Wall clock time and date at job start Mon Mar 30 2020 01:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47444 * 2 1 4 4 C 1.52994 * 109.47510 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47151 * 179.68892 * 4 3 2 6 6 C 1.46895 * 111.00557 * 297.91122 * 5 4 3 7 7 C 1.50701 * 109.46914 * 293.09951 * 6 5 4 8 8 H 1.08002 * 120.00521 * 354.96880 * 7 6 5 9 9 C 1.37885 * 120.00250 * 174.97789 * 7 6 5 10 10 N 1.31520 * 119.99443 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00216 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47350 * 89.99812 * 11 9 7 13 13 H 1.48501 * 109.47106 * 209.99626 * 11 9 7 14 14 H 1.48504 * 109.47187 * 329.99277 * 11 9 7 15 15 C 1.46898 * 111.00049 * 61.86674 * 5 4 3 16 16 C 1.50700 * 109.47384 * 66.04363 * 15 5 4 17 17 C 1.38619 * 120.45187 * 94.99710 * 16 15 5 18 18 C 1.38572 * 118.40478 * 180.29702 * 17 16 15 19 19 N 1.32355 * 119.10145 * 359.44949 * 18 17 16 20 20 C 1.31781 * 120.81696 * 0.56831 * 19 18 17 21 21 C 1.50701 * 119.11724 * 179.72829 * 20 19 18 22 22 C 1.53006 * 109.46799 * 269.97292 * 21 20 19 23 23 N 1.31801 * 121.75751 * 359.70425 * 20 19 18 24 24 H 1.08996 * 109.47236 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46919 * 299.99557 * 1 2 3 26 26 H 1.08999 * 109.47597 * 59.99372 * 1 2 3 27 27 H 1.09006 * 109.46919 * 240.00443 * 2 1 3 28 28 H 1.08999 * 109.47597 * 120.00628 * 2 1 3 29 29 H 1.09001 * 109.46813 * 59.99845 * 3 2 1 30 30 H 1.09008 * 109.47076 * 300.00814 * 3 2 1 31 31 H 1.09001 * 109.47019 * 59.68827 * 4 3 2 32 32 H 1.09004 * 109.47092 * 299.68958 * 4 3 2 33 33 H 1.09002 * 109.47030 * 53.09375 * 6 5 4 34 34 H 1.08993 * 109.47441 * 173.09577 * 6 5 4 35 35 H 0.96997 * 119.99747 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.46920 * 306.04403 * 15 5 4 37 37 H 1.09003 * 109.47230 * 186.04284 * 15 5 4 38 38 H 1.08004 * 120.79476 * 0.03018 * 17 16 15 39 39 H 1.08004 * 120.45205 * 179.72791 * 18 17 16 40 40 H 1.08989 * 109.47749 * 29.97380 * 21 20 19 41 41 H 1.09002 * 109.46894 * 149.97826 * 21 20 19 42 42 H 1.09002 * 109.46961 * 60.00575 * 22 21 20 43 43 H 1.09001 * 109.46800 * 180.02562 * 22 21 20 44 44 H 1.09002 * 109.47583 * 300.00176 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8274 -0.0082 6 6 3.6294 3.5314 -1.2235 7 6 4.3092 2.9236 -2.4233 8 1 5.0530 2.1521 -2.2894 9 6 3.9817 3.3525 -3.6922 10 7 3.0757 4.2918 -3.8553 11 14 4.8238 2.5986 -5.1794 12 1 4.0461 1.4224 -5.6452 13 1 4.8992 3.6051 -6.2687 14 1 6.1956 2.1690 -4.8066 15 6 3.6260 3.5457 1.1976 16 6 4.2861 2.9386 2.4087 17 6 5.4587 3.4780 2.9141 18 6 6.0329 2.8822 4.0257 19 7 5.4406 1.8318 4.5711 20 6 4.3258 1.3460 4.0632 21 6 3.6871 0.1447 4.7113 22 6 4.2396 -1.1322 4.0746 23 7 3.7544 1.8830 3.0038 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9330 0.9240 -0.8881 32 1 3.9337 0.9334 0.8919 33 1 2.5488 3.4400 -1.3331 34 1 3.8991 4.5848 -1.1480 35 1 2.8450 4.5933 -4.7479 36 1 2.5433 3.4683 1.2969 37 1 3.9094 4.5951 1.1171 38 1 5.9163 4.3392 2.4499 39 1 6.9489 3.2726 4.4442 40 1 3.9111 0.1451 5.7779 41 1 2.6075 0.1850 4.5667 42 1 5.3193 -1.1725 4.2191 43 1 3.7773 -2.0011 4.5430 44 1 4.0156 -1.1328 3.0078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207086307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:24 Heat of formation + Delta-G solvation = 31.142429 kcal Electronic energy + Delta-G solvation = -22120.671945 eV Core-core repulsion = 19072.529886 eV Total energy + Delta-G solvation = -3048.142059 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95410 -37.61764 -34.54149 -33.91437 -33.49573 -32.31658 -30.70869 -28.33684 -27.83058 -25.28337 -24.91665 -23.44366 -22.72638 -21.39654 -21.01692 -19.31534 -17.47923 -16.38389 -15.95597 -15.46095 -15.18367 -14.88128 -14.63769 -14.44407 -14.01557 -13.81108 -13.68019 -13.53728 -12.74682 -12.42825 -12.33729 -12.15555 -12.08830 -11.73664 -11.30566 -11.14328 -11.11714 -10.91440 -10.80209 -10.67986 -10.59404 -10.53708 -10.44988 -10.23979 -9.93259 -9.69855 -9.30913 -9.18479 -8.95958 -8.44171 -7.22243 -6.04166 -4.04868 1.09852 1.25780 3.30827 3.37302 3.41491 3.84657 4.01744 4.23747 4.42516 4.68517 5.05377 5.13446 5.17230 5.27808 5.28866 5.31922 5.36218 5.41727 5.44635 5.63099 5.66973 5.77077 5.79396 5.89791 5.94400 6.05182 6.14395 6.16458 6.21675 6.25420 6.34333 6.38151 6.56286 6.59424 6.66528 6.82727 7.04272 7.21525 7.27962 7.41797 7.78110 8.04072 8.14898 8.30668 8.50286 9.02678 9.59149 11.06458 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.005147 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.333858 B = 5438.744628 C = 6339.514581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.150 4.150 4 C 0.068 3.932 5 N -0.528 5.528 6 C 0.190 3.810 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.091 3.909 16 C 0.203 3.797 17 C -0.217 4.217 18 C 0.143 3.857 19 N -0.529 5.529 20 C 0.313 3.687 21 C -0.052 4.052 22 C -0.143 4.143 23 N -0.507 5.507 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.007 0.993 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.147 0.853 39 H 0.164 0.836 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.077 -5.626 14.991 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.189 4.189 4 C -0.060 4.060 5 N -0.252 5.252 6 C 0.065 3.935 7 C -0.542 4.542 8 H 0.080 0.920 9 C -0.144 4.144 10 N -0.538 5.538 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.037 4.037 16 C 0.056 3.944 17 C -0.239 4.239 18 C -0.023 4.023 19 N -0.244 5.244 20 C 0.045 3.955 21 C -0.091 4.091 22 C -0.201 4.201 23 N -0.221 5.221 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.024 0.976 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.164 0.836 39 H 0.181 0.819 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.095 -6.281 15.256 16.499 hybrid contribution 0.024 0.593 -1.370 1.493 sum 0.119 -5.687 13.886 15.006 Atomic orbital electron populations 1.21753 0.96697 1.00614 1.01529 1.21371 0.95067 0.97608 1.01187 1.22145 0.98468 0.96397 1.01922 1.22025 0.92098 0.90656 1.01232 1.62425 1.59034 1.02344 1.01382 1.19815 0.95025 0.93672 0.84968 1.21099 1.22028 1.21161 0.89914 0.92008 1.24953 0.95288 0.95229 0.98966 1.69952 1.32083 1.29228 1.22537 0.86537 0.79991 0.78831 0.82313 1.20745 1.21284 1.19828 1.21085 0.97600 0.97532 0.87527 1.21843 0.90557 0.88723 0.93289 1.22760 0.98122 1.03984 0.99041 1.23124 0.97814 0.90011 0.91323 1.68170 1.10707 1.12641 1.32899 1.23140 0.88375 0.95095 0.88911 1.20282 1.00064 0.89424 0.99324 1.21678 1.01234 0.95762 1.01442 1.68156 1.34516 1.10352 1.09123 0.93540 0.93229 0.92875 0.92427 0.92693 0.92532 0.91073 0.90546 0.92525 0.97572 0.95672 0.92954 0.92870 0.89539 0.83559 0.81900 0.89695 0.89460 0.92489 0.91745 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.11 -1.79 5.93 -26.73 -0.16 -1.95 16 3 C -0.15 -2.76 4.56 -26.73 -0.12 -2.88 16 4 C 0.07 1.35 4.90 -3.83 -0.02 1.33 16 5 N -0.53 -11.10 4.69 -237.53 -1.11 -12.21 16 6 C 0.19 4.74 4.53 -4.98 -0.02 4.71 16 7 C -0.50 -13.79 8.39 -34.44 -0.29 -14.08 16 8 H 0.06 1.71 7.37 -52.49 -0.39 1.32 16 9 C 0.06 1.58 5.46 -17.81 -0.10 1.48 16 10 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 11 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.09 1.62 5.11 -4.98 -0.03 1.59 16 16 C 0.20 3.29 5.72 -82.24 -0.47 2.82 16 17 C -0.22 -3.02 9.84 -39.32 -0.39 -3.40 16 18 C 0.14 1.82 11.30 -17.20 -0.19 1.62 16 19 N -0.53 -7.57 10.33 -10.73 -0.11 -7.69 16 20 C 0.31 4.55 6.90 -157.20 -1.08 3.47 16 21 C -0.05 -0.59 6.37 -27.88 -0.18 -0.76 16 22 C -0.14 -1.51 9.89 37.16 0.37 -1.14 16 23 N -0.51 -8.15 8.85 -6.99 -0.06 -8.21 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.02 6.33 -51.93 -0.33 0.69 16 30 H 0.07 1.51 6.29 -51.92 -0.33 1.18 16 31 H 0.08 1.67 6.97 -51.93 -0.36 1.31 16 32 H 0.06 1.08 6.26 -51.93 -0.32 0.76 16 33 H 0.01 0.17 6.02 -51.93 -0.31 -0.14 16 34 H 0.03 0.66 7.91 -51.93 -0.41 0.25 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.05 0.96 6.06 -51.93 -0.31 0.64 16 37 H 0.09 1.44 7.84 -51.93 -0.41 1.03 16 38 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 40 H 0.08 0.84 8.14 -51.94 -0.42 0.42 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -29.94 353.74 -9.93 -39.87 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.38 Total: 0.71 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.31 Total: -8.88 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.55 Total: -53.47 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.94 -9.93 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207086307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.015 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds