Wall clock time and date at job start Mon Mar 30 2020 02:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40081 * 126.03362 * 2 1 4 4 C 1.30846 * 108.20675 * 180.17039 * 3 2 1 5 5 C 1.39867 * 108.19622 * 359.59304 * 4 3 2 6 6 C 1.34946 * 126.04095 * 179.71533 * 2 1 3 7 7 C 1.50697 * 126.12535 * 0.03135 * 6 2 1 8 8 C 1.53003 * 109.47006 * 266.16706 * 7 6 2 9 9 H 1.09006 * 109.87951 * 54.36256 * 8 7 6 10 10 C 1.54314 * 109.89278 * 293.32545 * 8 7 6 11 11 C 1.55398 * 102.90306 * 218.40746 * 10 8 7 12 12 C 1.54910 * 101.73962 * 35.48038 * 11 10 8 13 13 N 1.47444 * 109.88872 * 175.38673 * 8 7 6 14 14 C 1.46907 * 110.99825 * 356.15160 * 13 8 7 15 15 C 1.53009 * 109.46865 * 176.32782 * 14 13 8 16 16 C 1.53004 * 109.46737 * 183.53504 * 15 14 13 17 17 C 1.50697 * 109.46831 * 184.88980 * 16 15 14 18 18 H 1.08003 * 119.99900 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00059 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00134 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99773 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47077 * 90.00434 * 21 19 17 23 23 H 1.48494 * 109.46873 * 210.00366 * 21 19 17 24 24 H 1.48503 * 109.47159 * 330.00373 * 21 19 17 25 25 H 1.09000 * 109.46998 * 274.93683 * 1 2 3 26 26 H 1.09000 * 109.47322 * 34.94763 * 1 2 3 27 27 H 1.09000 * 109.46807 * 154.94220 * 1 2 3 28 28 H 1.07995 * 125.90096 * 179.84889 * 4 3 2 29 29 H 1.08005 * 126.03440 * 180.28756 * 5 4 3 30 30 H 1.09001 * 109.47561 * 26.16856 * 7 6 2 31 31 H 1.08999 * 109.47627 * 146.17126 * 7 6 2 32 32 H 1.08998 * 110.70301 * 336.69718 * 10 8 7 33 33 H 1.09002 * 110.70595 * 99.92836 * 10 8 7 34 34 H 1.08996 * 110.87283 * 277.39696 * 11 10 8 35 35 H 1.08999 * 111.05854 * 153.64352 * 11 10 8 36 36 H 1.08995 * 110.37479 * 204.18890 * 12 11 10 37 37 H 1.09003 * 110.46828 * 81.89620 * 12 11 10 38 38 H 1.08997 * 109.46959 * 296.32379 * 14 13 8 39 39 H 1.08998 * 109.47224 * 56.33115 * 14 13 8 40 40 H 1.09001 * 109.46724 * 303.53301 * 15 14 13 41 41 H 1.08996 * 109.46931 * 63.53803 * 15 14 13 42 42 H 1.08997 * 109.46871 * 304.88711 * 16 15 14 43 43 H 1.08997 * 109.46776 * 64.88986 * 16 15 14 44 44 H 0.96999 * 120.00317 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7322 -0.0037 5 6 3.5438 -0.6664 0.0033 6 6 2.2590 -1.0912 0.0054 7 6 1.7975 -2.5257 0.0119 8 6 1.7325 -3.0340 1.4535 9 1 1.1104 -2.3694 2.0532 10 6 3.1538 -3.1034 2.0504 11 6 3.1104 -4.4040 2.8998 12 6 2.1968 -5.3121 2.0392 13 7 1.1771 -4.3996 1.4793 14 6 0.7693 -4.8275 0.1344 15 6 0.2847 -6.2780 0.1858 16 6 -0.0567 -6.7519 -1.2283 17 6 -0.6466 -8.1372 -1.1650 18 1 -0.7664 -8.6301 -0.2115 19 6 -1.0333 -8.7755 -2.3244 20 7 -1.5485 -9.9842 -2.2691 21 14 -0.8267 -7.9227 -3.9735 22 1 0.5092 -8.2474 -4.5347 23 1 -1.8828 -8.3890 -4.9075 24 1 -0.9424 -6.4537 -3.7890 25 1 -0.3633 0.0884 1.0239 26 1 -0.3634 0.8423 -0.5887 27 1 -0.3633 -0.9310 -0.4353 28 1 4.4054 1.3712 -0.0070 29 1 4.4212 -1.2961 0.0068 30 1 0.8084 -2.5913 -0.4415 31 1 2.4991 -3.1357 -0.5571 32 1 3.9001 -3.1844 1.2602 33 1 3.3502 -2.2355 2.6799 34 1 2.6648 -4.2153 3.8764 35 1 4.1051 -4.8373 3.0037 36 1 1.7248 -6.0732 2.6604 37 1 2.7694 -5.7788 1.2377 38 1 -0.0378 -4.1872 -0.2214 39 1 1.6190 -4.7523 -0.5441 40 1 1.0706 -6.9091 0.6008 41 1 -0.6032 -6.3423 0.8149 42 1 -0.7793 -6.0695 -1.6756 43 1 0.8493 -6.7701 -1.8340 44 1 -1.8209 -10.4331 -3.0847 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177008099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:07 Heat of formation + Delta-G solvation = 73.760886 kcal Electronic energy + Delta-G solvation = -21798.480754 eV Core-core repulsion = 18752.186770 eV Total energy + Delta-G solvation = -3046.293984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.46731 -39.44936 -34.52238 -33.69020 -32.69412 -32.43886 -30.48292 -28.98455 -26.89580 -26.48932 -25.60132 -23.08128 -21.59764 -21.09438 -20.37633 -20.01510 -18.96921 -16.90756 -16.60980 -16.04561 -15.82828 -15.32938 -14.91860 -14.53829 -14.22971 -14.09104 -13.71790 -13.60444 -12.97896 -12.83265 -12.68098 -12.58471 -12.43161 -12.15578 -11.94067 -11.64308 -11.36257 -11.10308 -11.06120 -10.86283 -10.81934 -10.74523 -10.56657 -9.96767 -9.72892 -9.59613 -9.41902 -9.18226 -8.66930 -8.54719 -8.10144 -6.04919 -4.02763 1.72640 2.37526 2.70344 3.28790 3.36504 3.39191 3.97055 4.40023 4.43867 4.49457 4.52928 4.70861 4.75226 4.95577 4.97516 5.06349 5.18875 5.21142 5.28835 5.30079 5.46193 5.54978 5.58168 5.61411 5.63694 5.65546 5.77756 5.87671 5.97039 6.07018 6.11227 6.14441 6.21894 6.50151 6.51755 6.55435 6.84856 6.86183 7.13482 7.22751 7.33087 7.42815 7.57594 7.79357 8.54220 9.00746 9.57658 11.08710 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.004082 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.619818 B = 6857.945484 C = 7802.363667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.371 5.371 3 N -0.304 5.304 4 C 0.045 3.955 5 C -0.275 4.275 6 C 0.099 3.901 7 C -0.080 4.080 8 C 0.082 3.918 9 H 0.080 0.920 10 C -0.133 4.133 11 C -0.131 4.131 12 C 0.042 3.958 13 N -0.522 5.522 14 C 0.043 3.957 15 C -0.101 4.101 16 C -0.012 4.012 17 C -0.519 4.519 18 H 0.072 0.928 19 C 0.065 3.935 20 N -0.904 5.904 21 Si 0.880 3.120 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.181 0.819 29 H 0.144 0.856 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.035 0.965 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.014 0.986 43 H 0.008 0.992 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.821 19.258 7.154 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.153 5.153 3 N -0.125 5.125 4 C -0.141 4.141 5 C -0.304 4.304 6 C -0.030 4.030 7 C -0.120 4.120 8 C -0.027 4.027 9 H 0.098 0.902 10 C -0.171 4.171 11 C -0.169 4.169 12 C -0.085 4.085 13 N -0.246 5.246 14 C -0.085 4.085 15 C -0.139 4.139 16 C -0.050 4.050 17 C -0.557 4.557 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.543 5.543 21 Si 0.707 3.293 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.191 1.191 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.198 0.802 29 H 0.162 0.838 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.033 0.967 43 H 0.026 0.974 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.331 20.117 7.349 22.981 hybrid contribution 1.276 -0.353 -1.544 2.033 sum 9.607 19.764 5.806 22.729 Atomic orbital electron populations 1.21886 0.74397 1.04501 1.03622 1.48501 1.06539 1.03399 1.56879 1.77344 1.01863 1.08029 1.25288 1.23796 0.95179 0.95116 0.99985 1.21216 0.96226 0.94899 1.18056 1.21055 0.91279 0.90259 1.00368 1.21050 1.03143 0.88627 0.99191 1.22363 0.95160 0.91609 0.93544 0.90165 1.22896 0.96466 0.98263 0.99496 1.22766 0.99729 0.95443 0.98990 1.23063 0.92088 0.95664 0.97706 1.63873 1.37027 1.00559 1.23138 1.22595 0.99063 0.98750 0.88052 1.21539 1.00694 0.91817 0.99868 1.19544 0.95924 0.97129 0.92433 1.21145 1.40542 0.98932 0.95055 0.91026 1.25040 0.94690 0.94686 0.99124 1.69913 1.42921 1.13150 1.28353 0.86782 0.77927 0.80504 0.84071 1.20352 1.21394 1.19093 0.90573 0.89484 0.89145 0.80236 0.83798 0.89523 0.88823 0.91168 0.91055 0.90938 0.90968 0.89949 0.93112 0.91130 0.94716 0.92776 0.91955 0.96729 0.97354 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.83 11.33 59.85 0.68 1.51 16 2 N -0.37 -4.31 4.01 -63.88 -0.26 -4.56 16 3 N -0.30 -3.88 12.58 30.62 0.39 -3.49 16 4 C 0.04 0.48 12.03 -17.36 -0.21 0.27 16 5 C -0.27 -2.94 9.96 -40.01 -0.40 -3.34 16 6 C 0.10 1.11 5.90 -82.27 -0.49 0.63 16 7 C -0.08 -0.87 3.60 -27.88 -0.10 -0.97 16 8 C 0.08 0.92 3.44 -66.72 -0.23 0.69 16 9 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 10 C -0.13 -1.32 5.57 -24.77 -0.14 -1.46 16 11 C -0.13 -1.33 7.08 -24.45 -0.17 -1.50 16 12 C 0.04 0.54 5.29 -2.30 -0.01 0.52 16 13 N -0.52 -7.05 5.27 -223.33 -1.18 -8.22 16 14 C 0.04 0.65 3.72 -3.82 -0.01 0.64 16 15 C -0.10 -1.95 5.04 -26.72 -0.13 -2.08 16 16 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 17 C -0.52 -14.74 9.66 -34.44 -0.33 -15.08 16 18 H 0.07 2.19 7.99 -52.48 -0.42 1.78 16 19 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 21 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.27 -6.24 6.54 56.52 0.37 -5.88 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.09 0.68 6.85 -51.93 -0.36 0.32 16 28 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.14 1.30 7.80 -52.48 -0.41 0.89 16 30 H 0.09 0.94 5.14 -51.93 -0.27 0.68 16 31 H 0.09 1.04 6.85 -51.93 -0.36 0.68 16 32 H 0.07 0.67 7.35 -51.93 -0.38 0.29 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 37 H 0.05 0.67 7.42 -51.93 -0.39 0.29 16 38 H 0.07 1.04 6.86 -51.93 -0.36 0.69 16 39 H 0.03 0.51 6.40 -51.93 -0.33 0.18 16 40 H 0.05 1.04 6.69 -51.93 -0.35 0.69 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 43 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -32.40 341.77 -8.90 -41.30 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.35 Total: -1.22 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.76 Total: -18.76 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.27 Total: -43.43 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.40 -8.90 -41.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177008099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.065 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds