Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46496 * 109.47487 * 179.97438 * 3 2 1 5 5 C 1.35049 * 126.39448 * 90.02982 * 4 3 2 6 6 N 1.30497 * 108.69535 * 180.02562 * 5 4 3 7 7 C 1.34128 * 109.26239 * 359.97438 * 6 5 4 8 8 C 1.50699 * 125.99189 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.47047 * 274.97567 * 8 7 6 10 10 C 1.46848 * 110.99918 * 66.04285 * 9 8 7 11 11 C 1.53033 * 109.52224 * 185.83874 * 10 9 8 12 12 C 1.53125 * 109.28243 * 300.82301 * 11 10 9 13 13 C 1.53126 * 109.15500 * 57.65311 * 12 11 10 14 14 H 1.09000 * 109.50190 * 62.32929 * 13 12 11 15 15 C 1.50703 * 109.49745 * 182.40614 * 13 12 11 16 16 H 1.07994 * 119.99710 * 120.00557 * 15 13 12 17 17 C 1.37874 * 120.00316 * 299.99770 * 15 13 12 18 18 N 1.31507 * 120.00433 * 180.02562 * 17 15 13 19 19 Si 1.86804 * 119.99916 * 0.02562 * 17 15 13 20 20 H 1.48498 * 109.47091 * 89.99829 * 19 17 15 21 21 H 1.48497 * 109.47213 * 209.99854 * 19 17 15 22 22 H 1.48501 * 109.47311 * 329.99848 * 19 17 15 23 23 C 1.46845 * 111.00328 * 190.25625 * 9 8 7 24 24 C 1.34668 * 108.01546 * 359.73621 * 7 6 5 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 32 32 H 1.07998 * 125.65055 * 359.96019 * 5 4 3 33 33 H 1.08994 * 109.47294 * 34.97371 * 8 7 6 34 34 H 1.08997 * 109.47012 * 154.97511 * 8 7 6 35 35 H 1.09000 * 109.46588 * 305.85652 * 10 9 8 36 36 H 1.09004 * 109.45946 * 65.82670 * 10 9 8 37 37 H 1.09000 * 109.50649 * 60.76745 * 11 10 9 38 38 H 1.09005 * 109.50294 * 180.88511 * 11 10 9 39 39 H 1.08995 * 109.52257 * 177.55665 * 12 11 10 40 40 H 1.09000 * 109.52340 * 297.68777 * 12 11 10 41 41 H 0.97004 * 120.00507 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.46213 * 294.18149 * 23 9 8 43 43 H 1.09004 * 109.46061 * 54.14087 * 23 9 8 44 44 H 1.08003 * 126.58792 * 180.28455 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3067 1.4429 -1.0861 6 7 5.5498 1.4423 -0.6889 7 6 5.5858 1.4420 0.6519 8 6 6.8284 1.4418 1.5045 9 7 7.3002 0.0619 1.6821 10 6 7.7515 -0.5083 0.4064 11 6 8.0973 -1.9863 0.6007 12 6 9.1993 -2.1133 1.6563 13 6 8.7221 -1.4689 2.9608 14 1 7.8460 -2.0017 3.3306 15 6 9.8231 -1.5371 3.9876 16 1 10.2214 -0.6280 4.4133 17 6 10.3217 -2.7599 4.3837 18 7 11.2821 -2.8194 5.2801 19 14 9.6331 -4.3324 3.6469 20 1 10.4070 -4.6896 2.4310 21 1 9.7368 -5.4313 4.6403 22 1 8.2079 -4.1263 3.2839 23 6 8.3583 -0.0059 2.6981 24 6 4.3168 1.4484 1.1027 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.9742 1.4427 -2.1136 33 1 7.6044 2.0309 1.0158 34 1 6.6012 1.8763 2.4779 35 1 6.9572 -0.4154 -0.3343 36 1 8.6348 0.0289 0.0608 37 1 7.2110 -2.5268 0.9330 38 1 8.4473 -2.4053 -0.3429 39 1 9.4183 -3.1669 1.8293 40 1 10.0989 -1.6069 1.3065 41 1 11.6332 -3.6798 5.5584 42 1 9.2387 0.5290 2.3418 43 1 8.0046 0.4519 3.6219 44 1 4.0005 1.4542 2.1353 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232798810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = 36.840678 kcal Electronic energy + Delta-G solvation = -21749.211014 eV Core-core repulsion = 18701.316050 eV Total energy + Delta-G solvation = -3047.894964 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.94736 -39.86896 -36.70542 -35.58934 -34.04397 -32.78646 -31.98021 -30.83022 -27.93352 -26.79955 -26.49524 -23.88281 -23.13008 -22.81909 -21.66944 -20.87913 -20.46977 -18.81827 -17.94782 -17.23672 -16.37967 -16.13606 -15.85226 -15.73290 -15.39878 -15.24797 -14.89463 -14.76897 -14.65809 -14.21910 -14.01854 -13.74698 -13.50712 -13.09260 -12.94593 -12.83292 -12.69015 -12.61092 -12.31158 -12.18327 -11.87639 -11.75362 -11.73354 -11.44795 -11.02285 -10.90966 -10.71286 -10.60358 -10.38442 -9.34307 -9.09317 -8.29239 -6.32210 1.19410 1.30758 1.36225 1.48027 1.99694 2.14165 2.33830 3.06471 3.26214 3.75275 3.79134 3.92712 4.03761 4.06103 4.10629 4.17318 4.31003 4.37440 4.44406 4.47103 4.52044 4.60456 4.66192 4.70521 4.81186 4.83433 4.83766 4.94510 5.05139 5.09228 5.12198 5.15680 5.17709 5.24064 5.37887 5.42869 5.44324 5.64064 5.72837 5.82144 6.19675 6.29263 6.37863 6.43339 6.74831 7.24918 7.33352 8.87622 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024381 B = 0.003872 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.174903 B = 7230.489060 C = 7637.237855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.104 3.896 4 N -0.457 5.457 5 C 0.181 3.819 6 N -0.529 5.529 7 C -0.014 4.014 8 C 0.140 3.860 9 N -0.538 5.538 10 C 0.073 3.927 11 C -0.112 4.112 12 C -0.121 4.121 13 C 0.023 3.977 14 H 0.026 0.974 15 C -0.517 4.517 16 H 0.035 0.965 17 C 0.014 3.986 18 N -0.950 5.950 19 Si 0.950 3.050 20 H -0.269 1.269 21 H -0.297 1.297 22 H -0.250 1.250 23 C 0.087 3.913 24 C -0.035 4.035 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.233 0.767 33 H 0.029 0.971 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.018 0.982 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.047 0.953 41 H 0.266 0.734 42 H 0.014 0.986 43 H 0.067 0.933 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.265 8.349 -14.475 29.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.017 4.017 4 N -0.139 5.139 5 C -0.101 4.101 6 N -0.249 5.249 7 C -0.142 4.142 8 C 0.012 3.988 9 N -0.263 5.263 10 C -0.055 4.055 11 C -0.149 4.149 12 C -0.158 4.158 13 C 0.003 3.997 14 H 0.044 0.956 15 C -0.556 4.556 16 H 0.054 0.946 17 C -0.183 4.183 18 N -0.591 5.591 19 Si 0.777 3.223 20 H -0.195 1.195 21 H -0.225 1.225 22 H -0.174 1.174 23 C -0.040 4.040 24 C -0.169 4.169 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.249 0.751 33 H 0.048 0.952 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.033 0.967 43 H 0.086 0.914 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -24.029 7.987 -14.720 29.289 hybrid contribution 0.589 -0.384 0.470 0.845 sum -23.440 7.603 -14.250 28.466 Atomic orbital electron populations 1.21673 0.92985 1.02644 1.03044 1.21857 0.97761 0.95517 1.02383 1.22223 0.74331 0.98714 1.06437 1.45716 1.08516 1.53608 1.06044 1.25493 0.84854 1.04798 0.95004 1.70080 1.21582 1.21158 1.12063 1.20394 0.94198 1.09112 0.90486 1.20207 0.92063 0.88694 0.97825 1.61977 1.36846 1.19095 1.08339 1.21920 0.98278 0.94154 0.91133 1.21612 0.98250 0.96495 0.98577 1.21922 0.98089 0.98893 0.96911 1.19047 0.94770 0.93574 0.92263 0.95615 1.21327 1.18839 0.93086 1.22313 0.94626 1.25807 0.94829 1.02561 0.95066 1.70039 1.29048 1.26430 1.33539 0.85815 0.80569 0.78575 0.77306 1.19496 1.22506 1.17400 1.21817 0.90986 0.97129 0.94074 1.22646 0.90330 1.10231 0.93734 0.91745 0.92354 0.91044 0.92945 0.91844 0.86428 0.87845 0.75050 0.95232 0.88804 0.89850 0.96411 0.92215 0.90543 0.94621 0.93433 0.92551 0.96749 0.91440 0.79549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 71.98 0.71 -0.22 16 2 C -0.14 -1.37 6.26 30.59 0.19 -1.18 16 3 C 0.10 0.91 6.15 86.38 0.53 1.44 16 4 N -0.46 -7.93 2.75 -529.07 -1.46 -9.38 16 5 C 0.18 3.62 12.56 180.26 2.26 5.89 16 6 N -0.53 -15.14 10.09 -188.32 -1.90 -17.04 16 7 C -0.01 -0.40 5.83 41.39 0.24 -0.16 16 8 C 0.14 4.45 5.51 85.56 0.47 4.93 16 9 N -0.54 -19.96 4.65 -900.95 -4.19 -24.14 16 10 C 0.07 2.66 5.31 86.32 0.46 3.12 16 11 C -0.11 -4.17 6.09 30.65 0.19 -3.98 16 12 C -0.12 -5.44 4.73 30.68 0.15 -5.29 16 13 C 0.02 1.12 1.85 -11.49 -0.02 1.09 16 14 H 0.03 1.31 7.21 -2.39 -0.02 1.30 16 15 C -0.52 -30.55 9.15 25.60 0.23 -30.31 16 16 H 0.04 2.30 7.99 -2.91 -0.02 2.27 16 17 C 0.01 0.86 5.45 84.66 0.46 1.32 16 18 N -0.95 -60.90 13.96 21.45 0.30 -60.60 16 19 Si 0.95 47.07 24.35 68.60 1.67 48.74 16 20 H -0.27 -12.74 6.89 99.48 0.69 -12.05 16 21 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 22 H -0.25 -11.73 6.53 99.48 0.65 -11.08 16 23 C 0.09 3.75 4.68 86.32 0.40 4.15 16 24 C -0.03 -0.79 11.49 83.09 0.95 0.16 16 25 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.07 0.28 8.14 -2.38 -0.02 0.26 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.23 2.66 8.06 -2.91 -0.02 2.63 16 33 H 0.03 0.99 8.12 -2.39 -0.02 0.97 16 34 H 0.09 2.66 7.98 -2.39 -0.02 2.64 16 35 H 0.08 2.94 6.23 -2.39 -0.01 2.93 16 36 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 39 H 0.04 1.66 3.34 -2.39 -0.01 1.65 16 40 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 42 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 2.83 8.01 -2.38 -0.02 2.81 16 44 H 0.19 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -73.50 342.30 2.54 -70.97 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.87 Total: 10.52 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: 7.24 Total: -19.05 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -7.24 Total: -111.17 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.67 Total: 48.74 kcal Total: -73.50 2.54 -70.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232798810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.807 kcal (2) G-P(sol) polarization free energy of solvation -73.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds