Wall clock time and date at job start Mon Mar 30 2020 02:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00089 * 2 1 4 4 H 1.48504 * 109.46575 * 269.99501 * 3 2 1 5 5 H 1.48495 * 109.47178 * 29.99243 * 3 2 1 6 6 H 1.48501 * 109.47337 * 149.99748 * 3 2 1 7 7 C 1.37875 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00378 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47355 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47198 * 300.00257 * 10 9 7 12 12 C 1.53005 * 109.46683 * 299.99868 * 11 10 9 13 13 N 1.46909 * 109.46780 * 180.02562 * 12 11 10 14 14 C 1.46331 * 110.99945 * 56.04177 * 13 12 11 15 15 C 1.53856 * 111.78838 * 178.37825 * 14 13 12 16 16 C 1.51615 * 106.96023 * 56.26830 * 15 14 13 17 17 H 1.09003 * 109.76425 * 56.45221 * 16 15 14 18 18 C 1.52368 * 117.08945 * 182.47446 * 16 15 14 19 19 C 1.54987 * 105.22775 * 146.77527 * 18 16 15 20 20 C 1.55400 * 106.35581 * 356.23438 * 19 18 16 21 21 C 1.53125 * 102.83011 * 335.98625 * 20 19 18 22 22 H 1.08996 * 110.34514 * 284.05055 * 21 20 19 23 23 C 1.47691 * 110.99785 * 288.59647 * 13 12 11 24 24 C 1.52998 * 109.47196 * 60.00130 * 12 11 10 25 25 C 1.52997 * 109.47182 * 59.99890 * 9 7 2 26 26 H 0.97003 * 119.99425 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47235 * 300.00015 * 9 7 2 28 28 H 1.09004 * 109.47550 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.46967 * 60.00278 * 10 9 7 30 30 H 1.08998 * 109.47264 * 180.02562 * 11 10 9 31 31 H 1.08994 * 109.47271 * 59.99524 * 11 10 9 32 32 H 1.08991 * 109.47233 * 299.99372 * 12 11 10 33 33 H 1.09002 * 109.01482 * 57.79142 * 14 13 12 34 34 H 1.08996 * 109.02036 * 298.97263 * 14 13 12 35 35 H 1.09006 * 109.95812 * 175.63045 * 15 14 13 36 36 H 1.09002 * 109.96072 * 296.90733 * 15 14 13 37 37 H 1.08995 * 110.29351 * 27.83302 * 18 16 15 38 38 H 1.08998 * 110.36982 * 265.74669 * 18 16 15 39 39 H 1.09007 * 110.07753 * 237.01816 * 19 18 16 40 40 H 1.08994 * 110.08428 * 115.46133 * 19 18 16 41 41 H 1.08995 * 110.74631 * 217.64394 * 20 19 18 42 42 H 1.08998 * 110.89226 * 94.39058 * 20 19 18 43 43 H 1.09000 * 109.93575 * 304.41344 * 23 13 12 44 44 H 1.09003 * 109.93490 * 65.64347 * 23 13 12 45 45 H 1.08996 * 109.46962 * 59.99651 * 24 12 11 46 46 H 1.09000 * 109.46967 * 179.97438 * 24 12 11 47 47 H 1.09005 * 109.47522 * 180.02562 * 25 9 7 48 48 H 1.09000 * 109.47437 * 299.99949 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5468 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 3.1249 -3.5810 -1.2487 12 6 2.2452 -3.6620 -2.4979 13 7 3.0899 -3.5848 -3.6974 14 6 4.1154 -4.6286 -3.6847 15 6 4.9858 -4.5896 -4.9528 16 6 5.5737 -3.1950 -5.0430 17 1 6.1246 -2.9675 -4.1304 18 6 6.4376 -2.8835 -6.2587 19 6 6.1862 -1.3849 -6.5637 20 6 5.1008 -0.9098 -5.5580 21 6 4.3801 -2.2113 -5.1956 22 1 3.7201 -2.5177 -6.0071 23 6 3.6323 -2.2228 -3.8760 24 6 1.2511 -2.4991 -2.4979 25 6 0.3719 -2.5804 -1.2490 26 1 -0.4849 0.8401 -0.0004 27 1 0.6240 -2.5566 0.8903 28 1 1.7003 -4.6061 0.0010 29 1 2.8719 -3.6043 0.8906 30 1 3.8329 -4.4098 -1.2489 31 1 3.6699 -2.6371 -1.2487 32 1 1.7003 -4.6059 -2.4980 33 1 3.6302 -5.6024 -3.6168 34 1 4.7531 -4.4895 -2.8118 35 1 5.7857 -5.3264 -4.8779 36 1 4.3730 -4.7925 -5.8311 37 1 6.1335 -3.4979 -7.1061 38 1 7.4900 -3.0511 -6.0293 39 1 5.8267 -1.2662 -7.5859 40 1 7.1040 -0.8147 -6.4207 41 1 4.4151 -0.2082 -6.0329 42 1 5.5579 -0.4629 -4.6752 43 1 2.8178 -1.4991 -3.9040 44 1 4.3147 -1.9846 -3.0600 45 1 1.7961 -1.5552 -2.4979 46 1 0.6247 -2.5566 -3.3881 47 1 -0.1735 -3.5242 -1.2488 48 1 -0.3364 -1.7520 -1.2495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173335176.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:45 Heat of formation + Delta-G solvation = -39.206074 kcal Electronic energy + Delta-G solvation = -23583.493222 eV Core-core repulsion = 20635.840966 eV Total energy + Delta-G solvation = -2947.652255 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.29713 -39.39425 -36.66181 -34.24971 -33.00541 -31.39020 -31.27588 -29.14244 -28.19317 -26.58843 -24.59074 -23.71888 -22.49394 -21.49432 -21.13775 -20.68333 -20.01908 -17.75295 -16.97815 -16.62978 -16.10787 -15.91237 -15.71010 -15.35059 -15.06777 -14.93221 -14.63146 -14.33309 -14.03910 -13.80671 -13.35799 -13.22469 -13.05131 -12.89773 -12.84924 -12.63879 -12.42092 -12.22937 -12.00145 -11.98999 -11.80521 -11.66394 -11.53822 -11.38808 -11.29759 -11.20730 -11.04247 -10.76789 -10.59213 -10.52801 -10.28415 -8.98081 -8.03896 -6.13488 1.36750 1.39085 1.46842 2.43402 2.97581 3.24116 3.53949 3.77076 3.83737 4.02913 4.13191 4.24305 4.26271 4.35968 4.42470 4.51345 4.55060 4.66637 4.70828 4.71197 4.76733 4.80970 4.82939 4.87687 4.94412 4.96021 4.97118 5.03487 5.05391 5.06159 5.13429 5.18724 5.22185 5.26795 5.31872 5.33463 5.42401 5.48809 5.55685 5.63466 5.65404 5.72088 5.74852 5.93424 6.21351 6.28781 6.43034 6.46660 6.95560 7.51864 9.00844 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.006115 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.925017 B = 4577.887036 C = 5574.688085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.502 4.502 8 H 0.046 0.954 9 C 0.038 3.962 10 C -0.098 4.098 11 C -0.125 4.125 12 C 0.104 3.896 13 N -0.543 5.543 14 C 0.056 3.944 15 C -0.096 4.096 16 C -0.096 4.096 17 H 0.053 0.947 18 C -0.109 4.109 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.089 4.089 22 H 0.080 0.920 23 C 0.071 3.929 24 C -0.084 4.084 25 C -0.101 4.101 26 H 0.257 0.743 27 H -0.011 1.011 28 H 0.051 0.949 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.025 0.975 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.017 0.983 45 H 0.049 0.951 46 H 0.043 0.957 47 H 0.027 0.973 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.445 -7.619 -12.950 18.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.181 4.181 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.020 3.980 10 C -0.136 4.136 11 C -0.164 4.164 12 C -0.004 4.004 13 N -0.267 5.267 14 C -0.072 4.072 15 C -0.134 4.134 16 C -0.115 4.115 17 H 0.071 0.929 18 C -0.146 4.146 19 C -0.155 4.155 20 C -0.160 4.160 21 C -0.108 4.108 22 H 0.098 0.902 23 C -0.057 4.057 24 C -0.122 4.122 25 C -0.140 4.140 26 H 0.066 0.934 27 H 0.007 0.993 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.036 0.964 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.046 0.954 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.032 -7.601 -13.345 18.910 hybrid contribution 0.393 1.486 1.362 2.054 sum 11.425 -6.115 -11.983 17.650 Atomic orbital electron populations 1.70004 1.06918 1.26592 1.52176 1.25559 0.95417 1.01559 0.95565 0.85914 0.78937 0.80871 0.78166 1.20253 1.21162 1.19691 1.21302 0.92299 0.91543 1.48842 0.93580 1.18689 0.93138 0.92997 0.93187 1.21406 0.97642 0.97810 0.96757 1.21931 0.98240 1.00325 0.95872 1.21505 0.93324 0.98614 0.86953 1.61503 1.23222 1.03791 1.38144 1.22105 0.92830 0.94797 0.97452 1.21405 0.98267 0.96338 0.97369 1.21688 0.95451 0.95644 0.98681 0.92851 1.21864 0.99415 0.96092 0.97243 1.22493 0.98182 0.95829 0.98951 1.22197 0.97944 0.96629 0.99223 1.21847 0.96246 0.96306 0.96382 0.90207 1.21829 0.97316 0.90368 0.96161 1.21321 0.96747 0.97680 0.96447 1.21345 0.98358 0.98678 0.95601 0.93358 0.99309 0.92994 0.94112 0.92081 0.93627 0.90578 0.90428 0.95711 0.89823 0.90872 0.90756 0.91098 0.90917 0.91334 0.91668 0.92715 0.92191 0.96431 0.93244 0.93782 0.95409 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.21 11.32 21.45 0.24 -52.97 16 2 C 0.02 0.94 5.30 84.65 0.45 1.39 16 3 Si 0.93 44.09 29.54 68.60 2.03 46.12 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.50 -27.20 6.61 25.60 0.17 -27.03 16 8 H 0.05 2.51 6.71 -2.91 -0.02 2.49 16 9 C 0.04 1.92 2.59 -11.54 -0.03 1.89 16 10 C -0.10 -4.06 5.41 30.59 0.17 -3.89 16 11 C -0.12 -4.67 4.32 30.60 0.13 -4.54 16 12 C 0.10 3.74 2.38 44.91 0.11 3.84 16 13 N -0.54 -17.08 4.58 -871.20 -3.99 -21.07 16 14 C 0.06 1.44 4.92 86.70 0.43 1.86 16 15 C -0.10 -1.98 5.82 30.43 0.18 -1.80 16 16 C -0.10 -2.10 2.26 -10.63 -0.02 -2.13 16 17 H 0.05 1.32 8.00 -2.39 -0.02 1.30 16 18 C -0.11 -1.88 6.51 31.06 0.20 -1.68 16 19 C -0.12 -2.10 6.88 32.10 0.22 -1.88 16 20 C -0.12 -2.84 6.48 31.46 0.20 -2.63 16 21 C -0.09 -2.30 2.48 -10.35 -0.03 -2.32 16 22 H 0.08 2.10 8.11 -2.39 -0.02 2.08 16 23 C 0.07 2.32 4.35 85.72 0.37 2.69 16 24 C -0.08 -3.57 4.37 30.58 0.13 -3.43 16 25 C -0.10 -4.83 5.23 30.58 0.16 -4.67 16 26 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 27 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 28 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 2.00 6.37 -2.39 -0.02 1.98 16 31 H 0.05 1.93 5.36 -2.39 -0.01 1.92 16 32 H 0.08 2.62 8.14 -2.39 -0.02 2.61 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.02 0.68 6.25 -2.39 -0.01 0.67 16 35 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.07 1.48 8.12 -2.39 -0.02 1.46 16 37 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 2.23 5.96 -2.39 -0.01 2.22 16 44 H 0.02 0.63 6.85 -2.39 -0.02 0.62 16 45 H 0.05 2.34 5.29 -2.39 -0.01 2.33 16 46 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 48 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 Total: -1.00 -58.08 337.99 2.02 -56.06 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.90 Total: 16.18 kcal Atomic # 6 Polarization: -47.16 SS G_CDS: 2.84 Total: -44.32 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -3.75 Total: -74.04 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -58.08 2.02 -56.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335176.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.857 kcal (2) G-P(sol) polarization free energy of solvation -58.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds