 20 C -0.11 -1.17 5.76 -25.35 -0.15 -1.32 16 21 C -0.08 -0.89 2.83 -90.42 -0.26 -1.15 16 22 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 23 C 0.05 0.69 4.09 -4.85 -0.02 0.67 16 24 C -0.11 -1.98 4.75 -26.74 -0.13 -2.11 16 25 C -0.12 -2.51 4.68 -26.73 -0.13 -2.64 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.76 6.55 -51.93 -0.34 0.42 16 31 H 0.06 0.93 6.64 -51.93 -0.34 0.58 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 34 H 0.04 0.45 6.73 -51.93 -0.35 0.10 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.75 7.12 -51.93 -0.37 0.38 16 37 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.06 0.50 7.77 -51.93 -0.40 0.10 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.95 7.24 -51.93 -0.38 0.58 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 1.10 5.90 -51.93 -0.31 0.79 16 44 H 0.03 0.46 6.60 -51.93 -0.34 0.11 16 45 H 0.06 0.98 6.23 -51.93 -0.32 0.66 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.05 1.06 3.28 -51.93 -0.17 0.89 16 LS Contribution 332.72 15.07 5.01 5.01 Total: -1.00 -29.04 332.72 -10.58 -39.62 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -8.79 Total: -0.81 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -2.44 Total: -26.78 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.21 Total: -35.16 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.04 -10.58 -39.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335173.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.323 kcal (2) G-P(sol) polarization free energy of solvation -29.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds