Wall clock time and date at job start Mon Mar 30 2020 02:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99512 * 2 1 4 4 H 1.48498 * 109.47120 * 270.00268 * 3 2 1 5 5 H 1.48495 * 109.46873 * 30.00287 * 3 2 1 6 6 H 1.48501 * 109.46807 * 150.00383 * 3 2 1 7 7 C 1.37874 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99935 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47084 * 299.99650 * 9 7 2 11 11 C 1.52999 * 109.47592 * 300.00286 * 10 9 7 12 12 C 1.53006 * 109.46626 * 300.00035 * 11 10 9 13 13 N 1.46051 * 109.46812 * 179.97438 * 12 11 10 14 14 C 1.46118 * 113.07052 * 47.61113 * 13 12 11 15 15 C 1.52171 * 111.30355 * 67.95903 * 14 13 12 16 16 C 1.52136 * 112.55164 * 52.92102 * 15 14 13 17 17 C 1.52141 * 112.56368 * 314.40549 * 16 15 14 18 18 C 1.46120 * 113.05614 * 174.99863 * 13 12 11 19 19 C 1.52572 * 109.79090 * 168.26357 * 18 13 12 20 20 C 1.52205 * 112.19878 * 54.04600 * 19 18 13 21 21 C 1.52210 * 112.68040 * 313.77635 * 20 19 18 22 22 C 1.52997 * 109.47164 * 59.99702 * 12 11 10 23 23 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 24 24 H 0.96997 * 120.00538 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99849 * 9 7 2 26 26 H 1.09000 * 109.47140 * 179.97438 * 10 9 7 27 27 H 1.09002 * 109.47045 * 60.00033 * 10 9 7 28 28 H 1.08993 * 109.47839 * 180.02562 * 11 10 9 29 29 H 1.09000 * 109.47160 * 59.99666 * 11 10 9 30 30 H 1.09000 * 109.47050 * 299.99699 * 12 11 10 31 31 H 1.10112 * 108.02319 * 309.22669 * 14 13 12 32 32 H 1.09471 * 109.82159 * 290.57998 * 15 14 13 33 33 H 1.09943 * 108.77267 * 173.68966 * 15 14 13 34 34 H 1.10585 * 108.04326 * 195.19523 * 16 15 14 35 35 H 1.08786 * 110.85588 * 79.21355 * 16 15 14 36 36 H 1.09473 * 109.55440 * 283.01205 * 17 16 15 37 37 H 1.09949 * 108.88436 * 166.21726 * 17 16 15 38 38 H 1.10119 * 108.02548 * 50.71106 * 18 13 12 39 39 H 1.09573 * 109.00471 * 175.29984 * 19 18 13 40 40 H 1.09563 * 108.99456 * 292.75908 * 19 18 13 41 41 H 1.10630 * 107.94695 * 194.68482 * 20 19 18 42 42 H 1.08727 * 110.88770 * 78.74634 * 20 19 18 43 43 H 1.09561 * 109.37234 * 285.04324 * 21 20 19 44 44 H 1.09587 * 109.32256 * 167.19984 * 21 20 19 45 45 H 1.09000 * 109.47140 * 60.00051 * 22 12 11 46 46 H 1.09001 * 109.47230 * 179.97438 * 22 12 11 47 47 H 1.08992 * 109.47534 * 300.00299 * 23 9 7 48 48 H 1.08996 * 109.47134 * 179.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0210 -0.4724 -1.2504 11 6 3.5106 -1.1934 -2.4996 12 6 4.0207 -2.6359 -2.5001 13 7 3.5330 -3.3243 -3.6922 14 6 3.7246 -2.5523 -4.9179 15 6 5.2007 -2.4209 -5.2634 16 6 5.9107 -3.7656 -5.3113 17 6 5.5621 -4.6523 -4.1251 18 6 4.0692 -4.6764 -3.8319 19 6 3.3037 -5.4261 -4.9181 20 6 3.2847 -4.6664 -6.2369 21 6 2.9435 -3.1935 -6.0608 22 6 3.5113 -3.3574 -1.2508 23 6 4.0217 -2.6363 -0.0010 24 1 -0.4851 0.8400 0.0004 25 1 3.8752 -0.6802 0.8888 26 1 5.1110 -0.4720 -1.2506 27 1 3.6576 0.5552 -1.2501 28 1 3.8739 -0.6797 -3.3896 29 1 2.4206 -1.1935 -2.4992 30 1 5.1107 -2.6358 -2.5005 31 1 3.3178 -1.5427 -4.7517 32 1 5.6960 -1.7707 -4.5352 33 1 5.2924 -1.9347 -6.2452 34 1 7.0004 -3.5785 -5.2904 35 1 5.7085 -4.2771 -6.2498 36 1 6.1086 -4.3116 -3.2399 37 1 5.8975 -5.6778 -4.3367 38 1 3.9130 -5.2051 -2.8787 39 1 3.7690 -6.4063 -5.0707 40 1 2.2750 -5.5920 -4.5795 41 1 2.5088 -5.1212 -6.8811 42 1 4.2268 -4.7855 -6.7665 43 1 1.8711 -3.0901 -5.8619 44 1 3.1656 -2.6563 -6.9898 45 1 2.4213 -3.3575 -1.2503 46 1 3.8743 -4.3852 -1.2513 47 1 3.6587 -3.1500 0.8891 48 1 5.1116 -2.6363 -0.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173336921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:16 Heat of formation + Delta-G solvation = -35.270837 kcal Electronic energy + Delta-G solvation = -24140.078797 eV Core-core repulsion = 21192.597186 eV Total energy + Delta-G solvation = -2947.481611 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.76244 -39.10132 -35.01739 -33.84928 -33.77155 -33.48525 -31.44327 -30.11877 -26.97488 -26.74682 -25.31110 -24.10878 -22.52890 -21.91385 -21.59729 -20.40427 -18.52900 -18.25524 -17.40813 -16.73260 -16.40273 -15.72083 -15.63457 -15.16987 -15.03537 -14.74397 -14.36749 -14.31053 -14.21186 -14.15539 -14.07057 -13.48183 -13.16983 -13.03266 -12.65275 -12.59966 -12.39394 -12.25727 -12.08626 -11.83825 -11.80070 -11.77611 -11.73890 -11.58309 -11.19639 -10.91477 -10.88548 -10.71497 -10.67074 -10.55812 -10.34874 -8.77843 -8.20603 -6.19448 1.30355 1.35352 1.45118 2.37042 3.01503 3.16106 3.70844 3.79620 3.96158 4.05421 4.11284 4.14970 4.18062 4.31424 4.35916 4.36899 4.42534 4.51993 4.53490 4.61567 4.71185 4.76809 4.78232 4.84522 4.85685 4.88456 5.01573 5.04247 5.06856 5.09845 5.12956 5.16332 5.16766 5.21585 5.29439 5.33272 5.34412 5.45627 5.47765 5.53720 5.59115 5.64407 5.74302 5.77163 5.90111 6.43652 6.55077 6.58405 6.85657 7.43163 8.96467 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.024910 B = 0.005817 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.777191 B = 4812.316166 C = 4913.604186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.010 3.990 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.305 1.305 6 H -0.248 1.248 7 C -0.485 4.485 8 H 0.035 0.965 9 C 0.003 3.997 10 C -0.116 4.116 11 C -0.094 4.094 12 C 0.124 3.876 13 N -0.550 5.550 14 C 0.087 3.913 15 C -0.139 4.139 16 C -0.107 4.107 17 C -0.139 4.139 18 C 0.091 3.909 19 C -0.101 4.101 20 C -0.109 4.109 21 C -0.102 4.102 22 C -0.092 4.092 23 C -0.092 4.092 24 H 0.260 0.740 25 H 0.020 0.980 26 H 0.064 0.936 27 H 0.030 0.970 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.045 0.955 44 H 0.075 0.925 45 H 0.041 0.959 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.935 -9.037 -13.519 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.185 4.185 3 Si 0.770 3.230 4 H -0.199 1.199 5 H -0.233 1.233 6 H -0.172 1.172 7 C -0.524 4.524 8 H 0.054 0.946 9 C -0.016 4.016 10 C -0.154 4.154 11 C -0.132 4.132 12 C 0.016 3.984 13 N -0.273 5.273 14 C -0.021 4.021 15 C -0.179 4.179 16 C -0.144 4.144 17 C -0.178 4.178 18 C -0.018 4.018 19 C -0.139 4.139 20 C -0.146 4.146 21 C -0.140 4.140 22 C -0.130 4.130 23 C -0.130 4.130 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.060 0.940 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.316 -8.990 -13.452 20.955 hybrid contribution 0.231 1.276 0.359 1.346 sum 13.548 -7.714 -13.093 20.359 Atomic orbital electron populations 1.70057 1.08075 1.27364 1.54135 1.25759 0.95205 1.02431 0.95117 0.85960 0.79202 0.79683 0.78199 1.19875 1.23318 1.17238 1.21223 0.91088 0.92485 1.47556 0.94638 1.19228 0.94206 0.94576 0.93612 1.21789 0.98998 0.97622 0.96943 1.21411 1.00629 0.94963 0.96187 1.20973 0.95744 0.92557 0.89125 1.60191 1.61998 1.03106 1.02037 1.21313 0.94270 0.96917 0.89640 1.21767 0.96096 0.97874 1.02121 1.21201 0.99437 0.94977 0.98774 1.21756 0.96592 1.01073 0.98394 1.21302 0.92362 0.89048 0.99054 1.21335 0.99893 0.98323 0.94357 1.21260 1.02442 0.94252 0.96684 1.21335 0.99138 0.96507 0.97021 1.21389 1.00388 0.97624 0.93615 1.21321 0.98969 0.95579 0.97175 0.93096 0.96178 0.91751 0.95206 0.92590 0.93748 0.94244 0.92207 0.93546 0.90804 0.92606 0.90220 0.93290 0.90308 0.91548 0.90144 0.93341 0.92358 0.90428 0.93628 0.90621 0.93982 0.92011 0.93342 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 2 C 0.01 0.62 5.45 84.65 0.46 1.08 16 3 Si 0.94 46.30 24.37 68.60 1.67 47.97 16 4 H -0.27 -12.91 6.87 99.48 0.68 -12.22 16 5 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 6 H -0.25 -11.31 6.53 99.48 0.65 -10.66 16 7 C -0.49 -27.49 7.19 25.60 0.18 -27.30 16 8 H 0.04 2.25 6.95 -2.91 -0.02 2.23 16 9 C 0.00 0.12 2.18 -11.54 -0.03 0.09 16 10 C -0.12 -4.82 4.94 30.59 0.15 -4.67 16 11 C -0.09 -3.76 4.33 30.60 0.13 -3.63 16 12 C 0.12 4.24 1.53 45.08 0.07 4.31 16 13 N -0.55 -16.95 4.10 -828.67 -3.40 -20.35 16 14 C 0.09 2.37 2.15 44.64 0.10 2.46 16 15 C -0.14 -3.12 4.99 30.04 0.15 -2.97 16 16 C -0.11 -2.01 5.13 30.03 0.15 -1.85 16 17 C -0.14 -2.87 4.95 30.03 0.15 -2.72 16 18 C 0.09 2.27 2.46 44.64 0.11 2.38 16 19 C -0.10 -2.18 5.50 30.19 0.17 -2.01 16 20 C -0.11 -2.11 5.12 30.07 0.15 -1.96 16 21 C -0.10 -2.39 5.50 30.19 0.17 -2.22 16 22 C -0.09 -3.46 4.89 30.61 0.15 -3.31 16 23 C -0.09 -3.58 5.42 30.61 0.17 -3.41 16 24 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 25 H 0.02 0.94 7.20 -2.39 -0.02 0.93 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.03 1.33 3.27 -2.39 -0.01 1.32 16 28 H 0.06 2.01 6.25 -2.39 -0.01 2.00 16 29 H 0.04 2.17 7.22 -2.39 -0.02 2.15 16 30 H 0.04 1.27 6.42 -2.39 -0.02 1.26 16 31 H 0.06 1.89 5.76 -1.79 -0.01 1.88 16 32 H 0.05 1.15 7.72 -2.14 -0.02 1.13 16 33 H 0.07 1.43 8.17 -1.88 -0.02 1.41 16 34 H 0.06 0.96 8.27 -1.53 -0.01 0.95 16 35 H 0.08 1.28 5.69 -2.50 -0.01 1.27 16 36 H 0.05 1.11 7.30 -2.14 -0.02 1.09 16 37 H 0.08 1.33 8.17 -1.88 -0.02 1.31 16 38 H 0.07 1.79 6.18 -1.79 -0.01 1.78 16 39 H 0.08 1.37 8.14 -2.08 -0.02 1.35 16 40 H 0.05 1.20 8.19 -2.09 -0.02 1.18 16 41 H 0.06 1.03 8.28 -1.51 -0.01 1.02 16 42 H 0.08 1.25 5.66 -2.53 -0.01 1.24 16 43 H 0.04 1.24 8.19 -2.09 -0.02 1.22 16 44 H 0.08 1.48 8.14 -2.07 -0.02 1.46 16 45 H 0.04 1.92 6.62 -2.39 -0.02 1.91 16 46 H 0.06 2.01 6.43 -2.39 -0.02 1.99 16 47 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -64.72 321.61 1.88 -62.84 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.88 Total: 16.02 kcal Atomic # 6 Polarization: -48.19 SS G_CDS: 2.43 Total: -45.75 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -3.10 Total: -81.07 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.67 Total: 47.97 kcal Total: -64.72 1.88 -62.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173336921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.566 kcal (2) G-P(sol) polarization free energy of solvation -64.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds