Wall clock time and date at job start Mon Mar 30 2020 01:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47015 * 2 1 4 4 C 1.53000 * 109.47015 * 179.97438 * 3 2 1 5 5 N 1.46907 * 109.47379 * 179.60037 * 4 3 2 6 6 C 1.46900 * 110.99693 * 298.09470 * 5 4 3 7 7 C 1.50691 * 109.47189 * 292.95281 * 6 5 4 8 8 H 1.08000 * 120.00479 * 354.95493 * 7 6 5 9 9 C 1.37880 * 120.00257 * 174.96542 * 7 6 5 10 10 N 1.31516 * 119.99326 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00231 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47222 * 59.99485 * 11 9 7 13 13 H 1.48506 * 109.47064 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46928 * 299.99222 * 11 9 7 15 15 C 1.46906 * 110.99729 * 62.04818 * 5 4 3 16 16 C 1.50695 * 109.47256 * 66.04815 * 15 5 4 17 17 N 1.30736 * 125.88320 * 269.68894 * 16 15 5 18 18 N 1.39996 * 108.22002 * 179.88385 * 17 16 15 19 19 H 0.96996 * 126.03701 * 180.15483 * 18 17 16 20 20 C 1.35226 * 107.93392 * 0.38331 * 18 17 16 21 21 C 1.35137 * 107.74551 * 359.77378 * 20 18 17 22 22 C 1.51355 * 110.24708 * 179.97438 * 21 20 18 23 23 C 1.54435 * 105.00791 * 16.93522 * 22 21 20 24 24 C 1.51320 * 141.94817 * 179.77881 * 20 18 17 25 25 H 1.08999 * 109.47269 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47432 * 300.00310 * 1 2 3 27 27 H 1.08999 * 109.47126 * 60.00469 * 1 2 3 28 28 H 1.08998 * 109.46820 * 239.99313 * 2 1 3 29 29 H 1.08997 * 109.46622 * 120.00105 * 2 1 3 30 30 H 1.08998 * 109.47887 * 59.99966 * 3 2 1 31 31 H 1.08997 * 109.47511 * 299.99561 * 3 2 1 32 32 H 1.09000 * 109.47446 * 59.60108 * 4 3 2 33 33 H 1.08999 * 109.47051 * 299.59989 * 4 3 2 34 34 H 1.09001 * 109.46710 * 52.95334 * 6 5 4 35 35 H 1.09002 * 109.46746 * 172.95007 * 6 5 4 36 36 H 0.97008 * 119.99530 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.46595 * 306.04655 * 15 5 4 38 38 H 1.09003 * 109.46586 * 186.04835 * 15 5 4 39 39 H 1.09002 * 110.33867 * 135.81566 * 22 21 20 40 40 H 1.08999 * 110.33845 * 257.94645 * 22 21 20 41 41 H 1.09009 * 110.92858 * 92.44639 * 23 22 21 42 42 H 1.08995 * 110.93094 * 216.06256 * 23 22 21 43 43 H 1.08999 * 110.33344 * 44.19238 * 24 20 18 44 44 H 1.09000 * 110.42337 * 281.99385 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4424 0.0006 5 7 4.0597 2.8274 -0.0090 6 6 3.6268 3.5304 -1.2241 7 6 4.3066 2.9239 -2.4244 8 1 5.0523 2.1541 -2.2912 9 6 3.9767 3.3518 -3.6930 10 7 3.0684 4.2889 -3.8553 11 14 4.8199 2.6005 -5.1809 12 1 4.5551 1.1397 -5.2148 13 1 4.2912 3.2278 -6.4187 14 1 6.2833 2.8364 -5.0921 15 6 3.6286 3.5466 1.1972 16 6 4.2913 2.9405 2.4073 17 7 3.8129 1.9656 3.1353 18 7 4.7278 1.6946 4.1597 19 1 4.6308 1.0170 4.8469 20 6 5.7683 2.5477 4.0251 21 6 5.5241 3.3289 2.9498 22 6 6.6585 4.3100 2.7466 23 6 7.8306 3.7438 3.5776 24 6 7.0919 2.9216 4.6560 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9223 -0.8855 33 1 3.9329 0.9350 0.8944 34 1 2.5462 3.4366 -1.3325 35 1 3.8944 4.5843 -1.1489 36 1 2.8360 4.5897 -4.7478 37 1 2.5461 3.4693 1.2988 38 1 3.9119 4.5960 1.1152 39 1 6.9314 4.3606 1.6925 40 1 6.3755 5.2973 3.1117 41 1 8.4666 3.1024 2.9673 42 1 8.4114 4.5476 4.0298 43 1 7.6597 2.0250 4.9046 44 1 6.9306 3.5265 5.5483 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232427360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:13 Heat of formation + Delta-G solvation = 49.440855 kcal Electronic energy + Delta-G solvation = -22083.879800 eV Core-core repulsion = 19036.531220 eV Total energy + Delta-G solvation = -3047.348580 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.51363 -39.18090 -37.01917 -35.39055 -34.68691 -32.89440 -29.90759 -29.37581 -29.02891 -28.15598 -26.47711 -25.03267 -22.58593 -22.33659 -21.77987 -20.59627 -19.96446 -18.32572 -18.17910 -17.03953 -16.67873 -16.41523 -16.08423 -15.61876 -15.32463 -14.74069 -14.49147 -14.20113 -13.99071 -13.86452 -13.65100 -13.53867 -13.43466 -13.06173 -12.90220 -12.60719 -12.58674 -12.36503 -12.21914 -12.07129 -11.94339 -11.93671 -11.82673 -11.69726 -11.37395 -11.28561 -11.24916 -10.56214 -10.24533 -9.14253 -8.89323 -8.15636 -6.24550 0.92555 1.41649 1.44526 1.52248 1.74435 1.81002 2.43359 3.16707 3.40752 3.58608 3.82800 3.89466 3.98493 4.01941 4.13356 4.27724 4.31378 4.43141 4.47619 4.55758 4.63742 4.79426 4.82750 4.87742 4.89106 4.92501 4.96390 5.05017 5.10633 5.14886 5.20920 5.24205 5.27217 5.34053 5.37648 5.44716 5.45903 5.51838 5.69140 5.74514 6.09667 6.35094 6.54846 6.63782 6.78159 6.90253 7.43946 8.94646 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014071 B = 0.005521 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.467036 B = 5070.670511 C = 6510.964030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.078 3.922 5 N -0.532 5.532 6 C 0.207 3.793 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.007 3.993 10 N -0.932 5.932 11 Si 0.963 3.037 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.269 1.269 15 C 0.131 3.869 16 C 0.100 3.900 17 N -0.309 5.309 18 N -0.456 5.456 19 H 0.448 0.552 20 C 0.057 3.943 21 C -0.270 4.270 22 C -0.050 4.050 23 C -0.106 4.106 24 C -0.035 4.035 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.063 0.937 34 H -0.018 1.018 35 H 0.002 0.998 36 H 0.263 0.737 37 H 0.037 0.963 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.886 -4.666 18.233 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.180 4.180 4 C -0.050 4.050 5 N -0.256 5.256 6 C 0.081 3.919 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.192 4.192 10 N -0.573 5.573 11 Si 0.788 3.212 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.194 1.194 15 C 0.001 3.999 16 C -0.065 4.065 17 N -0.133 5.133 18 N -0.164 5.164 19 H 0.294 0.706 20 C -0.073 4.073 21 C -0.281 4.281 22 C -0.089 4.089 23 C -0.144 4.144 24 C -0.074 4.074 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.000 1.000 35 H 0.020 0.980 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.343 -5.374 18.251 19.762 hybrid contribution -0.489 0.159 -1.022 1.144 sum 4.854 -5.215 17.229 18.644 Atomic orbital electron populations 1.21719 0.94975 1.02152 1.01354 1.21358 0.96611 0.95375 1.01593 1.22023 0.97611 0.98110 1.00247 1.21883 0.92667 0.90093 1.00375 1.62207 1.59455 1.02600 1.01306 1.19427 0.93191 0.92663 0.86604 1.21326 1.21868 1.21216 0.91106 0.92593 1.25799 0.95848 0.95591 1.01911 1.70076 1.33232 1.30588 1.23359 0.85534 0.78952 0.78649 0.78076 1.19572 1.20734 1.19390 1.20332 0.96131 0.97122 0.86307 1.21653 0.94472 0.94634 0.95770 1.77270 1.15154 1.19251 1.01670 1.45603 1.14472 1.30574 1.25800 0.70626 1.22476 0.94205 0.92130 0.98495 1.21168 0.98932 1.06667 1.01335 1.20491 0.91488 0.96410 1.00503 1.22387 0.96117 0.99951 0.95946 1.20878 0.86482 1.01361 0.98639 0.91090 0.92692 0.93820 0.92696 0.91540 0.92723 0.94169 0.92677 0.91869 1.00015 0.98033 0.92776 0.94548 0.90139 0.92958 0.90526 0.90909 0.87337 0.88315 0.87245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.91 71.98 0.71 -3.39 16 2 C -0.11 -3.66 5.93 30.59 0.18 -3.48 16 3 C -0.14 -5.65 4.56 30.59 0.14 -5.51 16 4 C 0.08 3.38 4.99 86.30 0.43 3.81 16 5 N -0.53 -24.83 4.69 -905.35 -4.24 -29.07 16 6 C 0.21 11.35 4.53 85.55 0.39 11.74 16 7 C -0.52 -30.03 8.40 25.60 0.21 -29.82 16 8 H 0.06 3.25 7.37 -2.91 -0.02 3.23 16 9 C 0.01 0.38 5.46 84.66 0.46 0.84 16 10 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 11 Si 0.96 45.21 29.54 68.60 2.03 47.23 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 15 C 0.13 5.36 5.32 85.55 0.45 5.82 16 16 C 0.10 3.66 5.85 43.19 0.25 3.91 16 17 N -0.31 -10.52 11.92 -47.25 -0.56 -11.09 16 18 N -0.46 -11.55 7.37 -47.46 -0.35 -11.90 16 19 H 0.45 7.81 8.96 -213.39 -1.91 5.89 16 20 C 0.06 1.39 8.07 41.52 0.34 1.72 16 21 C -0.27 -8.40 6.83 -19.90 -0.14 -8.53 16 22 C -0.05 -1.28 6.79 30.54 0.21 -1.07 16 23 C -0.11 -1.71 7.12 31.57 0.22 -1.49 16 24 C -0.03 -0.50 6.78 30.53 0.21 -0.29 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.05 2.16 6.34 -2.39 -0.02 2.15 16 31 H 0.04 1.87 6.28 -2.39 -0.01 1.86 16 32 H 0.05 2.59 6.98 -2.39 -0.02 2.58 16 33 H 0.06 2.62 6.63 -2.39 -0.02 2.61 16 34 H -0.02 -1.04 6.01 -2.39 -0.01 -1.06 16 35 H 0.00 0.09 7.91 -2.39 -0.02 0.07 16 36 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 37 H 0.04 1.51 6.07 -2.39 -0.01 1.49 16 38 H 0.08 3.26 7.92 -2.39 -0.02 3.24 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 1.22 8.14 -2.38 -0.02 1.21 16 42 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.24 347.00 0.30 -69.93 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -0.93 Total: 17.00 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 4.08 Total: -25.73 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -4.87 Total: -108.44 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -70.24 0.30 -69.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232427360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.375 kcal (2) G-P(sol) polarization free energy of solvation -70.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds