Wall clock time and date at job start Mon Mar 30 2020 02:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99971 * 2 1 4 4 H 1.48495 * 109.47299 * 239.99923 * 3 2 1 5 5 H 1.48497 * 109.47192 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46729 * 120.00127 * 3 2 1 7 7 C 1.37876 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00118 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00079 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47500 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47058 * 300.00195 * 10 9 7 12 12 C 1.52998 * 109.47208 * 299.99855 * 11 10 9 13 13 N 1.46900 * 109.47225 * 179.97438 * 12 11 10 14 14 C 1.46670 * 110.99967 * 182.02745 * 13 12 11 15 15 C 1.53310 * 108.32203 * 173.62721 * 14 13 12 16 16 C 1.52775 * 108.40582 * 62.80083 * 15 14 13 17 17 C 1.53143 * 110.45399 * 300.16242 * 16 15 14 18 18 H 1.09000 * 111.60328 * 285.74754 * 17 16 15 19 19 C 1.55113 * 106.83273 * 163.29187 * 17 16 15 20 20 C 1.55621 * 105.55739 * 267.09151 * 19 17 16 21 21 C 1.54573 * 106.77719 * 0.02562 * 20 19 17 22 22 C 1.42914 * 111.33963 * 54.10286 * 13 12 11 23 23 H 1.09000 * 109.00534 * 301.58534 * 22 13 12 24 24 C 1.53001 * 109.47149 * 59.99745 * 12 11 10 25 25 C 1.53002 * 109.47163 * 59.99845 * 9 7 2 26 26 H 0.96993 * 120.00217 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47360 * 300.00095 * 9 7 2 28 28 H 1.08994 * 109.47268 * 179.97438 * 10 9 7 29 29 H 1.09003 * 109.46995 * 59.99750 * 10 9 7 30 30 H 1.08996 * 109.46968 * 179.97438 * 11 10 9 31 31 H 1.09007 * 109.46728 * 59.99822 * 11 10 9 32 32 H 1.09003 * 109.46966 * 300.00337 * 12 11 10 33 33 H 1.09002 * 109.69099 * 53.92102 * 14 13 12 34 34 H 1.08999 * 109.72898 * 293.35479 * 14 13 12 35 35 H 1.09000 * 109.67585 * 303.07407 * 15 14 13 36 36 H 1.08996 * 109.70370 * 182.54921 * 15 14 13 37 37 H 1.08996 * 109.30849 * 179.85674 * 16 15 14 38 38 H 1.09010 * 109.30701 * 60.46197 * 16 15 14 39 39 H 1.09002 * 110.07391 * 27.07092 * 19 17 16 40 40 H 1.09000 * 110.07694 * 148.62359 * 19 17 16 41 41 H 1.08999 * 110.72289 * 240.23419 * 20 19 17 42 42 H 1.09004 * 109.19955 * 118.95212 * 20 19 17 43 43 H 1.08998 * 110.60143 * 217.48160 * 21 20 19 44 44 H 1.08998 * 110.73107 * 94.58969 * 21 20 19 45 45 H 1.09003 * 109.46702 * 60.00431 * 24 12 11 46 46 H 1.08999 * 109.47205 * 179.97438 * 24 12 11 47 47 H 1.08994 * 109.47708 * 180.02562 * 25 9 7 48 48 H 1.08996 * 109.47298 * 300.00658 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 3.1240 -3.5805 -1.2517 12 6 2.2435 -3.6610 -2.5003 13 7 3.0870 -3.5820 -3.7004 14 6 2.2712 -3.6078 -4.9190 15 6 3.1915 -3.3621 -6.1203 16 6 4.2006 -4.5065 -6.1970 17 6 5.0345 -4.5716 -4.9142 18 1 5.7705 -3.7687 -4.8728 19 6 5.7059 -5.9696 -4.8854 20 6 4.7402 -6.8798 -4.0726 21 6 3.5423 -5.9974 -3.6535 22 6 4.1199 -4.5694 -3.6759 23 1 4.7272 -4.4258 -2.7822 24 6 1.2492 -2.4981 -2.4990 25 6 0.3709 -2.5800 -1.2494 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5572 0.8896 28 1 1.7003 -4.6060 -0.0014 29 1 2.8727 -3.6048 0.8877 30 1 3.8326 -4.4087 -1.2524 31 1 3.6690 -2.6365 -1.2516 32 1 1.6984 -4.6050 -2.5003 33 1 1.5137 -2.8256 -4.8704 34 1 1.7891 -4.5804 -5.0184 35 1 3.7181 -2.4164 -5.9918 36 1 2.6006 -3.3317 -7.0357 37 1 4.8616 -4.3476 -7.0489 38 1 3.6680 -5.4485 -6.3288 39 1 5.8357 -6.3433 -5.9011 40 1 6.6707 -5.9111 -4.3815 41 1 5.2381 -7.2782 -3.1887 42 1 4.3977 -7.6967 -4.7079 43 1 3.2057 -6.2590 -2.6503 44 1 2.7247 -6.0920 -4.3680 45 1 1.7942 -1.5541 -2.4990 46 1 0.6222 -2.5551 -3.3888 47 1 -0.1744 -3.5237 -1.2493 48 1 -0.3373 -1.7515 -1.2490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337804.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:38 Heat of formation + Delta-G solvation = -25.938404 kcal Electronic energy + Delta-G solvation = -23723.360981 eV Core-core repulsion = 20776.284055 eV Total energy + Delta-G solvation = -2947.076926 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42320 -37.51565 -34.80659 -33.35354 -31.79526 -29.85520 -28.89929 -28.21333 -26.98236 -24.79605 -23.51960 -22.58294 -20.97157 -20.67363 -19.81078 -18.56207 -18.07332 -16.44031 -15.69473 -15.40122 -14.99319 -14.64138 -14.26250 -13.95703 -13.50994 -13.22550 -13.02887 -12.88916 -12.68194 -12.41545 -12.05349 -11.68756 -11.59211 -11.24592 -11.20184 -11.09671 -11.00947 -10.86801 -10.74991 -10.59117 -10.53480 -10.31907 -10.23543 -10.05906 -9.96649 -9.76710 -9.51321 -9.07918 -8.74022 -8.52238 -8.18969 -7.63641 -5.88310 -3.91787 3.38349 3.42574 3.46198 4.21676 4.52567 4.61567 4.72468 4.84191 5.11821 5.21175 5.25885 5.41555 5.42937 5.53611 5.58086 5.64726 5.68339 5.72370 5.78523 5.85204 5.91193 5.91786 5.98685 6.02491 6.12556 6.15593 6.16157 6.28026 6.32727 6.39243 6.42440 6.55094 6.58946 6.63284 6.67422 6.81156 6.84376 6.90188 7.19941 7.29403 7.54154 7.61059 7.77237 7.83365 7.85919 8.02942 8.24343 8.57786 9.09942 9.70985 11.17730 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.023669 B = 0.005288 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.682676 B = 5293.989927 C = 5579.167668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.884 3.116 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.496 4.496 8 H 0.054 0.946 9 C 0.044 3.956 10 C -0.106 4.106 11 C -0.099 4.099 12 C 0.103 3.897 13 N -0.537 5.537 14 C 0.058 3.942 15 C -0.118 4.118 16 C -0.111 4.111 17 C -0.084 4.084 18 H 0.080 0.920 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.162 4.162 22 C 0.099 3.901 23 H 0.085 0.915 24 C -0.092 4.092 25 C -0.107 4.107 26 H 0.258 0.742 27 H 0.022 0.978 28 H 0.030 0.970 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.025 0.975 33 H 0.081 0.919 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.031 0.969 47 H 0.010 0.990 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.328 -10.947 -10.946 17.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.026 3.974 10 C -0.144 4.144 11 C -0.137 4.137 12 C -0.003 4.003 13 N -0.259 5.259 14 C -0.069 4.069 15 C -0.156 4.156 16 C -0.148 4.148 17 C -0.103 4.103 18 H 0.098 0.902 19 C -0.159 4.159 20 C -0.157 4.157 21 C -0.201 4.201 22 C -0.011 4.011 23 H 0.103 0.897 24 C -0.130 4.130 25 C -0.145 4.145 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.043 0.957 33 H 0.099 0.901 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.050 0.950 47 H 0.029 0.971 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.397 -10.385 -10.945 16.804 hybrid contribution 0.053 0.072 -0.052 0.103 sum 7.450 -10.313 -10.997 16.816 Atomic orbital electron populations 1.69856 1.05814 1.26167 1.51459 1.24912 0.94724 0.98719 0.95546 0.86792 0.79699 0.83764 0.78554 1.20282 1.21542 1.20525 1.21097 0.92669 0.90365 1.49307 0.92753 1.18681 0.92636 0.92112 0.93978 1.21553 0.98293 0.98502 0.96070 1.21529 0.97228 1.01208 0.93746 1.21570 0.93154 0.97478 0.88144 1.59740 1.14522 1.49116 1.02480 1.22080 0.95447 0.99972 0.89409 1.21588 0.97524 0.99238 0.97233 1.21575 0.97708 0.98654 0.96900 1.21973 0.96970 0.96752 0.94567 0.90156 1.22693 0.98380 0.95051 0.99774 1.22345 0.96319 0.97714 0.99310 1.22972 0.97989 0.97933 1.01223 1.21382 0.93329 0.88153 0.98197 0.89742 1.21469 0.96142 0.98394 0.97010 1.21505 0.98717 0.99167 0.95135 0.93219 0.95959 0.95158 0.93528 0.94575 0.90421 0.95701 0.90053 0.95495 0.91033 0.92131 0.92604 0.92489 0.91787 0.92069 0.91971 0.92649 0.91697 0.91878 0.90288 0.95040 0.97136 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 11.32 55.43 0.63 -24.72 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.88 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.50 -13.22 6.61 -34.44 -0.23 -13.45 16 8 H 0.05 1.45 6.71 -52.49 -0.35 1.10 16 9 C 0.04 1.09 2.59 -91.77 -0.24 0.85 16 10 C -0.11 -2.22 5.41 -26.73 -0.14 -2.36 16 11 C -0.10 -1.91 4.52 -26.73 -0.12 -2.03 16 12 C 0.10 1.90 1.60 -67.71 -0.11 1.79 16 13 N -0.54 -8.71 4.29 -220.44 -0.95 -9.66 16 14 C 0.06 0.86 5.03 -3.79 -0.02 0.84 16 15 C -0.12 -1.46 6.11 -26.69 -0.16 -1.63 16 16 C -0.11 -1.25 4.71 -26.77 -0.13 -1.37 16 17 C -0.08 -1.01 3.50 -88.94 -0.31 -1.32 16 18 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 19 C -0.12 -1.24 6.28 -24.22 -0.15 -1.39 16 20 C -0.12 -1.28 6.81 -24.51 -0.17 -1.45 16 21 C -0.16 -2.10 4.80 -25.35 -0.12 -2.22 16 22 C 0.10 1.41 2.05 -68.78 -0.14 1.27 16 23 H 0.08 1.29 6.04 -51.93 -0.31 0.98 16 24 C -0.09 -1.95 4.70 -26.76 -0.13 -2.07 16 25 C -0.11 -2.51 5.23 -26.75 -0.14 -2.65 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.04 0.62 6.34 -51.93 -0.33 0.29 16 31 H 0.08 1.66 6.62 -51.92 -0.34 1.32 16 32 H 0.03 0.47 7.24 -51.93 -0.38 0.09 16 33 H 0.08 1.27 5.95 -51.93 -0.31 0.96 16 34 H 0.03 0.39 6.55 -51.93 -0.34 0.05 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.64 7.30 -51.92 -0.38 0.26 16 39 H 0.06 0.59 7.75 -51.93 -0.40 0.19 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.90 7.80 -51.93 -0.40 0.50 16 44 H 0.06 0.85 6.03 -51.93 -0.31 0.54 16 45 H 0.08 1.89 7.22 -51.93 -0.37 1.51 16 46 H 0.03 0.61 6.24 -51.93 -0.32 0.29 16 47 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 LS Contribution 333.43 15.07 5.02 5.02 Total: -1.00 -26.86 333.43 -11.38 -38.24 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -8.66 Total: 0.35 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: -2.40 Total: -25.61 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: -0.32 Total: -34.38 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.86 -11.38 -38.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337804.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.299 kcal (2) G-P(sol) polarization free energy of solvation -26.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds