Wall clock time and date at job start Mon Mar 30 2020 02:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50703 * 120.00561 * 2 1 4 4 C 1.31010 * 119.99671 * 180.02562 * 2 1 3 5 5 C 1.50698 * 119.99982 * 5.33344 * 4 2 1 6 6 C 1.53000 * 109.47182 * 124.96301 * 5 4 2 7 7 C 1.50693 * 109.47670 * 180.02562 * 6 5 4 8 8 C 1.29443 * 117.96017 * 95.01979 * 7 6 5 9 9 C 1.50072 * 124.07095 * 179.51453 * 8 7 6 10 10 C 1.53023 * 110.15247 * 17.12950 * 9 8 7 11 11 H 1.08999 * 109.81527 * 70.35261 * 10 9 8 12 12 C 1.52991 * 109.64225 * 190.88038 * 10 9 8 13 13 N 1.46498 * 109.47484 * 293.94186 * 12 10 9 14 14 C 1.46497 * 120.00150 * 270.00401 * 13 12 10 15 15 C 1.36940 * 119.99612 * 90.00166 * 13 12 10 16 16 H 1.08000 * 120.00059 * 340.53127 * 15 13 12 17 17 C 1.38814 * 119.99892 * 160.53269 * 15 13 12 18 18 N 1.31621 * 119.99817 * 347.62110 * 17 15 13 19 19 Si 1.86802 * 120.00121 * 167.34405 * 17 15 13 20 20 H 1.48502 * 109.46694 * 59.99710 * 19 17 15 21 21 H 1.48492 * 109.46842 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47048 * 299.99967 * 19 17 15 23 23 C 1.53398 * 108.43487 * 310.56825 * 10 9 8 24 24 C 1.50067 * 117.96295 * 275.00621 * 7 6 5 25 25 H 1.08998 * 109.47344 * 237.41549 * 1 2 3 26 26 H 1.08998 * 109.46756 * 357.40677 * 1 2 3 27 27 H 1.08995 * 109.47477 * 117.40289 * 1 2 3 28 28 H 1.09000 * 109.46843 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46691 * 300.00093 * 3 2 1 30 30 H 1.08997 * 109.46344 * 60.00220 * 3 2 1 31 31 H 1.07996 * 119.99559 * 185.33733 * 4 2 1 32 32 H 1.09004 * 109.47127 * 4.96596 * 5 4 2 33 33 H 1.08996 * 109.47443 * 244.96393 * 5 4 2 34 34 H 1.09000 * 109.47103 * 59.99675 * 6 5 4 35 35 H 1.09006 * 109.47014 * 300.00353 * 6 5 4 36 36 H 1.07996 * 117.96728 * 359.53640 * 8 7 6 37 37 H 1.09005 * 109.35421 * 256.92109 * 9 8 7 38 38 H 1.09003 * 109.35874 * 137.34466 * 9 8 7 39 39 H 1.09012 * 109.47156 * 173.94089 * 12 10 9 40 40 H 1.09000 * 109.47309 * 53.94691 * 12 10 9 41 41 H 1.09003 * 109.47098 * 264.83792 * 14 13 12 42 42 H 1.08996 * 109.47253 * 24.83959 * 14 13 12 43 43 H 1.08999 * 109.47002 * 144.84503 * 14 13 12 44 44 H 0.96996 * 119.99941 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.63667 * 187.11818 * 23 10 9 46 46 H 1.08998 * 109.64035 * 307.74602 * 23 10 9 47 47 H 1.08997 * 109.35997 * 76.93891 * 24 7 6 48 48 H 1.09001 * 109.35544 * 317.35624 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1620 -1.1346 -0.0005 5 6 1.4133 -2.4368 -0.1224 6 6 1.9694 -3.2363 -1.3024 7 6 1.2204 -4.5381 -1.4248 8 6 0.2212 -4.5886 -2.2462 9 6 -0.6115 -5.8145 -2.4829 10 6 -0.4014 -6.8214 -1.3500 11 1 -0.8585 -6.4474 -0.4338 12 6 -1.0330 -8.1620 -1.7298 13 7 -2.4875 -8.0097 -1.8159 14 6 -3.3189 -8.2324 -0.6304 15 6 -3.0699 -7.6591 -3.0047 16 1 -2.4781 -7.1951 -3.7798 17 6 -4.4210 -7.8999 -3.2133 18 7 -5.0870 -8.6752 -2.3840 19 14 -5.2957 -7.1176 -4.6667 20 1 -4.6527 -7.5624 -5.9292 21 1 -6.7223 -7.5299 -4.6661 22 1 -5.2072 -5.6391 -4.5603 23 6 1.1067 -7.0038 -1.1365 24 6 1.6795 -5.6955 -0.5871 25 1 -0.3634 -0.5534 0.8659 26 1 -0.3633 1.0266 0.0465 27 1 -0.3634 -0.4729 -0.9123 28 1 3.3322 1.1057 -0.0005 29 1 1.9973 1.8766 -0.8900 30 1 1.9973 1.8765 0.8900 31 1 3.2384 -1.1367 0.0865 32 1 0.3552 -2.2335 -0.2877 33 1 1.5336 -3.0124 0.7953 34 1 3.0274 -3.4395 -1.1372 35 1 1.8491 -2.6606 -2.2202 36 1 -0.0286 -3.6929 -2.7954 37 1 -0.3220 -6.2704 -3.4298 38 1 -1.6638 -5.5336 -2.5264 39 1 -0.7899 -8.9061 -0.9711 40 1 -0.6439 -8.4867 -2.6948 41 1 -3.6897 -9.2575 -0.6340 42 1 -2.7240 -8.0644 0.2673 43 1 -4.1616 -7.5413 -0.6426 44 1 -6.0309 -8.8438 -2.5299 45 1 1.2808 -7.8086 -0.4223 46 1 1.5849 -7.2429 -2.0864 47 1 1.3406 -5.5555 0.4393 48 1 2.7683 -5.7432 -0.6026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207938984.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:18 Heat of formation + Delta-G solvation = 4.384439 kcal Electronic energy + Delta-G solvation = -21717.807333 eV Core-core repulsion = 18772.045304 eV Total energy + Delta-G solvation = -2945.762029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.08522 -38.13383 -37.15515 -34.78390 -33.00480 -31.61183 -31.00417 -28.71577 -28.06262 -27.87546 -26.04705 -24.27290 -23.33156 -22.57194 -21.25615 -18.90126 -18.74688 -18.18528 -16.89091 -16.30916 -16.14687 -15.62500 -15.42122 -15.29131 -14.91982 -14.76508 -14.58692 -14.24928 -14.17651 -13.62755 -13.56860 -13.25357 -13.22087 -12.99606 -12.83189 -12.74895 -12.68335 -12.62699 -12.52125 -12.32636 -12.18683 -11.96207 -11.92461 -11.76592 -11.50279 -11.39009 -11.07575 -10.86569 -10.55204 -9.71560 -9.37523 -8.72674 -7.77530 -5.21861 1.24579 1.45493 1.47855 1.50018 1.54091 2.53354 3.34985 3.71098 3.78911 3.90012 4.02205 4.12568 4.16320 4.29583 4.41131 4.47857 4.50995 4.57942 4.61583 4.67628 4.72794 4.75144 4.81059 4.87445 4.91240 4.92404 4.94231 4.97328 5.03067 5.09455 5.11588 5.12205 5.17358 5.22598 5.24006 5.34022 5.37374 5.40839 5.58621 5.65665 5.69225 5.75123 5.81847 5.91841 6.08230 6.24853 6.36838 7.20335 7.94211 8.37276 9.26342 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.003666 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.719946 B = 7635.048108 C = 8503.528595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.146 4.146 3 C -0.115 4.115 4 C -0.169 4.169 5 C -0.086 4.086 6 C -0.071 4.071 7 C -0.122 4.122 8 C -0.164 4.164 9 C -0.069 4.069 10 C -0.093 4.093 11 H 0.048 0.952 12 C 0.153 3.847 13 N -0.620 5.620 14 C 0.181 3.819 15 C -0.244 4.244 16 H 0.074 0.926 17 C -0.063 4.063 18 N -0.945 5.945 19 Si 0.962 3.038 20 H -0.276 1.276 21 H -0.296 1.296 22 H -0.281 1.281 23 C -0.107 4.107 24 C -0.075 4.075 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.040 0.960 41 H 0.001 0.999 42 H 0.024 0.976 43 H 0.017 0.983 44 H 0.245 0.755 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.627 15.037 5.636 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.146 4.146 3 C -0.171 4.171 4 C -0.187 4.187 5 C -0.123 4.123 6 C -0.108 4.108 7 C -0.122 4.122 8 C -0.182 4.182 9 C -0.106 4.106 10 C -0.113 4.113 11 H 0.067 0.933 12 C 0.027 3.973 13 N -0.343 5.343 14 C 0.036 3.964 15 C -0.374 4.374 16 H 0.092 0.908 17 C -0.257 4.257 18 N -0.594 5.594 19 Si 0.791 3.209 20 H -0.201 1.201 21 H -0.222 1.222 22 H -0.207 1.207 23 C -0.145 4.145 24 C -0.112 4.112 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.019 0.981 42 H 0.043 0.957 43 H 0.035 0.965 44 H 0.054 0.946 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 17.460 14.992 5.632 23.692 hybrid contribution -1.262 0.113 -0.843 1.522 sum 16.197 15.105 4.789 22.659 Atomic orbital electron populations 1.20830 0.92706 1.02508 1.01686 1.21868 0.95957 0.95881 1.00942 1.20859 0.99533 0.94353 1.02397 1.22776 0.99846 0.93490 1.02612 1.20649 0.99165 0.94166 0.98336 1.20615 0.99595 0.92332 0.98289 1.20997 0.96754 0.96657 0.97810 1.22012 0.97294 0.98185 1.00669 1.20254 0.98366 0.93981 0.98035 1.21649 0.95752 0.96512 0.97433 0.93347 1.20990 0.82707 0.94785 0.98789 1.44158 1.01912 1.81147 1.07082 1.20492 0.92236 0.97747 0.85958 1.19524 0.92990 1.31044 0.93833 0.90785 1.25711 0.98818 1.00020 1.01105 1.70252 1.08439 1.40404 1.40286 0.85396 0.77278 0.78334 0.79860 1.20142 1.22238 1.20714 1.21585 0.93896 0.97728 1.01333 1.20375 1.00941 0.91650 0.98243 0.91937 0.91339 0.92276 0.91515 0.91216 0.91216 0.86406 0.92301 0.91185 0.90087 0.92103 0.88673 0.92638 0.93341 0.93592 0.94164 0.98109 0.95726 0.96465 0.94582 0.90807 0.91947 0.90956 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 8.56 71.24 0.61 -1.53 16 2 C -0.15 -2.53 6.05 -16.50 -0.10 -2.63 16 3 C -0.11 -1.50 10.04 71.24 0.72 -0.79 16 4 C -0.17 -2.98 9.12 25.64 0.23 -2.75 16 5 C -0.09 -1.70 5.42 29.85 0.16 -1.54 16 6 C -0.07 -1.43 5.20 29.85 0.16 -1.27 16 7 C -0.12 -3.03 5.09 -15.10 -0.08 -3.11 16 8 C -0.16 -4.89 9.37 27.04 0.25 -4.64 16 9 C -0.07 -2.50 4.26 29.66 0.13 -2.38 16 10 C -0.09 -3.21 2.45 -10.66 -0.03 -3.24 16 11 H 0.05 1.82 8.13 -2.39 -0.02 1.80 16 12 C 0.15 6.28 5.14 86.38 0.44 6.73 16 13 N -0.62 -31.78 2.85 -726.95 -2.07 -33.86 16 14 C 0.18 9.34 8.96 127.77 1.15 10.48 16 15 C -0.24 -13.53 8.34 84.03 0.70 -12.83 16 16 H 0.07 3.97 6.99 -2.91 -0.02 3.95 16 17 C -0.06 -3.61 5.13 84.86 0.43 -3.18 16 18 N -0.95 -57.62 10.47 21.65 0.23 -57.39 16 19 Si 0.96 46.34 29.57 68.60 2.03 48.37 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 C -0.11 -2.83 5.31 30.73 0.16 -2.66 16 24 C -0.08 -1.69 5.80 29.66 0.17 -1.52 16 25 H 0.06 1.14 7.95 -2.39 -0.02 1.12 16 26 H 0.07 1.03 8.00 -2.39 -0.02 1.01 16 27 H 0.06 1.14 7.56 -2.39 -0.02 1.13 16 28 H 0.07 0.77 7.79 -2.39 -0.02 0.75 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.12 1.77 7.84 -2.91 -0.02 1.75 16 32 H 0.06 1.32 5.85 -2.39 -0.01 1.31 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.37 8.09 -2.39 -0.02 1.35 16 35 H 0.06 1.27 7.80 -2.38 -0.02 1.25 16 36 H 0.10 2.75 7.75 -2.91 -0.02 2.73 16 37 H 0.06 2.06 8.03 -2.38 -0.02 2.04 16 38 H 0.05 2.09 7.01 -2.39 -0.02 2.07 16 39 H 0.05 1.76 8.07 -2.38 -0.02 1.74 16 40 H 0.04 1.67 7.99 -2.39 -0.02 1.65 16 41 H 0.00 0.04 7.43 -2.39 -0.02 0.02 16 42 H 0.02 1.08 8.03 -2.39 -0.02 1.07 16 43 H 0.02 0.94 7.08 -2.39 -0.02 0.93 16 44 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.06 1.62 8.12 -2.39 -0.02 1.60 16 47 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.09 1.59 8.11 -2.39 -0.02 1.57 16 Total: -1.00 -63.16 371.09 6.17 -56.99 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.87 Total: 12.73 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 5.11 Total: -26.84 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -1.85 Total: -91.25 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -63.16 6.17 -56.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207938984.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.379 kcal (2) G-P(sol) polarization free energy of solvation -63.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds