Wall clock time and date at job start Mon Mar 30 2020 01:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46904 * 2 1 4 4 C 1.52998 * 109.46904 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46649 * 185.45946 * 4 3 2 6 6 C 1.36944 * 119.99787 * 277.03536 * 5 4 3 7 7 H 1.07996 * 120.00101 * 345.91077 * 6 5 4 8 8 C 1.38812 * 119.99678 * 165.90380 * 6 5 4 9 9 N 1.31622 * 120.00115 * 3.58717 * 8 6 5 10 10 Si 1.86800 * 120.00094 * 183.58864 * 8 6 5 11 11 H 1.48496 * 109.47397 * 89.99677 * 10 8 6 12 12 H 1.48493 * 109.47272 * 210.00264 * 10 8 6 13 13 H 1.48500 * 109.46799 * 329.99942 * 10 8 6 14 14 C 1.46497 * 120.00341 * 97.04261 * 5 4 3 15 15 C 1.50695 * 109.46964 * 277.23314 * 14 5 4 16 16 C 1.35319 * 126.04120 * 261.78810 * 15 14 5 17 17 N 1.34942 * 107.75083 * 179.97438 * 16 15 14 18 18 C 1.46505 * 126.03987 * 180.02562 * 17 16 15 19 19 N 1.40085 * 107.92397 * 359.97438 * 17 16 15 20 20 C 1.30832 * 108.20498 * 0.02562 * 19 17 16 21 21 C 1.50703 * 125.89861 * 180.02562 * 20 19 17 22 22 C 1.53002 * 117.50210 * 4.39555 * 21 20 19 23 23 C 1.52999 * 60.00193 * 252.50996 * 22 21 20 24 24 H 1.09001 * 109.47264 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47595 * 300.00476 * 1 2 3 26 26 H 1.09001 * 109.47246 * 60.00600 * 1 2 3 27 27 H 1.08997 * 109.47416 * 240.00248 * 2 1 3 28 28 H 1.09001 * 109.47246 * 119.99400 * 2 1 3 29 29 H 1.09003 * 109.46879 * 59.99499 * 3 2 1 30 30 H 1.09001 * 109.46679 * 299.99747 * 3 2 1 31 31 H 1.08995 * 109.47009 * 65.45908 * 4 3 2 32 32 H 1.08996 * 109.46774 * 305.45431 * 4 3 2 33 33 H 0.97003 * 120.00056 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47656 * 157.23236 * 14 5 4 35 35 H 1.09004 * 109.47136 * 37.22939 * 14 5 4 36 36 H 1.08005 * 126.12377 * 0.02562 * 16 15 14 37 37 H 1.08994 * 109.46941 * 270.02224 * 18 17 16 38 38 H 1.08992 * 109.46821 * 30.02387 * 18 17 16 39 39 H 1.08999 * 109.46785 * 150.01941 * 18 17 16 40 40 H 1.09001 * 115.54977 * 150.10929 * 21 20 19 41 41 H 1.08999 * 117.49120 * 0.02562 * 22 21 20 42 42 H 1.08993 * 117.50190 * 145.01788 * 22 21 20 43 43 H 1.08995 * 117.50166 * 252.50736 * 23 22 21 44 44 H 1.09001 * 117.51359 * 107.47751 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8176 0.1308 6 6 4.1490 3.6205 -0.9749 7 1 4.0834 3.1888 -1.9626 8 6 4.3251 4.9893 -0.8259 9 7 4.4757 5.5067 0.3750 10 14 4.3485 6.0972 -2.3297 11 1 2.9684 6.5580 -2.6266 12 1 5.2167 7.2724 -2.0653 13 1 4.8789 5.3416 -3.4929 14 6 4.4496 3.3335 1.4448 15 6 3.2237 3.8005 2.1865 16 6 2.7854 5.0777 2.2757 17 7 1.6618 5.0758 3.0229 18 6 0.8567 6.2491 3.3718 19 7 1.4005 3.7537 3.4052 20 6 2.3372 2.9904 2.9036 21 6 2.4424 1.4962 3.0690 22 6 1.3070 0.7856 3.8086 23 6 2.6700 0.9561 4.4823 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9328 1.0159 -0.9357 32 1 3.9336 0.8464 0.8362 33 1 4.5984 6.4633 0.4791 34 1 5.1373 4.1695 1.3170 35 1 4.9397 2.5437 2.0141 36 1 3.2511 5.9433 1.8281 37 1 1.2213 6.6750 4.3064 38 1 0.9353 6.9925 2.5786 39 1 -0.1855 5.9525 3.4897 40 1 2.9169 0.9642 2.2445 41 1 0.4838 1.3989 4.1751 42 1 1.0342 -0.2141 3.4705 43 1 3.2940 0.0687 4.5876 44 1 2.7440 1.6816 5.2924 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232175022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:59 Heat of formation + Delta-G solvation = 119.552987 kcal Electronic energy + Delta-G solvation = -23271.716765 eV Core-core repulsion = 20227.408476 eV Total energy + Delta-G solvation = -3044.308289 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.81815 -38.31609 -37.60145 -35.58119 -33.62656 -32.88413 -31.21255 -29.35384 -28.28916 -26.54276 -25.07172 -23.61528 -23.18557 -22.66754 -21.66782 -20.67344 -19.83057 -18.80649 -17.14904 -16.88930 -16.65179 -15.92255 -15.85875 -15.33692 -15.16418 -14.87794 -14.79150 -14.04741 -13.87957 -13.55360 -13.38645 -13.32889 -13.13806 -12.83197 -12.76292 -12.55333 -12.37253 -12.29808 -12.14456 -11.88108 -11.76804 -11.62920 -11.50088 -11.46471 -11.36374 -11.16748 -10.90347 -10.35465 -9.60829 -8.79477 -8.55785 -7.49053 -5.07967 1.33441 1.50419 1.53319 1.58936 2.00869 2.22045 2.60004 3.20898 3.41128 3.80235 3.94400 3.96222 4.10825 4.22599 4.29412 4.37923 4.47063 4.48417 4.52730 4.60417 4.63961 4.76081 4.82924 4.89635 5.01320 5.03243 5.08923 5.10645 5.14180 5.20227 5.23209 5.35280 5.37664 5.47558 5.49693 5.60492 5.67681 5.80995 5.94628 6.03941 6.30965 6.63307 6.71022 7.22281 7.38475 8.07583 8.45407 9.32215 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.008355 C = 0.006301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.892400 B = 3350.311273 C = 4442.952867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.132 4.132 4 C 0.149 3.851 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.065 0.935 8 C -0.052 4.052 9 N -0.917 5.917 10 Si 0.961 3.039 11 H -0.300 1.300 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.219 3.781 15 C -0.221 4.221 16 C 0.073 3.927 17 N -0.407 5.407 18 C 0.106 3.894 19 N -0.348 5.348 20 C 0.095 3.905 21 C -0.093 4.093 22 C -0.156 4.156 23 C -0.158 4.158 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.021 0.979 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.243 0.757 34 H 0.116 0.884 35 H 0.005 0.995 36 H 0.189 0.811 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.125 0.875 41 H 0.082 0.918 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 -6.133 5.704 9.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.172 4.172 4 C 0.023 3.977 5 N -0.326 5.326 6 C -0.359 4.359 7 H 0.083 0.917 8 C -0.244 4.244 9 N -0.569 5.569 10 Si 0.793 3.207 11 H -0.228 1.228 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.093 3.907 15 C -0.233 4.233 16 C -0.072 4.072 17 N -0.191 5.191 18 C -0.035 4.035 19 N -0.171 5.171 20 C -0.070 4.070 21 C -0.113 4.113 22 C -0.193 4.193 23 C -0.196 4.196 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.133 0.867 35 H 0.023 0.977 36 H 0.205 0.795 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.143 0.857 41 H 0.101 0.899 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.402 -5.769 6.413 10.742 hybrid contribution 0.497 1.249 -1.492 2.008 sum -5.905 -4.519 4.921 8.917 Atomic orbital electron populations 1.21706 0.95855 1.01806 1.00800 1.21459 0.95924 0.95772 1.02022 1.22201 0.98230 0.96563 1.00178 1.21006 0.92327 0.85816 0.98580 1.44391 1.74156 1.09876 1.04226 1.19609 1.39822 0.89327 0.87106 0.91746 1.25297 1.03247 0.97366 0.98463 1.69933 1.57348 1.10114 1.19535 0.85334 0.76396 0.78905 0.80101 1.22847 1.21845 1.20711 1.19785 0.92530 0.96936 0.81470 1.20776 1.03815 0.92034 1.06697 1.23561 0.87707 1.02159 0.93726 1.48714 1.22176 1.06120 1.42093 1.21858 0.95551 0.83827 1.02239 1.76833 1.24903 0.88427 1.26970 1.21535 0.93332 0.95044 0.97137 1.20575 1.05989 0.87364 0.97383 1.22900 0.91784 1.01639 1.02984 1.23014 0.99939 1.02924 0.93719 0.91034 0.93832 0.94087 0.91905 0.91154 0.92783 0.96028 0.94703 0.92606 0.94511 0.86743 0.97732 0.79507 0.90075 0.89156 0.89549 0.85740 0.89936 0.86495 0.86077 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.91 71.98 0.71 -3.09 16 2 C -0.11 -3.26 5.88 30.60 0.18 -3.08 16 3 C -0.13 -5.06 4.59 30.60 0.14 -4.92 16 4 C 0.15 6.04 5.15 86.38 0.44 6.48 16 5 N -0.61 -29.59 2.54 -706.37 -1.79 -31.38 16 6 C -0.23 -12.12 9.76 84.03 0.82 -11.30 16 7 H 0.06 3.41 7.83 -2.91 -0.02 3.38 16 8 C -0.05 -2.72 5.41 84.86 0.46 -2.26 16 9 N -0.92 -47.63 6.00 21.65 0.13 -47.50 16 10 Si 0.96 43.80 29.56 68.60 2.03 45.83 16 11 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 12 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 C 0.22 10.62 5.26 85.63 0.45 11.07 16 15 C -0.22 -10.32 5.38 -20.14 -0.11 -10.43 16 16 C 0.07 3.35 10.25 83.54 0.86 4.21 16 17 N -0.41 -16.60 4.01 -369.57 -1.48 -18.08 16 18 C 0.11 3.06 11.47 127.77 1.47 4.53 16 19 N -0.35 -14.81 12.13 -47.38 -0.57 -15.39 16 20 C 0.09 4.00 5.29 43.10 0.23 4.23 16 21 C -0.09 -3.20 4.70 -11.54 -0.05 -3.25 16 22 C -0.16 -4.38 10.14 30.59 0.31 -4.07 16 23 C -0.16 -4.40 10.23 30.60 0.31 -4.09 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.81 7.64 -2.39 -0.02 1.79 16 29 H 0.05 2.30 4.58 -2.39 -0.01 2.29 16 30 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.03 1.40 8.10 -2.39 -0.02 1.38 16 32 H 0.06 2.07 6.09 -2.39 -0.01 2.05 16 33 H 0.24 12.25 7.97 -92.71 -0.74 11.51 16 34 H 0.12 6.20 5.12 -10.51 -0.05 6.14 16 35 H 0.00 0.22 7.98 -2.39 -0.02 0.20 16 36 H 0.19 8.89 5.42 -2.91 -0.02 8.87 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.13 4.28 3.73 -2.39 -0.01 4.27 16 41 H 0.08 2.56 7.87 -2.39 -0.02 2.54 16 42 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -60.74 340.87 5.49 -55.25 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.97 Total: 27.24 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 6.22 Total: -15.96 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -3.72 Total: -112.35 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -60.74 5.49 -55.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232175022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.800 kcal (2) G-P(sol) polarization free energy of solvation -60.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds