Wall clock time and date at job start Mon Mar 30 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.46842 * 299.71996 * 9 7 2 11 11 C 1.53000 * 109.47253 * 300.00059 * 10 9 7 12 12 C 1.52996 * 109.47166 * 300.00041 * 11 10 9 13 13 N 1.46899 * 109.47336 * 180.02562 * 12 11 10 14 14 C 1.47157 * 110.99611 * 306.04455 * 13 12 11 15 15 C 1.52903 * 108.28421 * 171.23409 * 14 13 12 16 16 C 1.51301 * 111.08611 * 58.47601 * 15 14 13 17 17 H 1.08998 * 109.61764 * 187.59472 * 16 15 14 18 18 C 1.54075 * 112.10852 * 65.64221 * 16 15 14 19 19 C 1.54101 * 103.80107 * 198.69475 * 18 16 15 20 20 C 1.53979 * 106.34654 * 23.89914 * 19 18 16 21 21 C 1.54059 * 112.76049 * 310.00142 * 16 15 14 22 22 H 1.08999 * 111.69134 * 281.42648 * 21 16 15 23 23 C 1.46481 * 110.99981 * 183.13339 * 13 12 11 24 24 C 1.53010 * 109.47146 * 59.99909 * 12 11 10 25 25 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 26 26 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09001 * 109.47094 * 60.00208 * 10 9 7 29 29 H 1.09003 * 109.46851 * 180.02562 * 10 9 7 30 30 H 1.09004 * 109.47131 * 180.02562 * 11 10 9 31 31 H 1.09003 * 109.47049 * 60.00296 * 11 10 9 32 32 H 1.09003 * 109.47345 * 300.00074 * 12 11 10 33 33 H 1.09001 * 109.70410 * 290.93576 * 14 13 12 34 34 H 1.09001 * 109.70169 * 51.50061 * 14 13 12 35 35 H 1.09002 * 109.15499 * 178.88889 * 15 14 13 36 36 H 1.08993 * 109.15380 * 298.06684 * 15 14 13 37 37 H 1.09000 * 110.59914 * 317.64585 * 18 16 15 38 38 H 1.08996 * 110.60499 * 80.60469 * 18 16 15 39 39 H 1.09004 * 110.55074 * 264.47909 * 19 18 16 40 40 H 1.08996 * 109.79611 * 142.91983 * 19 18 16 41 41 H 1.08997 * 110.08288 * 241.78143 * 20 19 18 42 42 H 1.09005 * 110.07864 * 120.22786 * 20 19 18 43 43 H 1.08996 * 109.19071 * 307.51229 * 23 13 12 44 44 H 1.08995 * 109.19563 * 66.77957 * 23 13 12 45 45 H 1.09001 * 109.47172 * 179.97438 * 24 12 11 46 46 H 1.09003 * 109.46863 * 59.99870 * 24 12 11 47 47 H 1.08994 * 109.47089 * 179.97438 * 25 9 7 48 48 H 1.09004 * 109.47066 * 299.99797 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0267 -0.4754 -1.2428 11 6 3.5219 -1.1992 -2.4927 12 6 4.0319 -2.6416 -2.4877 13 7 3.5477 -3.3364 -3.6880 14 6 2.0844 -3.2322 -3.8034 15 6 1.6709 -3.7776 -5.1707 16 6 2.1151 -5.2140 -5.3407 17 1 1.9300 -5.5353 -6.3656 18 6 1.3954 -6.1631 -4.3634 19 6 2.2895 -7.4181 -4.3443 20 6 3.6969 -6.9539 -4.7623 21 6 3.6015 -5.4232 -4.9936 22 1 4.2541 -5.0949 -5.8025 23 6 3.9554 -4.7433 -3.6806 24 6 3.5167 -3.3604 -1.2390 25 6 4.0215 -2.6366 0.0108 26 1 -0.4849 0.8400 0.0004 27 1 3.8711 -0.6785 0.8962 28 1 3.6634 0.5523 -1.2463 29 1 5.1167 -0.4758 -1.2384 30 1 3.8893 -0.6874 -3.3822 31 1 2.4319 -1.1991 -2.4972 32 1 5.1219 -2.6417 -2.4831 33 1 1.6110 -3.8181 -3.0155 34 1 1.7824 -2.1884 -3.7169 35 1 0.5861 -3.7254 -5.2634 36 1 2.1256 -3.1679 -5.9513 37 1 1.3324 -5.7162 -3.3712 38 1 0.4025 -6.4157 -4.7353 39 1 1.9179 -8.1634 -5.0475 40 1 2.3175 -7.8360 -3.3380 41 1 3.9976 -7.4534 -5.6832 42 1 4.4128 -7.1685 -3.9687 43 1 5.0319 -4.8035 -3.5209 44 1 3.4441 -5.2603 -2.8686 45 1 3.8796 -4.3882 -1.2357 46 1 2.4267 -3.3604 -1.2436 47 1 5.1115 -2.6366 0.0149 48 1 3.6545 -3.1486 0.9003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173335179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:48 Heat of formation + Delta-G solvation = -36.375448 kcal Electronic energy + Delta-G solvation = -23759.443480 eV Core-core repulsion = 20811.913970 eV Total energy + Delta-G solvation = -2947.529510 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48743 -39.53381 -36.54648 -34.26778 -33.23842 -31.72721 -31.28121 -29.39333 -28.10262 -26.54200 -24.72627 -24.03346 -23.19653 -21.82584 -20.97245 -20.33865 -18.99394 -18.11469 -17.40940 -16.81913 -16.44053 -15.91913 -15.82624 -15.53671 -15.25701 -14.93994 -14.58700 -14.47853 -14.11356 -13.83487 -13.69143 -13.21916 -13.06697 -13.05381 -12.79678 -12.61508 -12.56810 -12.12965 -11.96522 -11.90834 -11.77386 -11.66952 -11.57712 -11.38851 -11.25295 -11.14724 -10.99944 -10.94946 -10.70264 -10.68282 -10.50128 -9.05358 -8.23351 -6.22617 1.31103 1.35747 1.45341 2.35889 3.02725 3.14013 3.64504 3.73269 3.84498 3.94159 4.03462 4.22571 4.24396 4.30463 4.39804 4.48705 4.52631 4.57336 4.62581 4.68320 4.70956 4.73235 4.75478 4.80551 4.83177 4.84882 4.89114 4.89853 5.02109 5.03895 5.09959 5.13213 5.16490 5.22142 5.28785 5.35301 5.39001 5.43020 5.51682 5.52973 5.56293 5.58707 5.59627 5.72189 5.84563 6.24462 6.34759 6.40171 6.82032 7.40622 8.93425 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.026680 B = 0.005301 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.208847 B = 5280.329626 C = 5521.375782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.012 3.988 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.306 1.306 6 H -0.248 1.248 7 C -0.487 4.487 8 H 0.032 0.968 9 C 0.002 3.998 10 C -0.115 4.115 11 C -0.096 4.096 12 C 0.100 3.900 13 N -0.524 5.524 14 C 0.053 3.947 15 C -0.102 4.102 16 C -0.081 4.081 17 H 0.085 0.915 18 C -0.126 4.126 19 C -0.121 4.121 20 C -0.116 4.116 21 C -0.078 4.078 22 H 0.087 0.913 23 C 0.060 3.940 24 C -0.129 4.129 25 C -0.090 4.090 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.030 0.970 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.017 0.983 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.025 0.975 45 H 0.060 0.940 46 H 0.038 0.962 47 H 0.068 0.932 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.703 -12.101 -11.677 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.184 4.184 3 Si 0.770 3.230 4 H -0.197 1.197 5 H -0.234 1.234 6 H -0.172 1.172 7 C -0.525 4.525 8 H 0.050 0.950 9 C -0.017 4.017 10 C -0.153 4.153 11 C -0.134 4.134 12 C -0.008 4.008 13 N -0.247 5.247 14 C -0.075 4.075 15 C -0.140 4.140 16 C -0.100 4.100 17 H 0.103 0.897 18 C -0.164 4.164 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.097 4.097 22 H 0.105 0.895 23 C -0.068 4.068 24 C -0.168 4.168 25 C -0.128 4.128 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.087 0.913 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.787 -11.791 -12.102 19.526 hybrid contribution -0.984 0.776 1.260 1.777 sum 8.803 -11.015 -10.842 17.786 Atomic orbital electron populations 1.70053 1.08073 1.27445 1.53948 1.25754 0.95201 1.02452 0.94967 0.85955 0.79191 0.79555 0.78336 1.19690 1.23419 1.17209 1.21182 0.91093 0.92277 1.47943 0.95014 1.19235 0.94155 0.94485 0.93837 1.21775 0.99395 0.97525 0.96623 1.21402 1.00560 0.94910 0.96524 1.21583 0.99201 0.92988 0.87072 1.62567 1.11032 1.13585 1.37474 1.22123 0.88410 1.00032 0.96965 1.21065 1.00285 0.96403 0.96206 1.21400 0.94978 0.93793 0.99789 0.89676 1.22290 0.99109 0.96094 0.98864 1.22088 0.95268 0.97131 1.01376 1.22384 0.96862 0.94234 1.01951 1.21790 0.96231 0.95007 0.96680 0.89476 1.21970 1.00263 0.87390 0.97175 1.21970 1.00241 0.98349 0.96236 1.21267 0.99242 0.95537 0.96784 0.93045 0.96191 0.95197 0.91268 0.92286 0.93399 0.89295 0.96447 0.92428 0.91936 0.91155 0.93888 0.91468 0.90520 0.92573 0.90205 0.91605 0.90514 0.95688 0.92151 0.94358 0.91297 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 2 C 0.01 0.71 5.45 84.66 0.46 1.17 16 3 Si 0.94 45.76 24.37 68.60 1.67 47.43 16 4 H -0.27 -12.67 6.87 99.48 0.68 -11.98 16 5 H -0.31 -15.03 7.11 99.48 0.71 -14.33 16 6 H -0.25 -11.17 6.52 99.48 0.65 -10.53 16 7 C -0.49 -27.14 7.19 25.60 0.18 -26.96 16 8 H 0.03 1.98 6.96 -2.91 -0.02 1.96 16 9 C 0.00 0.08 2.18 -11.54 -0.03 0.05 16 10 C -0.12 -4.71 4.94 30.59 0.15 -4.56 16 11 C -0.10 -3.77 4.58 30.59 0.14 -3.63 16 12 C 0.10 3.35 2.33 44.92 0.10 3.46 16 13 N -0.52 -16.09 4.74 -873.52 -4.14 -20.22 16 14 C 0.05 1.77 4.50 86.22 0.39 2.16 16 15 C -0.10 -2.71 5.56 30.01 0.17 -2.54 16 16 C -0.08 -1.79 2.88 -10.63 -0.03 -1.82 16 17 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 18 C -0.13 -2.85 5.69 31.33 0.18 -2.67 16 19 C -0.12 -2.23 6.74 31.30 0.21 -2.02 16 20 C -0.12 -2.00 6.15 31.65 0.19 -1.80 16 21 C -0.08 -1.64 3.49 -10.03 -0.04 -1.68 16 22 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 23 C 0.06 1.53 3.51 86.07 0.30 1.83 16 24 C -0.13 -4.73 4.24 30.60 0.13 -4.60 16 25 C -0.09 -3.45 5.41 30.59 0.17 -3.29 16 26 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 27 H 0.02 0.93 7.19 -2.39 -0.02 0.91 16 28 H 0.03 1.31 3.29 -2.39 -0.01 1.30 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.05 2.23 5.22 -2.39 -0.01 2.22 16 32 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.02 0.66 5.44 -2.39 -0.01 0.65 16 34 H 0.06 2.25 5.75 -2.39 -0.01 2.24 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 1.20 6.02 -2.39 -0.01 1.19 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.11 7.77 -2.38 -0.02 1.09 16 43 H 0.08 1.80 8.10 -2.39 -0.02 1.78 16 44 H 0.02 0.71 5.51 -2.39 -0.01 0.69 16 45 H 0.06 1.95 6.51 -2.39 -0.02 1.94 16 46 H 0.04 1.70 5.24 -2.39 -0.01 1.69 16 47 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 48 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -62.86 325.57 1.36 -61.50 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.84 Total: 17.97 kcal Atomic # 6 Polarization: -49.58 SS G_CDS: 2.69 Total: -46.89 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -3.84 Total: -80.01 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.67 Total: 47.43 kcal Total: -62.86 1.36 -61.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.127 kcal (2) G-P(sol) polarization free energy of solvation -62.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds