Wall clock time and date at job start Mon Mar 30 2020 02:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40081 * 126.03362 * 2 1 4 4 C 1.30846 * 108.20675 * 180.17039 * 3 2 1 5 5 C 1.39867 * 108.19622 * 359.59304 * 4 3 2 6 6 C 1.34946 * 126.04095 * 179.71533 * 2 1 3 7 7 C 1.50697 * 126.12535 * 0.03135 * 6 2 1 8 8 C 1.53003 * 109.47006 * 266.16706 * 7 6 2 9 9 H 1.09006 * 109.87951 * 54.36256 * 8 7 6 10 10 C 1.54314 * 109.89278 * 293.32545 * 8 7 6 11 11 C 1.55398 * 102.90306 * 218.40746 * 10 8 7 12 12 C 1.54910 * 101.73962 * 35.48038 * 11 10 8 13 13 N 1.47444 * 109.88872 * 175.38673 * 8 7 6 14 14 C 1.46907 * 110.99825 * 356.15160 * 13 8 7 15 15 C 1.53009 * 109.46865 * 176.32782 * 14 13 8 16 16 C 1.53004 * 109.46737 * 183.53504 * 15 14 13 17 17 C 1.50697 * 109.46831 * 184.88980 * 16 15 14 18 18 H 1.08003 * 119.99900 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00059 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00134 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99773 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47077 * 90.00434 * 21 19 17 23 23 H 1.48494 * 109.46873 * 210.00366 * 21 19 17 24 24 H 1.48503 * 109.47159 * 330.00373 * 21 19 17 25 25 H 1.09000 * 109.46998 * 274.93683 * 1 2 3 26 26 H 1.09000 * 109.47322 * 34.94763 * 1 2 3 27 27 H 1.09000 * 109.46807 * 154.94220 * 1 2 3 28 28 H 1.07995 * 125.90096 * 179.84889 * 4 3 2 29 29 H 1.08005 * 126.03440 * 180.28756 * 5 4 3 30 30 H 1.09001 * 109.47561 * 26.16856 * 7 6 2 31 31 H 1.08999 * 109.47627 * 146.17126 * 7 6 2 32 32 H 1.08998 * 110.70301 * 336.69718 * 10 8 7 33 33 H 1.09002 * 110.70595 * 99.92836 * 10 8 7 34 34 H 1.08996 * 110.87283 * 277.39696 * 11 10 8 35 35 H 1.08999 * 111.05854 * 153.64352 * 11 10 8 36 36 H 1.08995 * 110.37479 * 204.18890 * 12 11 10 37 37 H 1.09003 * 110.46828 * 81.89620 * 12 11 10 38 38 H 1.08997 * 109.46959 * 296.32379 * 14 13 8 39 39 H 1.08998 * 109.47224 * 56.33115 * 14 13 8 40 40 H 1.09001 * 109.46724 * 303.53301 * 15 14 13 41 41 H 1.08996 * 109.46931 * 63.53803 * 15 14 13 42 42 H 1.08997 * 109.46871 * 304.88711 * 16 15 14 43 43 H 1.08997 * 109.46776 * 64.88986 * 16 15 14 44 44 H 0.96999 * 120.00317 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7322 -0.0037 5 6 3.5438 -0.6664 0.0033 6 6 2.2590 -1.0912 0.0054 7 6 1.7975 -2.5257 0.0119 8 6 1.7325 -3.0340 1.4535 9 1 1.1104 -2.3694 2.0532 10 6 3.1538 -3.1034 2.0504 11 6 3.1104 -4.4040 2.8998 12 6 2.1968 -5.3121 2.0392 13 7 1.1771 -4.3996 1.4793 14 6 0.7693 -4.8275 0.1344 15 6 0.2847 -6.2780 0.1858 16 6 -0.0567 -6.7519 -1.2283 17 6 -0.6466 -8.1372 -1.1650 18 1 -0.7664 -8.6301 -0.2115 19 6 -1.0333 -8.7755 -2.3244 20 7 -1.5485 -9.9842 -2.2691 21 14 -0.8267 -7.9227 -3.9735 22 1 0.5092 -8.2474 -4.5347 23 1 -1.8828 -8.3890 -4.9075 24 1 -0.9424 -6.4537 -3.7890 25 1 -0.3633 0.0884 1.0239 26 1 -0.3634 0.8423 -0.5887 27 1 -0.3633 -0.9310 -0.4353 28 1 4.4054 1.3712 -0.0070 29 1 4.4212 -1.2961 0.0068 30 1 0.8084 -2.5913 -0.4415 31 1 2.4991 -3.1357 -0.5571 32 1 3.9001 -3.1844 1.2602 33 1 3.3502 -2.2355 2.6799 34 1 2.6648 -4.2153 3.8764 35 1 4.1051 -4.8373 3.0037 36 1 1.7248 -6.0732 2.6604 37 1 2.7694 -5.7788 1.2377 38 1 -0.0378 -4.1872 -0.2214 39 1 1.6190 -4.7523 -0.5441 40 1 1.0706 -6.9091 0.6008 41 1 -0.6032 -6.3423 0.8149 42 1 -0.7793 -6.0695 -1.6756 43 1 0.8493 -6.7701 -1.8340 44 1 -1.8209 -10.4331 -3.0847 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177008099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:06 Heat of formation + Delta-G solvation = 52.917507 kcal Electronic energy + Delta-G solvation = -21799.384591 eV Core-core repulsion = 18752.186770 eV Total energy + Delta-G solvation = -3047.197821 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.26955 -40.43042 -36.16827 -34.49827 -34.28340 -33.48326 -31.96118 -29.89838 -28.12896 -27.59718 -26.46261 -24.59748 -22.70413 -22.08285 -21.43426 -21.13795 -19.99654 -18.82974 -17.64378 -17.03956 -16.75600 -16.31243 -16.10191 -16.01335 -15.51066 -14.98921 -14.83173 -14.60382 -14.40087 -14.05685 -13.74845 -13.60895 -13.49583 -13.24329 -12.98927 -12.94438 -12.70954 -12.49903 -12.16331 -12.01078 -11.83308 -11.77047 -11.65195 -11.53553 -11.43916 -11.34220 -11.20029 -10.75421 -10.24125 -9.48304 -9.12446 -8.28481 -6.32737 0.91856 1.36362 1.38443 1.50270 1.65515 1.92455 2.36926 2.97210 3.07035 3.63628 3.64813 3.73940 3.83707 3.90578 4.13687 4.24630 4.28158 4.33594 4.36078 4.41528 4.46792 4.61911 4.62971 4.68398 4.75348 4.83904 4.84912 4.90859 4.99207 4.99478 5.07174 5.09058 5.10556 5.21759 5.30503 5.40175 5.54552 5.62480 5.67761 5.77780 6.06857 6.09556 6.18337 6.32009 6.76065 6.78264 7.31897 8.88712 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.004082 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.619818 B = 6857.945484 C = 7802.363667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.380 5.380 3 N -0.337 5.337 4 C 0.041 3.959 5 C -0.279 4.279 6 C 0.091 3.909 7 C -0.072 4.072 8 C 0.086 3.914 9 H 0.077 0.923 10 C -0.126 4.126 11 C -0.123 4.123 12 C 0.037 3.963 13 N -0.533 5.533 14 C 0.055 3.945 15 C -0.092 4.092 16 C -0.009 4.009 17 C -0.533 4.533 18 H 0.028 0.972 19 C 0.001 3.999 20 N -0.954 5.954 21 Si 0.953 3.047 22 H -0.266 1.266 23 H -0.286 1.286 24 H -0.243 1.243 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.207 0.793 29 H 0.160 0.840 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.022 0.978 43 H 0.018 0.982 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.282 21.479 6.341 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.162 5.162 3 N -0.159 5.159 4 C -0.143 4.143 5 C -0.308 4.308 6 C -0.038 4.038 7 C -0.112 4.112 8 C -0.023 4.023 9 H 0.095 0.905 10 C -0.164 4.164 11 C -0.161 4.161 12 C -0.091 4.091 13 N -0.257 5.257 14 C -0.072 4.072 15 C -0.130 4.130 16 C -0.047 4.047 17 C -0.571 4.571 18 H 0.046 0.954 19 C -0.195 4.195 20 N -0.595 5.595 21 Si 0.776 3.224 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.166 1.166 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.118 0.882 28 H 0.224 0.776 29 H 0.178 0.822 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.797 22.359 6.559 25.277 hybrid contribution 0.797 -1.112 -1.179 1.806 sum 10.594 21.247 5.380 24.343 Atomic orbital electron populations 1.22086 0.73261 1.05311 1.04402 1.48749 1.07408 1.03227 1.56857 1.77303 1.02889 1.09092 1.26647 1.24314 0.95444 0.95725 0.98860 1.21494 0.96599 0.95139 1.17612 1.21164 0.91670 0.90259 1.00664 1.20946 1.03119 0.88496 0.98647 1.22333 0.95880 0.89962 0.94085 0.90482 1.22861 0.95628 0.98277 0.99649 1.22735 0.99888 0.94945 0.98548 1.23082 0.92278 0.95898 0.97794 1.63794 1.38075 1.01831 1.21979 1.22364 0.99659 0.95763 0.89427 1.21355 0.99889 0.94748 0.97037 1.19485 0.95926 0.94164 0.95090 1.21530 1.40755 1.01324 0.93465 0.95400 1.26071 0.94218 0.95350 1.03861 1.70080 1.44485 1.15191 1.29765 0.85622 0.78280 0.80390 0.78139 1.19132 1.21142 1.16599 0.89800 0.88861 0.88212 0.77629 0.82248 0.89593 0.88728 0.90407 0.90306 0.90723 0.89405 0.91266 0.93743 0.90315 0.93688 0.93360 0.93753 0.95990 0.96332 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.39 11.33 127.77 1.45 2.84 16 2 N -0.38 -8.16 4.01 -356.03 -1.43 -9.59 16 3 N -0.34 -8.07 12.58 -57.02 -0.72 -8.79 16 4 C 0.04 0.80 12.03 85.23 1.03 1.82 16 5 C -0.28 -5.25 9.96 21.99 0.22 -5.03 16 6 C 0.09 1.84 5.90 41.40 0.24 2.09 16 7 C -0.07 -1.39 3.60 29.85 0.11 -1.28 16 8 C 0.09 1.74 3.44 45.26 0.16 1.90 16 9 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 10 C -0.13 -2.15 5.57 31.86 0.18 -1.97 16 11 C -0.12 -2.22 7.08 32.07 0.23 -1.99 16 12 C 0.04 0.89 5.29 86.77 0.46 1.35 16 13 N -0.53 -13.56 5.27 -860.50 -4.53 -18.09 16 14 C 0.06 1.59 3.72 86.30 0.32 1.91 16 15 C -0.09 -3.53 5.04 30.60 0.15 -3.37 16 16 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 17 C -0.53 -30.93 9.66 25.60 0.25 -30.69 16 18 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 19 C 0.00 0.08 5.47 84.66 0.46 0.54 16 20 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 21 Si 0.95 43.88 27.47 68.60 1.88 45.76 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.10 1.31 6.85 -2.39 -0.02 1.30 16 28 H 0.21 2.53 8.06 -2.91 -0.02 2.50 16 29 H 0.16 2.38 7.80 -2.91 -0.02 2.36 16 30 H 0.09 1.66 5.14 -2.39 -0.01 1.64 16 31 H 0.09 1.81 6.85 -2.39 -0.02 1.80 16 32 H 0.08 1.24 7.35 -2.39 -0.02 1.22 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 37 H 0.04 1.13 7.42 -2.39 -0.02 1.11 16 38 H 0.08 2.14 6.86 -2.39 -0.02 2.12 16 39 H 0.05 1.21 6.40 -2.39 -0.02 1.20 16 40 H 0.05 1.87 6.69 -2.39 -0.02 1.85 16 41 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 43 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 44 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -70.62 341.77 1.78 -68.85 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.91 Total: 14.14 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 5.37 Total: -32.17 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -6.38 Total: -96.58 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.76 kcal Total: -70.62 1.78 -68.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177008099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.763 kcal (2) G-P(sol) polarization free energy of solvation -70.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds