Wall clock time and date at job start Mon Mar 30 2020 01:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47444 * 2 1 4 4 C 1.52994 * 109.47510 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47151 * 179.68892 * 4 3 2 6 6 C 1.46895 * 111.00557 * 297.91122 * 5 4 3 7 7 C 1.50701 * 109.46914 * 293.09951 * 6 5 4 8 8 H 1.08002 * 120.00521 * 354.96880 * 7 6 5 9 9 C 1.37885 * 120.00250 * 174.97789 * 7 6 5 10 10 N 1.31520 * 119.99443 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00216 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47350 * 89.99812 * 11 9 7 13 13 H 1.48501 * 109.47106 * 209.99626 * 11 9 7 14 14 H 1.48504 * 109.47187 * 329.99277 * 11 9 7 15 15 C 1.46898 * 111.00049 * 61.86674 * 5 4 3 16 16 C 1.50700 * 109.47384 * 66.04363 * 15 5 4 17 17 C 1.38619 * 120.45187 * 94.99710 * 16 15 5 18 18 C 1.38572 * 118.40478 * 180.29702 * 17 16 15 19 19 N 1.32355 * 119.10145 * 359.44949 * 18 17 16 20 20 C 1.31781 * 120.81696 * 0.56831 * 19 18 17 21 21 C 1.50701 * 119.11724 * 179.72829 * 20 19 18 22 22 C 1.53006 * 109.46799 * 269.97292 * 21 20 19 23 23 N 1.31801 * 121.75751 * 359.70425 * 20 19 18 24 24 H 1.08996 * 109.47236 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46919 * 299.99557 * 1 2 3 26 26 H 1.08999 * 109.47597 * 59.99372 * 1 2 3 27 27 H 1.09006 * 109.46919 * 240.00443 * 2 1 3 28 28 H 1.08999 * 109.47597 * 120.00628 * 2 1 3 29 29 H 1.09001 * 109.46813 * 59.99845 * 3 2 1 30 30 H 1.09008 * 109.47076 * 300.00814 * 3 2 1 31 31 H 1.09001 * 109.47019 * 59.68827 * 4 3 2 32 32 H 1.09004 * 109.47092 * 299.68958 * 4 3 2 33 33 H 1.09002 * 109.47030 * 53.09375 * 6 5 4 34 34 H 1.08993 * 109.47441 * 173.09577 * 6 5 4 35 35 H 0.96997 * 119.99747 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.46920 * 306.04403 * 15 5 4 37 37 H 1.09003 * 109.47230 * 186.04284 * 15 5 4 38 38 H 1.08004 * 120.79476 * 0.03018 * 17 16 15 39 39 H 1.08004 * 120.45205 * 179.72791 * 18 17 16 40 40 H 1.08989 * 109.47749 * 29.97380 * 21 20 19 41 41 H 1.09002 * 109.46894 * 149.97826 * 21 20 19 42 42 H 1.09002 * 109.46961 * 60.00575 * 22 21 20 43 43 H 1.09001 * 109.46800 * 180.02562 * 22 21 20 44 44 H 1.09002 * 109.47583 * 300.00176 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8274 -0.0082 6 6 3.6294 3.5314 -1.2235 7 6 4.3092 2.9236 -2.4233 8 1 5.0530 2.1521 -2.2894 9 6 3.9817 3.3525 -3.6922 10 7 3.0757 4.2918 -3.8553 11 14 4.8238 2.5986 -5.1794 12 1 4.0461 1.4224 -5.6452 13 1 4.8992 3.6051 -6.2687 14 1 6.1956 2.1690 -4.8066 15 6 3.6260 3.5457 1.1976 16 6 4.2861 2.9386 2.4087 17 6 5.4587 3.4780 2.9141 18 6 6.0329 2.8822 4.0257 19 7 5.4406 1.8318 4.5711 20 6 4.3258 1.3460 4.0632 21 6 3.6871 0.1447 4.7113 22 6 4.2396 -1.1322 4.0746 23 7 3.7544 1.8830 3.0038 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9330 0.9240 -0.8881 32 1 3.9337 0.9334 0.8919 33 1 2.5488 3.4400 -1.3331 34 1 3.8991 4.5848 -1.1480 35 1 2.8450 4.5933 -4.7479 36 1 2.5433 3.4683 1.2969 37 1 3.9094 4.5951 1.1171 38 1 5.9163 4.3392 2.4499 39 1 6.9489 3.2726 4.4442 40 1 3.9111 0.1451 5.7779 41 1 2.6075 0.1850 4.5667 42 1 5.3193 -1.1725 4.2191 43 1 3.7773 -2.0011 4.5430 44 1 4.0156 -1.1328 3.0078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207086307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:23 Heat of formation + Delta-G solvation = 13.677624 kcal Electronic energy + Delta-G solvation = -22121.429276 eV Core-core repulsion = 19072.529886 eV Total energy + Delta-G solvation = -3048.899390 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.07717 -39.22409 -35.67377 -35.24517 -34.93818 -34.07722 -31.78471 -29.87350 -29.50867 -26.90496 -25.90091 -25.09430 -24.03998 -22.70110 -22.28576 -20.92679 -18.61027 -18.37707 -17.22031 -16.98745 -16.58070 -16.27625 -16.14983 -15.80047 -15.35304 -15.08502 -14.91207 -14.60672 -14.22834 -13.93189 -13.85402 -13.53003 -13.26610 -13.02956 -12.80466 -12.68540 -12.59377 -12.51455 -12.27309 -12.10097 -11.96114 -11.91418 -11.72402 -11.65738 -11.55065 -11.28476 -11.24712 -10.58850 -10.32174 -10.15072 -8.95907 -8.18620 -6.27068 -0.01305 0.14356 1.40654 1.40950 1.52394 2.40144 2.71810 2.96923 3.14488 3.17029 3.49365 3.59191 4.04024 4.05046 4.07313 4.20695 4.30398 4.32680 4.35310 4.41467 4.45612 4.50682 4.58644 4.79870 4.83861 4.86290 4.90669 4.91907 4.99364 5.01648 5.13196 5.18138 5.21765 5.24983 5.30943 5.38494 5.46875 5.52768 5.55389 5.68208 6.05998 6.11014 6.30744 6.58017 6.87713 7.19254 7.41653 8.91815 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.005147 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.333858 B = 5438.744628 C = 6339.514581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.137 4.137 4 C 0.078 3.922 5 N -0.534 5.534 6 C 0.207 3.793 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.008 3.992 10 N -0.931 5.931 11 Si 0.961 3.039 12 H -0.275 1.275 13 H -0.281 1.281 14 H -0.268 1.268 15 C 0.096 3.904 16 C 0.181 3.819 17 C -0.219 4.219 18 C 0.149 3.851 19 N -0.537 5.537 20 C 0.302 3.698 21 C -0.051 4.051 22 C -0.137 4.137 23 N -0.525 5.525 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.067 0.933 33 H -0.017 1.017 34 H 0.006 0.994 35 H 0.264 0.736 36 H 0.046 0.954 37 H 0.093 0.907 38 H 0.163 0.837 39 H 0.203 0.797 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.050 0.950 43 H 0.089 0.911 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.893 -6.848 16.327 17.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.176 4.176 4 C -0.051 4.051 5 N -0.258 5.258 6 C 0.081 3.919 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.190 4.190 10 N -0.571 5.571 11 Si 0.786 3.214 12 H -0.201 1.201 13 H -0.207 1.207 14 H -0.192 1.192 15 C -0.032 4.032 16 C 0.035 3.965 17 C -0.241 4.241 18 C -0.016 4.016 19 N -0.251 5.251 20 C 0.034 3.966 21 C -0.090 4.090 22 C -0.195 4.195 23 N -0.240 5.240 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.001 0.999 34 H 0.024 0.976 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.111 0.889 38 H 0.181 0.819 39 H 0.220 0.780 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.908 -7.513 16.608 18.251 hybrid contribution -0.202 0.991 -1.679 1.960 sum 0.707 -6.522 14.930 16.308 Atomic orbital electron populations 1.21714 0.95078 1.02088 1.01280 1.21346 0.96492 0.95438 1.01561 1.21976 0.97327 0.98094 1.00190 1.21905 0.92996 0.89803 1.00356 1.62280 1.59371 1.02824 1.01302 1.19440 0.93312 0.92758 0.86406 1.21354 1.21994 1.21039 0.91150 0.92655 1.25767 0.95843 0.95570 1.01858 1.70066 1.33333 1.30436 1.23308 0.85510 0.79073 0.78132 0.78688 1.20076 1.20656 1.19207 1.21022 0.97463 0.97757 0.86977 1.21616 0.91810 0.89798 0.93289 1.22966 0.97249 1.04448 0.99437 1.23770 0.98486 0.88991 0.90364 1.68281 1.10691 1.13145 1.33014 1.23738 0.88582 0.95704 0.88529 1.20412 1.00160 0.88404 1.00012 1.21639 1.01021 0.96416 1.00433 1.68103 1.35228 1.10658 1.10026 0.91185 0.92536 0.94096 0.93077 0.91202 0.92245 0.94597 0.93021 0.91454 0.99892 0.97642 0.92764 0.93560 0.88920 0.81943 0.77985 0.88056 0.88979 0.93087 0.89207 0.93865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.15 16 2 C -0.11 -3.41 5.93 30.59 0.18 -3.23 16 3 C -0.14 -5.17 4.56 30.59 0.14 -5.03 16 4 C 0.08 3.15 4.90 86.30 0.42 3.58 16 5 N -0.53 -23.11 4.69 -905.41 -4.24 -27.35 16 6 C 0.21 10.76 4.53 85.56 0.39 11.15 16 7 C -0.52 -29.10 8.39 25.60 0.21 -28.88 16 8 H 0.06 3.12 7.37 -2.91 -0.02 3.10 16 9 C 0.01 0.44 5.46 84.66 0.46 0.91 16 10 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 11 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 C 0.10 3.48 5.11 85.56 0.44 3.92 16 16 C 0.18 5.77 5.72 42.58 0.24 6.02 16 17 C -0.22 -5.74 9.84 22.44 0.22 -5.52 16 18 C 0.15 3.42 11.30 84.69 0.96 4.38 16 19 N -0.54 -14.14 10.33 -187.85 -1.94 -16.09 16 20 C 0.30 8.31 6.90 138.75 0.96 9.27 16 21 C -0.05 -1.05 6.37 29.85 0.19 -0.86 16 22 C -0.14 -2.61 9.89 71.98 0.71 -1.90 16 23 N -0.52 -16.47 8.85 -176.02 -1.56 -18.02 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 29 H 0.06 2.19 6.33 -2.39 -0.02 2.17 16 30 H 0.04 1.60 6.29 -2.38 -0.01 1.58 16 31 H 0.05 2.33 6.97 -2.39 -0.02 2.31 16 32 H 0.07 2.60 6.26 -2.38 -0.01 2.58 16 33 H -0.02 -0.93 6.02 -2.39 -0.01 -0.95 16 34 H 0.01 0.30 7.91 -2.39 -0.02 0.29 16 35 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.05 1.72 6.06 -2.39 -0.01 1.71 16 37 H 0.09 3.16 7.84 -2.39 -0.02 3.14 16 38 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 39 H 0.20 2.89 8.06 -2.91 -0.02 2.86 16 40 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -65.34 353.74 1.77 -63.58 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.96 Total: 15.88 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 6.24 Total: -9.36 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -7.46 Total: -116.47 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -65.34 1.77 -63.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207086307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.253 kcal (2) G-P(sol) polarization free energy of solvation -65.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds