Wall clock time and date at job start Mon Mar 30 2020 02:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99759 * 2 1 4 4 H 1.48497 * 109.47247 * 270.00009 * 3 2 1 5 5 H 1.48504 * 109.47061 * 30.00272 * 3 2 1 6 6 H 1.48502 * 109.46603 * 150.00254 * 3 2 1 7 7 C 1.37870 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00534 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99983 * 180.02562 * 7 2 1 10 10 C 1.53936 * 113.73568 * 179.97438 * 9 7 2 11 11 N 1.47959 * 86.30043 * 221.86221 * 10 9 7 12 12 C 1.46903 * 111.00161 * 137.63750 * 11 10 9 13 13 H 1.09006 * 109.46564 * 308.49691 * 12 11 10 14 14 C 1.52994 * 109.47324 * 188.50252 * 12 11 10 15 15 C 1.52996 * 109.47205 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47424 * 59.99786 * 15 14 12 17 17 C 1.52999 * 109.46843 * 300.00101 * 16 15 14 18 18 C 1.52996 * 109.47337 * 179.97438 * 17 16 15 19 19 C 1.52994 * 109.47599 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.46805 * 300.00123 * 19 18 17 21 21 C 1.52996 * 109.47350 * 60.00115 * 20 19 18 22 22 C 1.52997 * 109.47339 * 300.00211 * 17 16 15 23 23 C 1.52996 * 109.46858 * 68.49706 * 12 11 10 24 24 C 1.48301 * 90.63061 * 24.68163 * 11 10 9 25 25 H 0.97004 * 119.99954 * 359.97438 * 1 2 3 26 26 H 1.09008 * 112.93432 * 311.56300 * 9 7 2 27 27 H 1.08994 * 113.75651 * 336.23110 * 10 9 7 28 28 H 1.08997 * 113.75789 * 107.48903 * 10 9 7 29 29 H 1.09009 * 109.46964 * 299.99780 * 14 12 11 30 30 H 1.09001 * 109.47522 * 59.99541 * 14 12 11 31 31 H 1.09000 * 109.47238 * 299.99743 * 15 14 12 32 32 H 1.08997 * 109.47278 * 179.97438 * 15 14 12 33 33 H 1.08999 * 109.47243 * 180.02562 * 16 15 14 34 34 H 1.09000 * 109.46947 * 59.99780 * 16 15 14 35 35 H 1.09003 * 109.47352 * 300.00863 * 18 17 16 36 36 H 1.09001 * 109.46961 * 59.99768 * 18 17 16 37 37 H 1.09001 * 109.47522 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47297 * 59.99798 * 19 18 17 39 39 H 1.08999 * 109.47447 * 299.99870 * 20 19 18 40 40 H 1.09002 * 109.47330 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.47654 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.47046 * 59.99509 * 21 20 19 43 43 H 1.08999 * 109.46983 * 299.99897 * 22 17 16 44 44 H 1.08994 * 109.47405 * 59.99578 * 22 17 16 45 45 H 1.09000 * 109.47743 * 299.99970 * 23 12 11 46 46 H 1.08994 * 109.47253 * 60.00819 * 23 12 11 47 47 H 1.08992 * 113.76346 * 220.99379 * 24 11 10 48 48 H 1.09003 * 113.85961 * 89.64096 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.1311 -2.6032 0.0000 11 7 5.0989 -2.0734 0.9858 12 6 5.3301 -3.0394 2.0682 13 1 4.3729 -3.3602 2.4793 14 6 6.1634 -2.3813 3.1697 15 6 6.4036 -3.3872 4.2972 16 6 7.1542 -4.6013 3.7463 17 6 6.3209 -5.2593 2.6448 18 6 7.0716 -6.4730 2.0934 19 6 6.2387 -7.1307 0.9915 20 6 4.8948 -7.5810 1.5680 21 6 4.1440 -6.3673 2.1193 22 6 4.9771 -5.7091 3.2217 23 6 6.0809 -4.2530 1.5167 24 6 4.1307 -1.0291 1.3997 25 1 -0.4850 0.8401 0.0004 26 1 3.9366 -0.5275 -0.7505 27 1 3.4720 -3.3727 0.4016 28 1 4.5827 -2.8843 -0.9514 29 1 7.1206 -2.0604 2.7585 30 1 5.6285 -1.5166 3.5625 31 1 5.4463 -3.7077 4.7083 32 1 6.9976 -2.9186 5.0818 33 1 7.3249 -5.3181 4.5495 34 1 8.1115 -4.2808 3.3353 35 1 8.0289 -6.1523 1.6824 36 1 7.2431 -7.1898 2.8965 37 1 6.7734 -7.9957 0.5990 38 1 6.0675 -6.4138 0.1884 39 1 5.0659 -8.2979 2.3711 40 1 4.3011 -8.0492 0.7829 41 1 3.1865 -6.6880 2.5297 42 1 3.9729 -5.6504 1.3163 43 1 5.1482 -6.4257 4.0250 44 1 4.4424 -4.8443 3.6142 45 1 5.4873 -4.7219 0.7320 46 1 7.0380 -3.9322 1.1057 47 1 4.5835 -0.0520 1.5672 48 1 3.4706 -1.3365 2.2108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173345002.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:10 Heat of formation + Delta-G solvation = -20.916042 kcal Electronic energy + Delta-G solvation = -23458.146288 eV Core-core repulsion = 20511.287148 eV Total energy + Delta-G solvation = -2946.859140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.78554 -39.99484 -36.68949 -34.69310 -32.56643 -31.85608 -31.43814 -29.11193 -27.42006 -26.24456 -25.45354 -23.74936 -23.06006 -21.82668 -20.78733 -20.42648 -19.18250 -18.83626 -17.26413 -16.42753 -16.32890 -15.98516 -15.52166 -15.27979 -15.11780 -14.89617 -14.79489 -14.59125 -13.99185 -13.88562 -13.62212 -13.42507 -13.11554 -13.02390 -12.89188 -12.73318 -12.46206 -12.16812 -12.09519 -11.90977 -11.84171 -11.80738 -11.66307 -11.57032 -11.39195 -11.19663 -11.05289 -10.78804 -10.70027 -10.56499 -10.50355 -9.59176 -8.30426 -6.35299 1.36796 1.38495 1.51417 2.36682 3.03339 3.13081 3.66093 3.67708 3.85261 3.99765 4.10830 4.16114 4.18348 4.29126 4.33668 4.37257 4.46633 4.49505 4.55876 4.56219 4.63444 4.67421 4.70091 4.73106 4.76220 4.85396 4.88041 4.92766 5.00927 5.08486 5.12509 5.13409 5.19505 5.21021 5.22013 5.26915 5.33581 5.35189 5.40361 5.46924 5.48987 5.54008 5.56081 5.64546 5.68839 5.73396 6.27526 6.36182 6.70112 7.31367 8.85832 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.023624 B = 0.005048 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.969761 B = 5545.817599 C = 6124.078321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.016 3.984 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.235 1.235 7 C -0.515 4.515 8 H 0.030 0.970 9 C -0.015 4.015 10 C 0.026 3.974 11 N -0.478 5.478 12 C 0.052 3.948 13 H 0.028 0.972 14 C -0.105 4.105 15 C -0.115 4.115 16 C -0.102 4.102 17 C -0.049 4.049 18 C -0.101 4.101 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.126 4.126 22 C -0.107 4.107 23 C -0.090 4.090 24 C 0.007 3.993 25 H 0.266 0.734 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.189 -12.748 7.975 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.182 4.182 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.158 1.158 7 C -0.553 4.553 8 H 0.048 0.952 9 C -0.035 4.035 10 C -0.103 4.103 11 N -0.200 5.200 12 C -0.057 4.057 13 H 0.046 0.954 14 C -0.143 4.143 15 C -0.153 4.153 16 C -0.140 4.140 17 C -0.049 4.049 18 C -0.138 4.138 19 C -0.159 4.159 20 C -0.150 4.150 21 C -0.164 4.164 22 C -0.145 4.145 23 C -0.128 4.128 24 C -0.122 4.122 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 17.716 -12.476 7.785 23.024 hybrid contribution -1.530 0.705 0.072 1.686 sum 16.186 -11.771 7.858 21.501 Atomic orbital electron populations 1.70065 1.08366 1.28150 1.52342 1.25895 0.95364 1.03219 0.93704 0.85836 0.80177 0.78345 0.79168 1.19571 1.21394 1.15771 1.21189 0.90882 0.92862 1.50399 0.95204 1.20773 0.93477 0.95143 0.94059 1.23633 0.92846 0.96834 0.96952 1.68560 1.32424 1.08760 1.10271 1.22234 0.97627 0.93362 0.92493 0.95358 1.21459 0.99717 0.97886 0.95208 1.21540 1.00780 0.95909 0.97055 1.21566 0.98139 0.96622 0.97629 1.20496 0.95186 0.94572 0.94688 1.21529 0.97938 0.96065 0.98305 1.21577 0.95944 1.00294 0.98132 1.21479 0.96189 0.96939 1.00378 1.21591 0.98528 0.97792 0.98452 1.21641 0.95384 0.99721 0.97707 1.21562 0.99798 0.93662 0.97732 1.24155 0.93048 0.96189 0.98845 0.92518 0.92791 0.93395 0.90080 0.91520 0.93636 0.92362 0.90663 0.90515 0.91478 0.91584 0.90769 0.90982 0.93045 0.91053 0.92424 0.92687 0.93902 0.90894 0.93165 0.92501 0.91959 0.91012 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.59 13.96 21.44 0.30 -59.29 16 2 C 0.02 0.91 5.47 84.65 0.46 1.37 16 3 Si 0.94 44.15 27.08 68.60 1.86 46.01 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 6 H -0.23 -10.10 5.46 99.48 0.54 -9.56 16 7 C -0.52 -29.62 9.32 25.60 0.24 -29.39 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 9 C -0.02 -0.72 2.88 -10.90 -0.03 -0.75 16 10 C 0.03 1.07 6.54 86.41 0.57 1.63 16 11 N -0.48 -17.85 5.98 -879.39 -5.26 -23.11 16 12 C 0.05 1.62 1.26 44.91 0.06 1.67 16 13 H 0.03 1.01 5.98 -2.38 -0.01 0.99 16 14 C -0.10 -2.84 5.29 30.59 0.16 -2.68 16 15 C -0.11 -2.41 5.65 30.59 0.17 -2.24 16 16 C -0.10 -1.85 4.73 30.60 0.14 -1.70 16 17 C -0.05 -1.00 0.51 -52.16 -0.03 -1.02 16 18 C -0.10 -1.72 4.73 30.59 0.14 -1.57 16 19 C -0.12 -2.23 5.65 30.59 0.17 -2.06 16 20 C -0.11 -2.15 5.92 30.59 0.18 -1.97 16 21 C -0.13 -2.98 5.65 30.61 0.17 -2.81 16 22 C -0.11 -2.35 4.04 30.61 0.12 -2.23 16 23 C -0.09 -2.36 3.36 30.61 0.10 -2.25 16 24 C 0.01 0.29 5.96 86.34 0.51 0.80 16 25 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 26 H 0.05 2.53 7.10 -2.38 -0.02 2.52 16 27 H 0.05 2.05 7.77 -2.39 -0.02 2.04 16 28 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 29 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.04 1.34 7.61 -2.39 -0.02 1.32 16 31 H 0.06 1.29 6.43 -2.39 -0.02 1.28 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 1.10 6.43 -2.39 -0.02 1.09 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.04 1.22 6.43 -2.39 -0.02 1.21 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 44 H 0.05 1.28 4.81 -2.39 -0.01 1.27 16 45 H 0.06 1.62 4.13 -2.39 -0.01 1.62 16 46 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.07 2.95 6.97 -2.39 -0.02 2.93 16 48 H 0.05 2.18 7.72 -2.39 -0.02 2.16 16 Total: -1.00 -62.98 337.26 0.79 -62.18 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.74 Total: 19.40 kcal Atomic # 6 Polarization: -48.35 SS G_CDS: 3.16 Total: -45.19 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -4.96 Total: -82.40 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.86 Total: 46.01 kcal Total: -62.98 0.79 -62.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173345002.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.267 kcal (2) G-P(sol) polarization free energy of solvation -62.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds