Wall clock time and date at job start Mon Mar 30 2020 02:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99512 * 2 1 4 4 H 1.48498 * 109.47120 * 270.00268 * 3 2 1 5 5 H 1.48495 * 109.46873 * 30.00287 * 3 2 1 6 6 H 1.48501 * 109.46807 * 150.00383 * 3 2 1 7 7 C 1.37874 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99935 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47084 * 299.99650 * 9 7 2 11 11 C 1.52999 * 109.47592 * 300.00286 * 10 9 7 12 12 C 1.53006 * 109.46626 * 300.00035 * 11 10 9 13 13 N 1.46051 * 109.46812 * 179.97438 * 12 11 10 14 14 C 1.46118 * 113.07052 * 47.61113 * 13 12 11 15 15 C 1.52171 * 111.30355 * 67.95903 * 14 13 12 16 16 C 1.52136 * 112.55164 * 52.92102 * 15 14 13 17 17 C 1.52141 * 112.56368 * 314.40549 * 16 15 14 18 18 C 1.46120 * 113.05614 * 174.99863 * 13 12 11 19 19 C 1.52572 * 109.79090 * 168.26357 * 18 13 12 20 20 C 1.52205 * 112.19878 * 54.04600 * 19 18 13 21 21 C 1.52210 * 112.68040 * 313.77635 * 20 19 18 22 22 C 1.52997 * 109.47164 * 59.99702 * 12 11 10 23 23 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 24 24 H 0.96997 * 120.00538 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99849 * 9 7 2 26 26 H 1.09000 * 109.47140 * 179.97438 * 10 9 7 27 27 H 1.09002 * 109.47045 * 60.00033 * 10 9 7 28 28 H 1.08993 * 109.47839 * 180.02562 * 11 10 9 29 29 H 1.09000 * 109.47160 * 59.99666 * 11 10 9 30 30 H 1.09000 * 109.47050 * 299.99699 * 12 11 10 31 31 H 1.10112 * 108.02319 * 309.22669 * 14 13 12 32 32 H 1.09471 * 109.82159 * 290.57998 * 15 14 13 33 33 H 1.09943 * 108.77267 * 173.68966 * 15 14 13 34 34 H 1.10585 * 108.04326 * 195.19523 * 16 15 14 35 35 H 1.08786 * 110.85588 * 79.21355 * 16 15 14 36 36 H 1.09473 * 109.55440 * 283.01205 * 17 16 15 37 37 H 1.09949 * 108.88436 * 166.21726 * 17 16 15 38 38 H 1.10119 * 108.02548 * 50.71106 * 18 13 12 39 39 H 1.09573 * 109.00471 * 175.29984 * 19 18 13 40 40 H 1.09563 * 108.99456 * 292.75908 * 19 18 13 41 41 H 1.10630 * 107.94695 * 194.68482 * 20 19 18 42 42 H 1.08727 * 110.88770 * 78.74634 * 20 19 18 43 43 H 1.09561 * 109.37234 * 285.04324 * 21 20 19 44 44 H 1.09587 * 109.32256 * 167.19984 * 21 20 19 45 45 H 1.09000 * 109.47140 * 60.00051 * 22 12 11 46 46 H 1.09001 * 109.47230 * 179.97438 * 22 12 11 47 47 H 1.08992 * 109.47534 * 300.00299 * 23 9 7 48 48 H 1.08996 * 109.47134 * 179.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0210 -0.4724 -1.2504 11 6 3.5106 -1.1934 -2.4996 12 6 4.0207 -2.6359 -2.5001 13 7 3.5330 -3.3243 -3.6922 14 6 3.7246 -2.5523 -4.9179 15 6 5.2007 -2.4209 -5.2634 16 6 5.9107 -3.7656 -5.3113 17 6 5.5621 -4.6523 -4.1251 18 6 4.0692 -4.6764 -3.8319 19 6 3.3037 -5.4261 -4.9181 20 6 3.2847 -4.6664 -6.2369 21 6 2.9435 -3.1935 -6.0608 22 6 3.5113 -3.3574 -1.2508 23 6 4.0217 -2.6363 -0.0010 24 1 -0.4851 0.8400 0.0004 25 1 3.8752 -0.6802 0.8888 26 1 5.1110 -0.4720 -1.2506 27 1 3.6576 0.5552 -1.2501 28 1 3.8739 -0.6797 -3.3896 29 1 2.4206 -1.1935 -2.4992 30 1 5.1107 -2.6358 -2.5005 31 1 3.3178 -1.5427 -4.7517 32 1 5.6960 -1.7707 -4.5352 33 1 5.2924 -1.9347 -6.2452 34 1 7.0004 -3.5785 -5.2904 35 1 5.7085 -4.2771 -6.2498 36 1 6.1086 -4.3116 -3.2399 37 1 5.8975 -5.6778 -4.3367 38 1 3.9130 -5.2051 -2.8787 39 1 3.7690 -6.4063 -5.0707 40 1 2.2750 -5.5920 -4.5795 41 1 2.5088 -5.1212 -6.8811 42 1 4.2268 -4.7855 -6.7665 43 1 1.8711 -3.0901 -5.8619 44 1 3.1656 -2.6563 -6.9898 45 1 2.4213 -3.3575 -1.2503 46 1 3.8743 -4.3852 -1.2513 47 1 3.6587 -3.1500 0.8891 48 1 5.1116 -2.6363 -0.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173336921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:16 Heat of formation + Delta-G solvation = -19.148299 kcal Electronic energy + Delta-G solvation = -24139.379671 eV Core-core repulsion = 21192.597186 eV Total energy + Delta-G solvation = -2946.782485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.61685 -37.52532 -33.47461 -32.75552 -32.71978 -31.72384 -29.83657 -28.55995 -26.02327 -25.02932 -23.88921 -22.70377 -21.29355 -20.64127 -20.32980 -18.61287 -17.43565 -16.57297 -15.90110 -15.31063 -14.89048 -14.55249 -14.15496 -13.81890 -13.44384 -13.39467 -13.28266 -13.23218 -13.13796 -12.49201 -12.36689 -12.01585 -11.86383 -11.57073 -11.35780 -11.20686 -10.98825 -10.88038 -10.83151 -10.80756 -10.42807 -10.24584 -10.07243 -9.88673 -9.85706 -9.61704 -9.56555 -9.20340 -8.87586 -8.71321 -8.41267 -7.61727 -5.97202 -3.93280 3.31888 3.42813 3.44562 4.19670 4.49058 4.68350 4.88974 4.92944 5.01830 5.16024 5.26672 5.28547 5.35096 5.35449 5.53525 5.56085 5.61791 5.75067 5.82129 5.86583 5.92294 5.95642 6.02595 6.05267 6.08629 6.13976 6.19351 6.22200 6.27912 6.30311 6.32353 6.37178 6.40512 6.45941 6.47415 6.56984 6.67839 6.74378 6.77927 7.16186 7.22521 7.32627 7.34705 7.55069 7.71385 7.82730 7.90691 8.64316 9.08294 9.66472 11.16084 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.024910 B = 0.005817 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.777191 B = 4812.316166 C = 4913.604186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.281 1.281 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.496 4.496 8 H 0.076 0.924 9 C 0.007 3.993 10 C -0.115 4.115 11 C -0.101 4.101 12 C 0.111 3.889 13 N -0.531 5.531 14 C 0.089 3.911 15 C -0.143 4.143 16 C -0.109 4.109 17 C -0.142 4.142 18 C 0.093 3.907 19 C -0.102 4.102 20 C -0.112 4.112 21 C -0.103 4.103 22 C -0.099 4.099 23 C -0.095 4.095 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.031 0.969 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.090 0.910 30 H 0.026 0.974 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.084 0.916 46 H 0.038 0.962 47 H 0.054 0.946 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.484 -8.342 -11.755 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.534 4.534 8 H 0.094 0.906 9 C -0.011 4.011 10 C -0.153 4.153 11 C -0.139 4.139 12 C 0.004 3.996 13 N -0.253 5.253 14 C -0.020 4.020 15 C -0.182 4.182 16 C -0.146 4.146 17 C -0.182 4.182 18 C -0.015 4.015 19 C -0.140 4.140 20 C -0.149 4.149 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.133 4.133 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.044 0.956 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.840 -8.278 -11.683 17.374 hybrid contribution 1.381 1.158 -0.197 1.813 sum 11.221 -7.121 -11.880 17.826 Atomic orbital electron populations 1.69899 1.06171 1.26584 1.51603 1.24982 0.94568 0.98701 0.94929 0.86928 0.79866 0.84170 0.77692 1.20790 1.22833 1.19371 1.21002 0.88611 0.94243 1.49560 0.90587 1.19204 0.97230 0.91917 0.92788 1.21823 0.97110 0.98765 0.97601 1.21540 1.03583 0.92808 0.95945 1.21234 0.95432 0.94268 0.88711 1.60268 1.61073 1.01908 1.02039 1.21291 0.92687 0.98244 0.89746 1.21821 0.97758 0.96929 1.01704 1.21213 0.99016 0.95932 0.98456 1.21804 0.98333 0.99647 0.98373 1.21217 0.90840 0.90613 0.98876 1.21330 1.00912 0.97283 0.94498 1.21285 1.01088 0.95656 0.96913 1.21339 1.00712 0.95063 0.97001 1.21503 1.03092 0.96027 0.93064 1.21355 0.97184 0.97860 0.96913 0.92931 0.95848 0.95008 0.93738 0.94330 0.89182 0.95614 0.89657 0.92312 0.92368 0.93748 0.91755 0.92366 0.92376 0.90328 0.92504 0.91541 0.93408 0.92284 0.91477 0.92475 0.89759 0.94378 0.92764 0.94926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 2 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 3 Si 0.88 22.14 24.37 -169.99 -4.14 18.00 16 4 H -0.28 -6.89 6.87 56.52 0.39 -6.50 16 5 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 7 C -0.50 -13.49 7.19 -34.44 -0.25 -13.74 16 8 H 0.08 2.25 6.95 -52.49 -0.37 1.88 16 9 C 0.01 0.17 2.18 -91.77 -0.20 -0.03 16 10 C -0.12 -2.48 4.94 -26.73 -0.13 -2.61 16 11 C -0.10 -2.02 4.33 -26.73 -0.12 -2.14 16 12 C 0.11 1.94 1.53 -68.17 -0.10 1.84 16 13 N -0.53 -8.33 4.10 -213.28 -0.88 -9.21 16 14 C 0.09 1.26 2.15 -68.78 -0.15 1.12 16 15 C -0.14 -1.81 4.99 -27.59 -0.14 -1.95 16 16 C -0.11 -1.25 5.13 -27.61 -0.14 -1.39 16 17 C -0.14 -1.72 4.95 -27.60 -0.14 -1.86 16 18 C 0.09 1.26 2.46 -68.78 -0.17 1.09 16 19 C -0.10 -1.21 5.50 -27.36 -0.15 -1.36 16 20 C -0.11 -1.25 5.12 -27.54 -0.14 -1.39 16 21 C -0.10 -1.28 5.50 -27.36 -0.15 -1.44 16 22 C -0.10 -1.86 4.89 -26.71 -0.13 -1.99 16 23 C -0.10 -1.89 5.42 -26.71 -0.14 -2.03 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 25 H 0.02 0.57 7.20 -51.93 -0.37 0.19 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.04 1.03 3.27 -51.93 -0.17 0.86 16 28 H 0.04 0.70 6.25 -51.93 -0.32 0.38 16 29 H 0.09 2.10 7.22 -51.93 -0.37 1.73 16 30 H 0.03 0.45 6.42 -51.93 -0.33 0.12 16 31 H 0.09 1.35 5.76 -51.30 -0.30 1.05 16 32 H 0.06 0.81 7.72 -51.66 -0.40 0.41 16 33 H 0.06 0.66 8.17 -51.39 -0.42 0.24 16 34 H 0.04 0.48 8.27 -51.02 -0.42 0.06 16 35 H 0.06 0.68 5.69 -52.05 -0.30 0.39 16 36 H 0.06 0.76 7.30 -51.66 -0.38 0.39 16 37 H 0.06 0.62 8.17 -51.39 -0.42 0.20 16 38 H 0.08 1.12 6.18 -51.29 -0.32 0.80 16 39 H 0.06 0.58 8.14 -51.60 -0.42 0.16 16 40 H 0.07 0.85 8.19 -51.61 -0.42 0.42 16 41 H 0.05 0.49 8.28 -50.99 -0.42 0.07 16 42 H 0.06 0.61 5.66 -52.08 -0.29 0.32 16 43 H 0.07 0.91 8.19 -51.61 -0.42 0.48 16 44 H 0.06 0.63 8.14 -51.60 -0.42 0.21 16 45 H 0.08 1.83 6.62 -51.93 -0.34 1.49 16 46 H 0.04 0.63 6.43 -51.93 -0.33 0.30 16 47 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 321.61 15.07 4.85 4.85 Total: -1.00 -28.50 321.61 -10.16 -38.66 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -8.42 Total: 0.49 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -2.35 Total: -26.02 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.10 Total: -35.97 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.50 -10.16 -38.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173336921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.511 kcal (2) G-P(sol) polarization free energy of solvation -28.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds