Wall clock time and date at job start Mon Mar 30 2020 01:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47331 * 2 1 4 4 N 1.46496 * 109.47130 * 180.02562 * 3 2 1 5 5 C 1.35054 * 126.39961 * 270.12465 * 4 3 2 6 6 N 1.30496 * 108.69874 * 180.26437 * 5 4 3 7 7 C 1.34130 * 109.26014 * 359.77074 * 6 5 4 8 8 C 1.50698 * 125.99118 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.46829 * 274.99230 * 8 7 6 10 10 C 1.46850 * 111.00040 * 45.79706 * 9 8 7 11 11 C 1.53029 * 109.52509 * 185.83518 * 10 9 8 12 12 C 1.53118 * 109.27895 * 300.81797 * 11 10 9 13 13 C 1.50707 * 109.57576 * 177.58992 * 12 11 10 14 14 H 1.08001 * 119.99435 * 240.28595 * 13 12 11 15 15 C 1.37869 * 120.00018 * 60.28414 * 13 12 11 16 16 N 1.31515 * 119.99881 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00243 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46964 * 60.00040 * 17 15 13 19 19 H 1.48500 * 109.47444 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47062 * 300.00217 * 17 15 13 21 21 C 1.53117 * 109.16307 * 57.65406 * 12 11 10 22 22 C 1.46854 * 110.99623 * 169.99948 * 9 8 7 23 23 C 1.34674 * 108.01710 * 359.97438 * 7 6 5 24 24 H 1.09003 * 109.46961 * 299.99788 * 1 2 3 25 25 H 1.09001 * 109.47252 * 59.99131 * 1 2 3 26 26 H 1.08996 * 109.47585 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46536 * 240.00128 * 2 1 3 28 28 H 1.08997 * 109.47342 * 120.00388 * 2 1 3 29 29 H 1.09003 * 109.46925 * 60.00190 * 3 2 1 30 30 H 1.08997 * 109.47224 * 300.00460 * 3 2 1 31 31 H 1.07999 * 125.64439 * 359.97438 * 5 4 3 32 32 H 1.08997 * 109.47491 * 34.99508 * 8 7 6 33 33 H 1.08998 * 109.46837 * 154.99546 * 8 7 6 34 34 H 1.09000 * 109.45623 * 305.85324 * 10 9 8 35 35 H 1.08997 * 109.46850 * 65.81414 * 10 9 8 36 36 H 1.08995 * 109.50483 * 180.87205 * 11 10 9 37 37 H 1.09004 * 109.53436 * 60.77654 * 11 10 9 38 38 H 1.08993 * 109.52236 * 297.74863 * 12 11 10 39 39 H 0.97004 * 119.99974 * 179.97438 * 16 15 13 40 40 H 1.08991 * 109.50809 * 182.40572 * 21 12 11 41 41 H 1.09004 * 109.53396 * 62.30406 * 21 12 11 42 42 H 1.08999 * 109.45948 * 294.17618 * 22 9 8 43 43 H 1.08994 * 109.46185 * 54.15820 * 22 9 8 44 44 H 1.08002 * 126.58669 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3069 1.4399 1.0861 6 7 5.5499 1.4464 0.6888 7 6 5.5858 1.4483 -0.6520 8 6 6.8284 1.4549 -1.5046 9 7 7.2942 2.8370 -1.6805 10 6 7.2865 3.5615 -0.4031 11 6 7.6362 5.0312 -0.6467 12 6 9.0194 5.1207 -1.2972 13 6 9.3455 6.5618 -1.5942 14 1 9.5308 6.8750 -2.6110 15 6 9.4072 7.4802 -0.5678 16 7 9.1810 7.0989 0.6704 17 14 9.8106 9.2666 -0.9359 18 1 8.7881 9.8255 -1.8564 19 1 9.8147 10.0441 0.3293 20 1 11.1492 9.3506 -1.5733 21 6 9.0145 4.3181 -2.6012 22 6 8.6248 2.8689 -2.3010 23 6 4.3168 1.4421 -1.1027 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9744 1.4379 2.1136 32 1 7.6069 0.8684 -1.0168 33 1 6.6030 1.0207 -2.4786 34 1 6.2961 3.4935 0.0469 35 1 8.0218 3.1198 0.2694 36 1 7.6456 5.5653 0.3034 37 1 6.8935 5.4778 -1.3079 38 1 9.7678 4.7101 -0.6196 39 1 9.2247 7.7450 1.3926 40 1 10.0085 4.3426 -3.0474 41 1 8.2937 4.7526 -3.2939 42 1 9.3538 2.4305 -1.6195 43 1 8.6063 2.2981 -3.2293 44 1 4.0004 1.4421 -2.1354 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232799086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:27 Heat of formation + Delta-G solvation = 33.993162 kcal Electronic energy + Delta-G solvation = -21676.072321 eV Core-core repulsion = 18628.053879 eV Total energy + Delta-G solvation = -3048.018442 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.00879 -39.69640 -36.71816 -35.69617 -33.61032 -32.68857 -31.41260 -30.79396 -28.30557 -27.18184 -25.70908 -23.75912 -23.17861 -22.92387 -21.71330 -20.87992 -20.27530 -18.43440 -17.95414 -17.03486 -16.42515 -16.13390 -15.82265 -15.72581 -15.46890 -14.97815 -14.73866 -14.62103 -14.34417 -14.26242 -13.94033 -13.36299 -13.12798 -13.11072 -12.98173 -12.82011 -12.74097 -12.51702 -12.28505 -12.22638 -11.96968 -11.84345 -11.73142 -11.34501 -10.84140 -10.78684 -10.65326 -10.40092 -10.30844 -9.40458 -9.03847 -8.05717 -6.20601 1.17950 1.40952 1.43565 1.51038 1.97205 2.13340 2.44715 3.19769 3.30385 3.71712 3.78040 3.91327 4.04198 4.17113 4.29193 4.32867 4.36948 4.40564 4.44771 4.55763 4.60637 4.63168 4.74919 4.84296 4.84883 4.93367 4.99805 5.06403 5.11200 5.13463 5.16539 5.26265 5.34957 5.38214 5.41606 5.59465 5.63218 5.81162 6.00017 6.04366 6.30111 6.38180 6.41035 6.41161 6.91717 7.24242 7.47097 8.98794 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025550 B = 0.003602 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.620510 B = 7772.425088 C = 8348.398651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.101 3.899 4 N -0.456 5.456 5 C 0.177 3.823 6 N -0.535 5.535 7 C -0.025 4.025 8 C 0.139 3.861 9 N -0.532 5.532 10 C 0.090 3.910 11 C -0.091 4.091 12 C 0.044 3.956 13 C -0.533 4.533 14 H 0.055 0.945 15 C 0.007 3.993 16 N -0.921 5.921 17 Si 0.957 3.043 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.270 1.270 21 C -0.098 4.098 22 C 0.064 3.936 23 C -0.029 4.029 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.228 0.772 32 H 0.026 0.974 33 H 0.110 0.890 34 H 0.062 0.938 35 H -0.005 1.005 36 H 0.053 0.947 37 H 0.027 0.973 38 H -0.018 1.018 39 H 0.259 0.741 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.014 0.986 43 H 0.097 0.903 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.265 -15.252 -2.878 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.020 4.020 4 N -0.138 5.138 5 C -0.106 4.106 6 N -0.255 5.255 7 C -0.153 4.153 8 C 0.011 3.989 9 N -0.258 5.258 10 C -0.038 4.038 11 C -0.130 4.130 12 C 0.025 3.975 13 C -0.571 4.571 14 H 0.073 0.927 15 C -0.191 4.191 16 N -0.560 5.560 17 Si 0.783 3.217 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.136 4.136 22 C -0.063 4.063 23 C -0.164 4.164 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.244 0.756 32 H 0.045 0.955 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.013 0.987 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.000 1.000 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.033 0.967 43 H 0.115 0.885 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -18.067 -14.945 -2.512 23.581 hybrid contribution 0.451 0.695 0.469 0.952 sum -17.616 -14.250 -2.043 22.750 Atomic orbital electron populations 1.21682 0.93102 1.02796 1.02885 1.21832 0.97623 0.94817 1.02733 1.22252 0.74286 0.99344 1.06160 1.45737 1.08549 1.53527 1.06021 1.25416 0.84935 1.05210 0.95060 1.70159 1.21739 1.20859 1.12699 1.20548 0.94822 1.09516 0.90394 1.20382 0.91612 0.88850 0.98046 1.62169 1.25923 1.13593 1.24067 1.21798 0.98625 0.94194 0.89197 1.21406 0.97635 0.93339 1.00591 1.18657 0.92392 0.93948 0.92469 1.21574 1.47196 0.94853 0.93473 0.92708 1.25837 0.95196 1.03120 0.94907 1.70062 1.50488 1.35609 0.99880 0.85625 0.78991 0.79749 0.77365 1.19504 1.21030 1.19474 1.21533 0.99761 0.94098 0.98170 1.22096 0.88035 0.97370 0.98815 1.22714 0.90014 1.09810 0.93856 0.91596 0.91762 0.91828 0.91978 0.91753 0.87270 0.87919 0.75556 0.95547 0.87238 0.92010 0.98710 0.92807 0.95368 1.00032 0.93187 0.92469 0.92607 0.96735 0.88467 0.78655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 71.98 0.71 -0.23 16 2 C -0.13 -1.27 6.26 30.59 0.19 -1.08 16 3 C 0.10 1.15 6.15 86.38 0.53 1.68 16 4 N -0.46 -9.39 2.75 -529.07 -1.46 -10.84 16 5 C 0.18 4.43 12.56 180.26 2.26 6.69 16 6 N -0.54 -18.26 9.99 -188.31 -1.88 -20.15 16 7 C -0.03 -0.80 5.03 41.39 0.21 -0.59 16 8 C 0.14 4.47 5.82 85.56 0.50 4.97 16 9 N -0.53 -20.72 4.80 -900.94 -4.32 -25.04 16 10 C 0.09 4.18 4.89 86.32 0.42 4.60 16 11 C -0.09 -4.89 5.12 30.64 0.16 -4.73 16 12 C 0.04 2.40 2.16 -11.46 -0.02 2.38 16 13 C -0.53 -31.21 8.56 25.60 0.22 -30.99 16 14 H 0.05 3.11 7.74 -2.91 -0.02 3.08 16 15 C 0.01 0.43 5.31 84.65 0.45 0.88 16 16 N -0.92 -56.65 11.37 21.44 0.24 -56.40 16 17 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 C -0.10 -4.34 5.32 30.65 0.16 -4.18 16 22 C 0.06 2.44 5.42 86.33 0.47 2.91 16 23 C -0.03 -0.72 11.49 83.09 0.95 0.24 16 24 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.23 3.94 8.06 -2.91 -0.02 3.92 16 32 H 0.03 0.91 8.08 -2.39 -0.02 0.89 16 33 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.06 2.86 5.79 -2.39 -0.01 2.85 16 35 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.05 3.24 6.17 -2.39 -0.01 3.22 16 37 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 38 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 39 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.06 2.46 8.14 -2.39 -0.02 2.45 16 42 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.10 2.94 8.12 -2.39 -0.02 2.92 16 44 H 0.20 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -73.70 348.10 2.77 -70.94 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.94 Total: 11.35 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 7.22 Total: -17.44 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -7.42 Total: -112.43 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -73.70 2.77 -70.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232799086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.931 kcal (2) G-P(sol) polarization free energy of solvation -73.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds