Wall clock time and date at job start Mon Mar 30 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.46842 * 299.71996 * 9 7 2 11 11 C 1.53000 * 109.47253 * 300.00059 * 10 9 7 12 12 C 1.52996 * 109.47166 * 300.00041 * 11 10 9 13 13 N 1.46899 * 109.47336 * 180.02562 * 12 11 10 14 14 C 1.47157 * 110.99611 * 306.04455 * 13 12 11 15 15 C 1.52903 * 108.28421 * 171.23409 * 14 13 12 16 16 C 1.51301 * 111.08611 * 58.47601 * 15 14 13 17 17 H 1.08998 * 109.61764 * 187.59472 * 16 15 14 18 18 C 1.54075 * 112.10852 * 65.64221 * 16 15 14 19 19 C 1.54101 * 103.80107 * 198.69475 * 18 16 15 20 20 C 1.53979 * 106.34654 * 23.89914 * 19 18 16 21 21 C 1.54059 * 112.76049 * 310.00142 * 16 15 14 22 22 H 1.08999 * 111.69134 * 281.42648 * 21 16 15 23 23 C 1.46481 * 110.99981 * 183.13339 * 13 12 11 24 24 C 1.53010 * 109.47146 * 59.99909 * 12 11 10 25 25 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 26 26 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09001 * 109.47094 * 60.00208 * 10 9 7 29 29 H 1.09003 * 109.46851 * 180.02562 * 10 9 7 30 30 H 1.09004 * 109.47131 * 180.02562 * 11 10 9 31 31 H 1.09003 * 109.47049 * 60.00296 * 11 10 9 32 32 H 1.09003 * 109.47345 * 300.00074 * 12 11 10 33 33 H 1.09001 * 109.70410 * 290.93576 * 14 13 12 34 34 H 1.09001 * 109.70169 * 51.50061 * 14 13 12 35 35 H 1.09002 * 109.15499 * 178.88889 * 15 14 13 36 36 H 1.08993 * 109.15380 * 298.06684 * 15 14 13 37 37 H 1.09000 * 110.59914 * 317.64585 * 18 16 15 38 38 H 1.08996 * 110.60499 * 80.60469 * 18 16 15 39 39 H 1.09004 * 110.55074 * 264.47909 * 19 18 16 40 40 H 1.08996 * 109.79611 * 142.91983 * 19 18 16 41 41 H 1.08997 * 110.08288 * 241.78143 * 20 19 18 42 42 H 1.09005 * 110.07864 * 120.22786 * 20 19 18 43 43 H 1.08996 * 109.19071 * 307.51229 * 23 13 12 44 44 H 1.08995 * 109.19563 * 66.77957 * 23 13 12 45 45 H 1.09001 * 109.47172 * 179.97438 * 24 12 11 46 46 H 1.09003 * 109.46863 * 59.99870 * 24 12 11 47 47 H 1.08994 * 109.47089 * 179.97438 * 25 9 7 48 48 H 1.09004 * 109.47066 * 299.99797 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0267 -0.4754 -1.2428 11 6 3.5219 -1.1992 -2.4927 12 6 4.0319 -2.6416 -2.4877 13 7 3.5477 -3.3364 -3.6880 14 6 2.0844 -3.2322 -3.8034 15 6 1.6709 -3.7776 -5.1707 16 6 2.1151 -5.2140 -5.3407 17 1 1.9300 -5.5353 -6.3656 18 6 1.3954 -6.1631 -4.3634 19 6 2.2895 -7.4181 -4.3443 20 6 3.6969 -6.9539 -4.7623 21 6 3.6015 -5.4232 -4.9936 22 1 4.2541 -5.0949 -5.8025 23 6 3.9554 -4.7433 -3.6806 24 6 3.5167 -3.3604 -1.2390 25 6 4.0215 -2.6366 0.0108 26 1 -0.4849 0.8400 0.0004 27 1 3.8711 -0.6785 0.8962 28 1 3.6634 0.5523 -1.2463 29 1 5.1167 -0.4758 -1.2384 30 1 3.8893 -0.6874 -3.3822 31 1 2.4319 -1.1991 -2.4972 32 1 5.1219 -2.6417 -2.4831 33 1 1.6110 -3.8181 -3.0155 34 1 1.7824 -2.1884 -3.7169 35 1 0.5861 -3.7254 -5.2634 36 1 2.1256 -3.1679 -5.9513 37 1 1.3324 -5.7162 -3.3712 38 1 0.4025 -6.4157 -4.7353 39 1 1.9179 -8.1634 -5.0475 40 1 2.3175 -7.8360 -3.3380 41 1 3.9976 -7.4534 -5.6832 42 1 4.4128 -7.1685 -3.9687 43 1 5.0319 -4.8035 -3.5209 44 1 3.4441 -5.2603 -2.8686 45 1 3.8796 -4.3882 -1.2357 46 1 2.4267 -3.3604 -1.2436 47 1 5.1115 -2.6366 0.0149 48 1 3.6545 -3.1486 0.9003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173335179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:48 Heat of formation + Delta-G solvation = -20.753216 kcal Electronic energy + Delta-G solvation = -23758.766050 eV Core-core repulsion = 20811.913970 eV Total energy + Delta-G solvation = -2946.852080 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.30857 -38.12397 -35.14819 -32.48940 -31.82480 -30.26325 -29.85491 -28.01182 -27.06740 -24.67278 -23.35380 -22.80891 -21.70091 -20.51542 -19.81935 -18.71779 -17.76876 -16.32398 -16.08756 -15.46254 -14.90444 -14.78155 -14.34122 -14.06157 -13.74610 -13.62941 -13.26400 -12.94899 -12.60015 -12.33699 -12.15348 -11.93568 -11.74838 -11.46781 -11.42475 -11.34870 -11.07971 -10.90357 -10.74183 -10.59992 -10.32975 -10.24112 -10.18854 -10.11072 -9.89152 -9.73020 -9.65901 -9.37156 -8.93858 -8.76320 -8.47155 -7.71224 -6.02855 -3.99518 3.30252 3.41082 3.42683 4.26658 4.45375 4.58076 4.69049 4.81113 5.21309 5.28622 5.30491 5.41307 5.46323 5.51892 5.57046 5.60996 5.65911 5.70486 5.77749 5.83011 5.88945 5.90688 5.98641 6.03034 6.12738 6.14794 6.16819 6.25440 6.28429 6.34950 6.35383 6.42499 6.43348 6.45038 6.49960 6.56108 6.62783 6.74902 6.78124 7.04766 7.13575 7.23087 7.32253 7.45370 7.61927 7.67376 7.85991 8.58161 9.00802 9.61047 11.10216 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.026680 B = 0.005301 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.208847 B = 5280.329626 C = 5521.375782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.884 3.116 4 H -0.279 1.279 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.499 4.499 8 H 0.073 0.927 9 C 0.006 3.994 10 C -0.115 4.115 11 C -0.100 4.100 12 C 0.094 3.906 13 N -0.528 5.528 14 C 0.047 3.953 15 C -0.107 4.107 16 C -0.082 4.082 17 H 0.066 0.934 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.080 4.080 22 H 0.078 0.922 23 C 0.060 3.940 24 C -0.139 4.139 25 C -0.092 4.092 26 H 0.262 0.738 27 H 0.024 0.976 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.039 0.961 46 H 0.076 0.924 47 H 0.035 0.965 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.657 -11.129 -10.086 16.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.228 1.228 6 H -0.193 1.193 7 C -0.537 4.537 8 H 0.091 0.909 9 C -0.012 4.012 10 C -0.153 4.153 11 C -0.138 4.138 12 C -0.014 4.014 13 N -0.251 5.251 14 C -0.080 4.080 15 C -0.145 4.145 16 C -0.101 4.101 17 H 0.084 0.916 18 C -0.162 4.162 19 C -0.161 4.161 20 C -0.160 4.160 21 C -0.099 4.099 22 H 0.096 0.904 23 C -0.068 4.068 24 C -0.178 4.178 25 C -0.130 4.130 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.095 0.905 47 H 0.053 0.947 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.715 -10.801 -10.509 16.498 hybrid contribution 0.030 0.552 0.732 0.917 sum 6.745 -10.249 -9.777 15.688 Atomic orbital electron populations 1.69900 1.06207 1.26710 1.51448 1.24989 0.94594 0.98826 0.94773 0.86901 0.79865 0.83939 0.77839 1.20625 1.22817 1.19286 1.20978 0.88689 0.94079 1.49946 0.90936 1.19210 0.97118 0.91905 0.93003 1.21812 0.97408 0.98703 0.97393 1.21494 1.02802 0.93028 0.96465 1.21658 0.98332 0.94468 0.86971 1.62513 1.11793 1.12047 1.38731 1.22261 0.87896 1.02078 0.95804 1.21106 1.00127 0.95036 0.98193 1.21389 0.94687 0.95236 0.98796 0.91603 1.22313 0.98178 0.95313 1.00356 1.22089 0.95348 0.97695 1.00988 1.22414 0.97075 0.95670 1.00888 1.21781 0.96491 0.93910 0.97713 0.90358 1.21860 0.99785 0.88990 0.96147 1.22091 1.02671 0.97046 0.95946 1.21289 0.97350 0.97767 0.96609 0.92866 0.95766 0.93717 0.94685 0.93622 0.89734 0.91446 0.94143 0.89513 0.91997 0.91589 0.91126 0.92058 0.92188 0.92215 0.92126 0.91907 0.91771 0.94497 0.94210 0.90497 0.94654 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 2 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 3 Si 0.88 21.96 24.37 -169.99 -4.14 17.82 16 4 H -0.28 -6.79 6.87 56.52 0.39 -6.41 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.27 -6.43 6.52 56.52 0.37 -6.06 16 7 C -0.50 -13.39 7.19 -34.44 -0.25 -13.64 16 8 H 0.07 2.12 6.96 -52.49 -0.37 1.75 16 9 C 0.01 0.15 2.18 -91.77 -0.20 -0.05 16 10 C -0.12 -2.46 4.94 -26.73 -0.13 -2.60 16 11 C -0.10 -2.00 4.58 -26.73 -0.12 -2.12 16 12 C 0.09 1.64 2.33 -67.71 -0.16 1.48 16 13 N -0.53 -8.38 4.74 -227.45 -1.08 -9.45 16 14 C 0.05 0.77 4.50 -3.73 -0.02 0.75 16 15 C -0.11 -1.44 5.56 -27.64 -0.15 -1.59 16 16 C -0.08 -0.98 2.88 -90.36 -0.26 -1.24 16 17 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 18 C -0.12 -1.46 5.69 -25.59 -0.15 -1.60 16 19 C -0.12 -1.28 6.74 -25.65 -0.17 -1.45 16 20 C -0.12 -1.25 6.15 -25.11 -0.15 -1.41 16 21 C -0.08 -0.95 3.49 -89.44 -0.31 -1.26 16 22 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 23 C 0.06 0.83 3.51 -4.54 -0.02 0.82 16 24 C -0.14 -2.56 4.24 -26.73 -0.11 -2.68 16 25 C -0.09 -1.82 5.41 -26.73 -0.14 -1.96 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.02 0.58 7.19 -51.93 -0.37 0.21 16 28 H 0.04 1.02 3.29 -51.93 -0.17 0.85 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.90 5.22 -51.93 -0.27 1.63 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.71 5.44 -51.93 -0.28 0.43 16 34 H 0.09 1.58 5.75 -51.93 -0.30 1.29 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.96 6.02 -51.93 -0.31 0.64 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.63 7.77 -51.93 -0.40 0.23 16 43 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 44 H 0.04 0.54 5.51 -51.93 -0.29 0.26 16 45 H 0.04 0.67 6.51 -51.93 -0.34 0.33 16 46 H 0.08 1.62 5.24 -51.93 -0.27 1.35 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 325.57 15.07 4.91 4.91 Total: -1.00 -27.90 325.57 -10.46 -38.36 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.47 Total: 1.45 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -2.45 Total: -26.70 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.30 Total: -35.82 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.82 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.90 -10.46 -38.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.605 kcal (2) G-P(sol) polarization free energy of solvation -27.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds