Wall clock time and date at job start Mon Mar 30 2020 02:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00089 * 2 1 4 4 H 1.48504 * 109.46575 * 269.99501 * 3 2 1 5 5 H 1.48495 * 109.47178 * 29.99243 * 3 2 1 6 6 H 1.48501 * 109.47337 * 149.99748 * 3 2 1 7 7 C 1.37875 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00378 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47355 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47198 * 300.00257 * 10 9 7 12 12 C 1.53005 * 109.46683 * 299.99868 * 11 10 9 13 13 N 1.46909 * 109.46780 * 180.02562 * 12 11 10 14 14 C 1.46331 * 110.99945 * 56.04177 * 13 12 11 15 15 C 1.53856 * 111.78838 * 178.37825 * 14 13 12 16 16 C 1.51615 * 106.96023 * 56.26830 * 15 14 13 17 17 H 1.09003 * 109.76425 * 56.45221 * 16 15 14 18 18 C 1.52368 * 117.08945 * 182.47446 * 16 15 14 19 19 C 1.54987 * 105.22775 * 146.77527 * 18 16 15 20 20 C 1.55400 * 106.35581 * 356.23438 * 19 18 16 21 21 C 1.53125 * 102.83011 * 335.98625 * 20 19 18 22 22 H 1.08996 * 110.34514 * 284.05055 * 21 20 19 23 23 C 1.47691 * 110.99785 * 288.59647 * 13 12 11 24 24 C 1.52998 * 109.47196 * 60.00130 * 12 11 10 25 25 C 1.52997 * 109.47182 * 59.99890 * 9 7 2 26 26 H 0.97003 * 119.99425 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47235 * 300.00015 * 9 7 2 28 28 H 1.09004 * 109.47550 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.46967 * 60.00278 * 10 9 7 30 30 H 1.08998 * 109.47264 * 180.02562 * 11 10 9 31 31 H 1.08994 * 109.47271 * 59.99524 * 11 10 9 32 32 H 1.08991 * 109.47233 * 299.99372 * 12 11 10 33 33 H 1.09002 * 109.01482 * 57.79142 * 14 13 12 34 34 H 1.08996 * 109.02036 * 298.97263 * 14 13 12 35 35 H 1.09006 * 109.95812 * 175.63045 * 15 14 13 36 36 H 1.09002 * 109.96072 * 296.90733 * 15 14 13 37 37 H 1.08995 * 110.29351 * 27.83302 * 18 16 15 38 38 H 1.08998 * 110.36982 * 265.74669 * 18 16 15 39 39 H 1.09007 * 110.07753 * 237.01816 * 19 18 16 40 40 H 1.08994 * 110.08428 * 115.46133 * 19 18 16 41 41 H 1.08995 * 110.74631 * 217.64394 * 20 19 18 42 42 H 1.08998 * 110.89226 * 94.39058 * 20 19 18 43 43 H 1.09000 * 109.93575 * 304.41344 * 23 13 12 44 44 H 1.09003 * 109.93490 * 65.64347 * 23 13 12 45 45 H 1.08996 * 109.46962 * 59.99651 * 24 12 11 46 46 H 1.09000 * 109.46967 * 179.97438 * 24 12 11 47 47 H 1.09005 * 109.47522 * 180.02562 * 25 9 7 48 48 H 1.09000 * 109.47437 * 299.99949 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5468 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 3.1249 -3.5810 -1.2487 12 6 2.2452 -3.6620 -2.4979 13 7 3.0899 -3.5848 -3.6974 14 6 4.1154 -4.6286 -3.6847 15 6 4.9858 -4.5896 -4.9528 16 6 5.5737 -3.1950 -5.0430 17 1 6.1246 -2.9675 -4.1304 18 6 6.4376 -2.8835 -6.2587 19 6 6.1862 -1.3849 -6.5637 20 6 5.1008 -0.9098 -5.5580 21 6 4.3801 -2.2113 -5.1956 22 1 3.7201 -2.5177 -6.0071 23 6 3.6323 -2.2228 -3.8760 24 6 1.2511 -2.4991 -2.4979 25 6 0.3719 -2.5804 -1.2490 26 1 -0.4849 0.8401 -0.0004 27 1 0.6240 -2.5566 0.8903 28 1 1.7003 -4.6061 0.0010 29 1 2.8719 -3.6043 0.8906 30 1 3.8329 -4.4098 -1.2489 31 1 3.6699 -2.6371 -1.2487 32 1 1.7003 -4.6059 -2.4980 33 1 3.6302 -5.6024 -3.6168 34 1 4.7531 -4.4895 -2.8118 35 1 5.7857 -5.3264 -4.8779 36 1 4.3730 -4.7925 -5.8311 37 1 6.1335 -3.4979 -7.1061 38 1 7.4900 -3.0511 -6.0293 39 1 5.8267 -1.2662 -7.5859 40 1 7.1040 -0.8147 -6.4207 41 1 4.4151 -0.2082 -6.0329 42 1 5.5579 -0.4629 -4.6752 43 1 2.8178 -1.4991 -3.9040 44 1 4.3147 -1.9846 -3.0600 45 1 1.7961 -1.5552 -2.4979 46 1 0.6247 -2.5566 -3.3881 47 1 -0.1735 -3.5242 -1.2488 48 1 -0.3364 -1.7520 -1.2495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173335176.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:46 Heat of formation + Delta-G solvation = -26.925823 kcal Electronic energy + Delta-G solvation = -23582.960710 eV Core-core repulsion = 20635.840966 eV Total energy + Delta-G solvation = -2947.119744 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.08164 -37.95145 -35.23073 -32.51693 -31.65417 -30.02724 -29.64080 -27.76235 -26.99378 -24.64068 -23.35934 -22.28292 -21.02490 -20.13356 -20.08159 -19.42662 -18.36386 -15.82055 -15.53875 -15.10518 -14.87545 -14.63458 -14.35467 -14.04700 -13.67707 -13.36936 -13.20622 -12.86816 -12.66653 -12.54444 -12.18601 -11.58613 -11.42632 -11.34878 -11.18607 -11.02697 -10.93036 -10.81561 -10.68166 -10.52000 -10.46743 -10.39692 -10.35713 -10.11805 -10.04039 -9.77747 -9.37887 -9.18834 -8.82580 -8.58692 -8.23799 -7.60865 -5.93521 -3.97597 3.30417 3.38157 3.40617 4.24748 4.46363 4.52590 4.72891 4.77396 5.19450 5.27638 5.36786 5.37573 5.47274 5.58138 5.60715 5.68933 5.71953 5.77937 5.81136 5.85839 5.88690 6.02717 6.03212 6.09044 6.09430 6.16081 6.23448 6.26784 6.33593 6.42998 6.46729 6.53724 6.55854 6.66961 6.68464 6.78081 6.83555 6.89875 7.14426 7.20834 7.47942 7.60257 7.63603 7.73067 7.80357 8.00179 8.21513 8.53147 9.04544 9.65235 11.12308 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.006115 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.925017 B = 4577.887036 C = 5574.688085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.880 3.120 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.498 4.498 8 H 0.052 0.948 9 C 0.043 3.957 10 C -0.103 4.103 11 C -0.135 4.135 12 C 0.096 3.904 13 N -0.545 5.545 14 C 0.060 3.940 15 C -0.104 4.104 16 C -0.100 4.100 17 H 0.066 0.934 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.091 4.091 22 H 0.081 0.919 23 C 0.067 3.933 24 C -0.095 4.095 25 C -0.107 4.107 26 H 0.258 0.742 27 H 0.023 0.977 28 H 0.032 0.968 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.037 0.963 45 H 0.074 0.926 46 H 0.038 0.962 47 H 0.013 0.987 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.515 -6.329 -11.181 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.708 3.292 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.536 4.536 8 H 0.070 0.930 9 C 0.025 3.975 10 C -0.141 4.141 11 C -0.174 4.174 12 C -0.011 4.011 13 N -0.268 5.268 14 C -0.068 4.068 15 C -0.141 4.141 16 C -0.119 4.119 17 H 0.085 0.915 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.157 4.157 21 C -0.110 4.110 22 H 0.099 0.901 23 C -0.061 4.061 24 C -0.133 4.133 25 C -0.145 4.145 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.057 0.943 47 H 0.032 0.968 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.087 -6.304 -11.573 16.007 hybrid contribution 1.035 1.088 0.763 1.684 sum 10.122 -5.216 -10.810 15.700 Atomic orbital electron populations 1.69869 1.05761 1.26095 1.51220 1.24915 0.94727 0.98648 0.95560 0.86780 0.79993 0.84292 0.78091 1.20721 1.21339 1.20128 1.21107 0.92527 0.90465 1.49537 0.93000 1.18693 0.92671 0.92011 0.94137 1.21494 0.98149 0.98643 0.95811 1.22045 0.98299 1.00610 0.96475 1.21680 0.93553 0.99670 0.86239 1.61487 1.22325 1.03274 1.39753 1.21967 0.93196 0.95374 0.96310 1.21431 0.98097 0.96020 0.98584 1.21705 0.96051 0.95929 0.98197 0.91516 1.21883 0.99160 0.96166 0.97947 1.22508 0.98635 0.95659 0.99131 1.22170 0.97332 0.97190 0.98964 1.21898 0.95881 0.94805 0.98380 0.90113 1.21923 0.98360 0.90795 0.94984 1.21502 0.96676 0.97514 0.97577 1.21494 0.98688 0.99395 0.94931 0.93188 0.95884 0.94906 0.93892 0.94551 0.91275 0.91612 0.91539 0.95012 0.92071 0.91359 0.91945 0.92284 0.92052 0.92229 0.91629 0.91576 0.89701 0.94504 0.90780 0.94313 0.96810 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.88 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.50 -13.15 6.61 -34.44 -0.23 -13.38 16 8 H 0.05 1.38 6.71 -52.49 -0.35 1.03 16 9 C 0.04 1.06 2.59 -91.78 -0.24 0.82 16 10 C -0.10 -2.15 5.41 -26.73 -0.14 -2.30 16 11 C -0.14 -2.59 4.32 -26.73 -0.12 -2.71 16 12 C 0.10 1.77 2.38 -67.71 -0.16 1.61 16 13 N -0.54 -8.90 4.58 -226.72 -1.04 -9.94 16 14 C 0.06 0.85 4.92 -3.69 -0.02 0.83 16 15 C -0.10 -1.23 5.82 -26.99 -0.16 -1.39 16 16 C -0.10 -1.22 2.26 -90.36 -0.20 -1.42 16 17 H 0.07 0.89 8.00 -51.93 -0.42 0.47 16 18 C -0.11 -1.18 6.51 -26.01 -0.17 -1.35 16 19 C -0.12 -1.25 6.88 -24.41 -0.17 -1.42 16 20 C -0.12 -1.44 6.48 -25.39 -0.16 -1.61 16 21 C -0.09 -1.22 2.48 -89.94 -0.22 -1.45 16 22 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 23 C 0.07 1.09 4.35 -4.06 -0.02 1.07 16 24 C -0.10 -1.99 4.37 -26.76 -0.12 -2.11 16 25 C -0.11 -2.49 5.23 -26.76 -0.14 -2.63 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.63 6.37 -51.93 -0.33 0.30 16 31 H 0.07 1.46 5.36 -51.93 -0.28 1.18 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.03 0.48 6.25 -51.93 -0.32 0.15 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 37 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 1.53 5.96 -51.93 -0.31 1.22 16 44 H 0.04 0.65 6.85 -51.93 -0.36 0.30 16 45 H 0.07 1.70 5.29 -51.93 -0.27 1.42 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -26.53 337.99 -11.55 -38.08 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.85 Total: 0.96 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -2.36 Total: -25.83 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: -0.41 Total: -34.35 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.53 -11.55 -38.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335176.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.150 kcal (2) G-P(sol) polarization free energy of solvation -26.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds