Wall clock time and date at job start Mon Mar 30 2020 01:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46904 * 2 1 4 4 C 1.52998 * 109.46904 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46649 * 185.45946 * 4 3 2 6 6 C 1.36944 * 119.99787 * 277.03536 * 5 4 3 7 7 H 1.07996 * 120.00101 * 345.91077 * 6 5 4 8 8 C 1.38812 * 119.99678 * 165.90380 * 6 5 4 9 9 N 1.31622 * 120.00115 * 3.58717 * 8 6 5 10 10 Si 1.86800 * 120.00094 * 183.58864 * 8 6 5 11 11 H 1.48496 * 109.47397 * 89.99677 * 10 8 6 12 12 H 1.48493 * 109.47272 * 210.00264 * 10 8 6 13 13 H 1.48500 * 109.46799 * 329.99942 * 10 8 6 14 14 C 1.46497 * 120.00341 * 97.04261 * 5 4 3 15 15 C 1.50695 * 109.46964 * 277.23314 * 14 5 4 16 16 C 1.35319 * 126.04120 * 261.78810 * 15 14 5 17 17 N 1.34942 * 107.75083 * 179.97438 * 16 15 14 18 18 C 1.46505 * 126.03987 * 180.02562 * 17 16 15 19 19 N 1.40085 * 107.92397 * 359.97438 * 17 16 15 20 20 C 1.30832 * 108.20498 * 0.02562 * 19 17 16 21 21 C 1.50703 * 125.89861 * 180.02562 * 20 19 17 22 22 C 1.53002 * 117.50210 * 4.39555 * 21 20 19 23 23 C 1.52999 * 60.00193 * 252.50996 * 22 21 20 24 24 H 1.09001 * 109.47264 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47595 * 300.00476 * 1 2 3 26 26 H 1.09001 * 109.47246 * 60.00600 * 1 2 3 27 27 H 1.08997 * 109.47416 * 240.00248 * 2 1 3 28 28 H 1.09001 * 109.47246 * 119.99400 * 2 1 3 29 29 H 1.09003 * 109.46879 * 59.99499 * 3 2 1 30 30 H 1.09001 * 109.46679 * 299.99747 * 3 2 1 31 31 H 1.08995 * 109.47009 * 65.45908 * 4 3 2 32 32 H 1.08996 * 109.46774 * 305.45431 * 4 3 2 33 33 H 0.97003 * 120.00056 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47656 * 157.23236 * 14 5 4 35 35 H 1.09004 * 109.47136 * 37.22939 * 14 5 4 36 36 H 1.08005 * 126.12377 * 0.02562 * 16 15 14 37 37 H 1.08994 * 109.46941 * 270.02224 * 18 17 16 38 38 H 1.08992 * 109.46821 * 30.02387 * 18 17 16 39 39 H 1.08999 * 109.46785 * 150.01941 * 18 17 16 40 40 H 1.09001 * 115.54977 * 150.10929 * 21 20 19 41 41 H 1.08999 * 117.49120 * 0.02562 * 22 21 20 42 42 H 1.08993 * 117.50190 * 145.01788 * 22 21 20 43 43 H 1.08995 * 117.50166 * 252.50736 * 23 22 21 44 44 H 1.09001 * 117.51359 * 107.47751 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8176 0.1308 6 6 4.1490 3.6205 -0.9749 7 1 4.0834 3.1888 -1.9626 8 6 4.3251 4.9893 -0.8259 9 7 4.4757 5.5067 0.3750 10 14 4.3485 6.0972 -2.3297 11 1 2.9684 6.5580 -2.6266 12 1 5.2167 7.2724 -2.0653 13 1 4.8789 5.3416 -3.4929 14 6 4.4496 3.3335 1.4448 15 6 3.2237 3.8005 2.1865 16 6 2.7854 5.0777 2.2757 17 7 1.6618 5.0758 3.0229 18 6 0.8567 6.2491 3.3718 19 7 1.4005 3.7537 3.4052 20 6 2.3372 2.9904 2.9036 21 6 2.4424 1.4962 3.0690 22 6 1.3070 0.7856 3.8086 23 6 2.6700 0.9561 4.4823 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9328 1.0159 -0.9357 32 1 3.9336 0.8464 0.8362 33 1 4.5984 6.4633 0.4791 34 1 5.1373 4.1695 1.3170 35 1 4.9397 2.5437 2.0141 36 1 3.2511 5.9433 1.8281 37 1 1.2213 6.6750 4.3064 38 1 0.9353 6.9925 2.5786 39 1 -0.1855 5.9525 3.4897 40 1 2.9169 0.9642 2.2445 41 1 0.4838 1.3989 4.1751 42 1 1.0342 -0.2141 3.4705 43 1 3.2940 0.0687 4.5876 44 1 2.7440 1.6816 5.2924 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232175022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:00 Heat of formation + Delta-G solvation = 132.559671 kcal Electronic energy + Delta-G solvation = -23271.152753 eV Core-core repulsion = 20227.408476 eV Total energy + Delta-G solvation = -3043.744277 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.20609 -36.83013 -36.05296 -34.07002 -32.11195 -31.13891 -29.51669 -27.78902 -26.78059 -24.77313 -23.50809 -22.19685 -21.97904 -21.08613 -20.16669 -18.96652 -18.26885 -17.02327 -15.55057 -15.27234 -14.94069 -14.52325 -14.45009 -13.83407 -13.52235 -13.43036 -13.19485 -12.70219 -12.34444 -12.12178 -11.93032 -11.77678 -11.54840 -11.28199 -11.16358 -11.08395 -10.84987 -10.70653 -10.54383 -10.40268 -10.23694 -10.10329 -9.93870 -9.86765 -9.71039 -9.62355 -9.27870 -8.46995 -8.03933 -7.06374 -6.73413 -5.55384 -3.12240 2.94808 3.36463 3.43594 3.45041 3.47531 3.85774 4.48297 4.56359 5.13256 5.26070 5.33647 5.39924 5.47074 5.50506 5.53606 5.61973 5.71450 5.78816 5.86781 5.91711 5.98237 6.09434 6.18763 6.24364 6.39124 6.41649 6.45185 6.50999 6.52342 6.56774 6.70949 6.73890 6.86022 7.03566 7.12094 7.21857 7.38053 7.65852 7.72943 7.81380 8.07734 8.28644 8.62133 8.87955 9.34143 9.95086 10.36995 11.29050 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.008355 C = 0.006301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.892400 B = 3350.311273 C = 4442.952867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.146 4.146 4 C 0.149 3.851 5 N -0.594 5.594 6 C -0.207 4.207 7 H 0.071 0.929 8 C -0.016 4.016 9 N -0.914 5.914 10 Si 0.909 3.091 11 H -0.293 1.293 12 H -0.292 1.292 13 H -0.283 1.283 14 C 0.210 3.790 15 C -0.199 4.199 16 C 0.087 3.913 17 N -0.404 5.404 18 C 0.115 3.885 19 N -0.336 5.336 20 C 0.094 3.906 21 C -0.066 4.066 22 C -0.173 4.173 23 C -0.174 4.174 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.039 0.961 33 H 0.245 0.755 34 H 0.142 0.858 35 H 0.001 0.999 36 H 0.198 0.802 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.127 0.873 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.459 -4.680 5.072 8.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.186 4.186 4 C 0.022 3.978 5 N -0.314 5.314 6 C -0.337 4.337 7 H 0.089 0.911 8 C -0.208 4.208 9 N -0.567 5.567 10 Si 0.741 3.259 11 H -0.221 1.221 12 H -0.218 1.218 13 H -0.209 1.209 14 C 0.085 3.915 15 C -0.211 4.211 16 C -0.056 4.056 17 N -0.189 5.189 18 C -0.027 4.027 19 N -0.159 5.159 20 C -0.071 4.071 21 C -0.086 4.086 22 C -0.210 4.210 23 C -0.212 4.212 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.158 0.842 35 H 0.019 0.981 36 H 0.214 0.786 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.145 0.855 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.519 -4.316 5.763 9.072 hybrid contribution 0.225 0.762 -1.321 1.542 sum -5.294 -3.554 4.442 7.771 Atomic orbital electron populations 1.21743 0.96869 1.00290 1.01616 1.21519 0.95099 0.98620 1.00677 1.22420 0.99284 0.94251 1.02687 1.20896 0.91572 0.87341 0.97971 1.44275 1.73587 1.08821 1.04710 1.19473 1.38931 0.88621 0.86652 0.91113 1.24739 1.03083 0.96503 0.96492 1.69734 1.57785 1.10246 1.18961 0.86138 0.77219 0.80413 0.82175 1.22056 1.21819 1.20917 1.20080 0.92387 0.97845 0.81233 1.20744 1.03395 0.91255 1.05704 1.23703 0.86597 1.02430 0.92883 1.48379 1.22415 1.05229 1.42837 1.21498 0.95418 0.85132 1.00700 1.76890 1.24683 0.87881 1.26455 1.21169 0.94341 0.93453 0.98120 1.20557 1.03143 0.89141 0.95769 1.22867 0.92527 1.01105 1.04513 1.22930 0.99662 1.02610 0.96021 0.93776 0.92904 0.93309 0.93003 0.92839 0.90869 0.93035 0.94727 0.94242 0.94293 0.84166 0.98068 0.78596 0.92279 0.90442 0.90850 0.85507 0.88629 0.89226 0.88962 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -1.87 5.88 -26.73 -0.16 -2.03 16 3 C -0.15 -2.84 4.59 -26.73 -0.12 -2.96 16 4 C 0.15 3.05 5.15 -4.04 -0.02 3.03 16 5 N -0.59 -14.29 2.54 -174.62 -0.44 -14.73 16 6 C -0.21 -5.39 9.76 -15.06 -0.15 -5.53 16 7 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 8 C -0.02 -0.41 5.41 -17.43 -0.09 -0.51 16 9 N -0.91 -23.22 6.00 55.49 0.33 -22.89 16 10 Si 0.91 20.99 29.56 -169.99 -5.02 15.97 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.21 5.01 5.26 -5.20 -0.03 4.98 16 15 C -0.20 -4.58 5.38 -105.05 -0.56 -5.14 16 16 C 0.09 1.97 10.25 -17.22 -0.18 1.79 16 17 N -0.40 -8.29 4.01 -68.16 -0.27 -8.57 16 18 C 0.12 1.73 11.47 59.85 0.69 2.42 16 19 N -0.34 -7.23 12.13 33.67 0.41 -6.82 16 20 C 0.09 2.01 5.29 -82.41 -0.44 1.58 16 21 C -0.07 -1.19 4.70 -91.77 -0.43 -1.62 16 22 C -0.17 -2.66 10.14 -26.73 -0.27 -2.93 16 23 C -0.17 -2.65 10.23 -26.73 -0.27 -2.93 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.78 7.64 -51.93 -0.40 0.38 16 29 H 0.07 1.57 4.58 -51.93 -0.24 1.33 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.04 0.75 6.09 -51.93 -0.32 0.44 16 33 H 0.24 6.04 7.97 -40.82 -0.33 5.71 16 34 H 0.14 3.68 5.12 -56.04 -0.29 3.39 16 35 H 0.00 0.03 7.98 -51.93 -0.41 -0.39 16 36 H 0.20 4.53 5.42 -52.48 -0.28 4.25 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.13 2.29 3.73 -51.93 -0.19 2.10 16 41 H 0.10 1.58 7.87 -51.93 -0.41 1.17 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 340.87 15.07 5.14 5.14 Total: -1.00 -27.93 340.87 -8.67 -36.60 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.14 Total: 6.91 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -1.67 Total: -11.62 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.03 Total: -53.00 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.93 -8.67 -36.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232175022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.161 kcal (2) G-P(sol) polarization free energy of solvation -27.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds