Wall clock time and date at job start Mon Mar 30 2020 01:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47015 * 2 1 4 4 C 1.53000 * 109.47015 * 179.97438 * 3 2 1 5 5 N 1.46907 * 109.47379 * 179.60037 * 4 3 2 6 6 C 1.46900 * 110.99693 * 298.09470 * 5 4 3 7 7 C 1.50691 * 109.47189 * 292.95281 * 6 5 4 8 8 H 1.08000 * 120.00479 * 354.95493 * 7 6 5 9 9 C 1.37880 * 120.00257 * 174.96542 * 7 6 5 10 10 N 1.31516 * 119.99326 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00231 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47222 * 59.99485 * 11 9 7 13 13 H 1.48506 * 109.47064 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46928 * 299.99222 * 11 9 7 15 15 C 1.46906 * 110.99729 * 62.04818 * 5 4 3 16 16 C 1.50695 * 109.47256 * 66.04815 * 15 5 4 17 17 N 1.30736 * 125.88320 * 269.68894 * 16 15 5 18 18 N 1.39996 * 108.22002 * 179.88385 * 17 16 15 19 19 H 0.96996 * 126.03701 * 180.15483 * 18 17 16 20 20 C 1.35226 * 107.93392 * 0.38331 * 18 17 16 21 21 C 1.35137 * 107.74551 * 359.77378 * 20 18 17 22 22 C 1.51355 * 110.24708 * 179.97438 * 21 20 18 23 23 C 1.54435 * 105.00791 * 16.93522 * 22 21 20 24 24 C 1.51320 * 141.94817 * 179.77881 * 20 18 17 25 25 H 1.08999 * 109.47269 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47432 * 300.00310 * 1 2 3 27 27 H 1.08999 * 109.47126 * 60.00469 * 1 2 3 28 28 H 1.08998 * 109.46820 * 239.99313 * 2 1 3 29 29 H 1.08997 * 109.46622 * 120.00105 * 2 1 3 30 30 H 1.08998 * 109.47887 * 59.99966 * 3 2 1 31 31 H 1.08997 * 109.47511 * 299.99561 * 3 2 1 32 32 H 1.09000 * 109.47446 * 59.60108 * 4 3 2 33 33 H 1.08999 * 109.47051 * 299.59989 * 4 3 2 34 34 H 1.09001 * 109.46710 * 52.95334 * 6 5 4 35 35 H 1.09002 * 109.46746 * 172.95007 * 6 5 4 36 36 H 0.97008 * 119.99530 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.46595 * 306.04655 * 15 5 4 38 38 H 1.09003 * 109.46586 * 186.04835 * 15 5 4 39 39 H 1.09002 * 110.33867 * 135.81566 * 22 21 20 40 40 H 1.08999 * 110.33845 * 257.94645 * 22 21 20 41 41 H 1.09009 * 110.92858 * 92.44639 * 23 22 21 42 42 H 1.08995 * 110.93094 * 216.06256 * 23 22 21 43 43 H 1.08999 * 110.33344 * 44.19238 * 24 20 18 44 44 H 1.09000 * 110.42337 * 281.99385 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4424 0.0006 5 7 4.0597 2.8274 -0.0090 6 6 3.6268 3.5304 -1.2241 7 6 4.3066 2.9239 -2.4244 8 1 5.0523 2.1541 -2.2912 9 6 3.9767 3.3518 -3.6930 10 7 3.0684 4.2889 -3.8553 11 14 4.8199 2.6005 -5.1809 12 1 4.5551 1.1397 -5.2148 13 1 4.2912 3.2278 -6.4187 14 1 6.2833 2.8364 -5.0921 15 6 3.6286 3.5466 1.1972 16 6 4.2913 2.9405 2.4073 17 7 3.8129 1.9656 3.1353 18 7 4.7278 1.6946 4.1597 19 1 4.6308 1.0170 4.8469 20 6 5.7683 2.5477 4.0251 21 6 5.5241 3.3289 2.9498 22 6 6.6585 4.3100 2.7466 23 6 7.8306 3.7438 3.5776 24 6 7.0919 2.9216 4.6560 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9223 -0.8855 33 1 3.9329 0.9350 0.8944 34 1 2.5462 3.4366 -1.3325 35 1 3.8944 4.5843 -1.1489 36 1 2.8360 4.5897 -4.7478 37 1 2.5461 3.4693 1.2988 38 1 3.9119 4.5960 1.1152 39 1 6.9314 4.3606 1.6925 40 1 6.3755 5.2973 3.1117 41 1 8.4666 3.1024 2.9673 42 1 8.4114 4.5476 4.0298 43 1 7.6597 2.0250 4.9046 44 1 6.9306 3.5265 5.5483 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232427360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:14 Heat of formation + Delta-G solvation = 69.089447 kcal Electronic energy + Delta-G solvation = -22083.027773 eV Core-core repulsion = 19036.531220 eV Total energy + Delta-G solvation = -3046.496553 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36066 -37.46638 -36.04188 -33.85204 -32.69335 -31.46169 -28.32634 -27.97454 -27.71742 -27.00906 -24.79003 -23.13973 -21.40073 -21.06185 -20.27149 -19.37485 -18.52325 -17.12675 -16.12582 -15.78443 -15.17060 -14.64703 -14.51257 -14.05731 -13.77412 -13.43775 -13.26522 -12.95424 -12.74578 -12.53845 -12.33703 -12.08118 -12.01210 -11.55468 -11.13217 -11.09237 -11.04706 -10.96414 -10.79341 -10.70093 -10.58407 -10.44576 -10.37086 -10.15513 -9.84074 -9.58600 -9.20570 -8.97670 -8.35629 -8.01573 -7.05356 -5.95983 -3.96179 2.07638 2.85440 3.02476 3.37827 3.41507 3.45024 4.47896 4.51146 4.69059 4.95982 5.00339 5.25329 5.31185 5.39474 5.46040 5.46911 5.50476 5.52329 5.67244 5.73189 5.79034 5.92208 5.99308 6.14597 6.21208 6.23718 6.24829 6.30286 6.36894 6.40707 6.44911 6.46294 6.62525 6.69994 6.90213 6.96733 7.11227 7.38663 7.51851 7.53161 7.88556 7.98718 8.17567 8.29579 8.63226 9.11534 9.67306 11.14586 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014071 B = 0.005521 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.467036 B = 5070.670511 C = 6510.964030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.154 4.154 4 C 0.069 3.931 5 N -0.526 5.526 6 C 0.190 3.810 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.124 3.876 16 C 0.125 3.875 17 N -0.284 5.284 18 N -0.469 5.469 19 H 0.431 0.569 20 C 0.037 3.963 21 C -0.230 4.230 22 C -0.047 4.047 23 C -0.114 4.114 24 C -0.041 4.041 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.005 0.995 35 H 0.025 0.975 36 H 0.260 0.740 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.342 -3.322 16.427 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.193 4.193 4 C -0.060 4.060 5 N -0.250 5.250 6 C 0.065 3.935 7 C -0.540 4.540 8 H 0.079 0.921 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.723 3.277 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.006 4.006 16 C -0.042 4.042 17 N -0.107 5.107 18 N -0.176 5.176 19 H 0.273 0.727 20 C -0.091 4.091 21 C -0.241 4.241 22 C -0.085 4.085 23 C -0.152 4.152 24 C -0.081 4.081 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.022 0.978 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.803 -4.011 16.420 17.325 hybrid contribution -0.013 -0.273 -0.564 0.626 sum 3.790 -4.284 15.856 16.856 Atomic orbital electron populations 1.21757 0.96710 1.00586 1.01564 1.21383 0.95073 0.97698 1.01181 1.22189 0.98840 0.96263 1.01970 1.22001 0.91674 0.91119 1.01195 1.62322 1.59136 1.02020 1.01531 1.19793 0.94820 0.93749 0.85137 1.21087 1.21753 1.21167 0.89960 0.92062 1.24949 0.95323 0.95305 0.98907 1.69951 1.32020 1.29433 1.22526 0.86611 0.79859 0.79305 0.81922 1.20374 1.21451 1.20238 1.20475 0.96294 0.97341 0.86455 1.21913 0.93096 0.93389 0.95821 1.77394 1.13751 1.19041 1.00498 1.45602 1.15034 1.30505 1.26433 0.72665 1.21773 0.93607 0.94180 0.99549 1.20763 0.98764 1.04665 0.99927 1.20391 0.90783 0.96104 1.01234 1.22363 0.97362 0.99141 0.96385 1.20672 0.89047 0.99981 0.98354 0.93573 0.93262 0.92780 0.92298 0.92863 0.92807 0.90832 0.90538 0.92765 0.97756 0.95658 0.92994 0.93933 0.89724 0.90294 0.91321 0.90660 0.90369 0.90909 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.12 -1.91 5.93 -26.74 -0.16 -2.07 16 3 C -0.15 -2.97 4.56 -26.74 -0.12 -3.09 16 4 C 0.07 1.43 4.99 -3.82 -0.02 1.41 16 5 N -0.53 -11.66 4.69 -237.51 -1.11 -12.77 16 6 C 0.19 4.90 4.53 -4.98 -0.02 4.88 16 7 C -0.50 -14.04 8.40 -34.44 -0.29 -14.33 16 8 H 0.06 1.73 7.37 -52.49 -0.39 1.34 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 11 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 15 C 0.12 2.42 5.32 -4.98 -0.03 2.39 16 16 C 0.12 2.24 5.85 -82.33 -0.48 1.76 16 17 N -0.28 -4.89 11.92 33.71 0.40 -4.49 16 18 N -0.47 -6.42 7.37 33.65 0.25 -6.17 16 19 H 0.43 4.33 8.96 -182.68 -1.64 2.69 16 20 C 0.04 0.50 8.07 -81.90 -0.66 -0.16 16 21 C -0.23 -3.63 6.83 -104.68 -0.72 -4.35 16 22 C -0.05 -0.61 6.79 -26.81 -0.18 -0.79 16 23 C -0.11 -1.10 7.12 -25.23 -0.18 -1.28 16 24 C -0.04 -0.38 6.78 -26.83 -0.18 -0.57 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 1.03 6.34 -51.93 -0.33 0.70 16 31 H 0.07 1.62 6.28 -51.93 -0.33 1.29 16 32 H 0.08 1.73 6.98 -51.93 -0.36 1.37 16 33 H 0.05 1.11 6.63 -51.93 -0.34 0.76 16 34 H 0.00 0.13 6.01 -51.93 -0.31 -0.18 16 35 H 0.03 0.69 7.91 -51.93 -0.41 0.28 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.04 0.83 6.07 -51.93 -0.32 0.51 16 38 H 0.08 1.59 7.92 -51.93 -0.41 1.18 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 347.00 15.07 5.23 5.23 Total: -1.00 -31.34 347.00 -10.91 -42.25 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -8.62 Total: 1.54 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.77 Total: -16.50 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.27 Total: -49.30 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.34 -10.91 -42.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232427360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.336 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds