Wall clock time and date at job start Mon Mar 30 2020 01:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47626 * 2 1 4 4 C 1.52992 * 109.47292 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47248 * 179.30122 * 4 3 2 6 6 C 1.46898 * 110.99889 * 287.83479 * 5 4 3 7 7 C 1.50694 * 109.47326 * 299.00962 * 6 5 4 8 8 H 1.08004 * 119.99587 * 4.72001 * 7 6 5 9 9 C 1.37877 * 120.00528 * 184.72086 * 7 6 5 10 10 N 1.31513 * 119.99712 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00300 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47015 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47264 * 119.99639 * 11 9 7 14 14 H 1.48498 * 109.46957 * 239.99915 * 11 9 7 15 15 C 1.46904 * 111.00304 * 163.87796 * 5 4 3 16 16 C 1.50702 * 109.47137 * 189.99969 * 15 5 4 17 17 N 1.31793 * 119.12180 * 269.73071 * 16 15 5 18 18 C 1.32338 * 120.81547 * 179.76180 * 17 16 15 19 19 C 1.50705 * 120.44600 * 180.23681 * 18 17 16 20 20 C 1.38592 * 119.10225 * 0.50363 * 18 17 16 21 21 C 1.38591 * 118.40461 * 359.75027 * 20 18 17 22 22 C 1.50699 * 120.45165 * 179.97438 * 21 20 18 23 23 N 1.31796 * 119.11907 * 90.00070 * 16 15 5 24 24 H 1.09002 * 109.46947 * 59.99933 * 1 2 3 25 25 H 1.09000 * 109.47318 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47160 * 300.00827 * 1 2 3 27 27 H 1.08994 * 109.47440 * 239.99632 * 2 1 3 28 28 H 1.09002 * 109.46947 * 120.00067 * 2 1 3 29 29 H 1.08994 * 109.47011 * 59.99369 * 3 2 1 30 30 H 1.09002 * 109.47012 * 300.00027 * 3 2 1 31 31 H 1.08994 * 109.47535 * 59.29840 * 4 3 2 32 32 H 1.09002 * 109.47527 * 299.29779 * 4 3 2 33 33 H 1.09003 * 109.47176 * 59.01300 * 6 5 4 34 34 H 1.08998 * 109.47330 * 179.01205 * 6 5 4 35 35 H 0.97005 * 120.00042 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.46656 * 69.99891 * 15 5 4 37 37 H 1.08995 * 109.46959 * 310.00017 * 15 5 4 38 38 H 1.08996 * 109.46672 * 270.27204 * 19 18 17 39 39 H 1.09004 * 109.47180 * 30.27001 * 19 18 17 40 40 H 1.08997 * 109.47097 * 150.26958 * 19 18 17 41 41 H 1.08005 * 120.79806 * 179.77478 * 20 18 17 42 42 H 1.08997 * 109.47131 * 270.02544 * 22 21 20 43 43 H 1.09000 * 109.47027 * 30.02148 * 22 21 20 44 44 H 1.09003 * 109.47461 * 150.02510 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0598 2.8272 -0.0162 6 6 3.8399 3.4474 -1.3296 7 6 4.5943 2.6764 -2.3819 8 1 5.1162 1.7690 -2.1161 9 6 4.6182 3.1293 -3.6839 10 7 3.9823 4.2340 -4.0077 11 14 5.5528 2.1731 -4.9884 12 1 6.1773 0.9752 -4.3718 13 1 4.6143 1.7476 -6.0578 14 1 6.6102 3.0367 -5.5726 15 6 5.4773 2.8891 0.3644 16 6 5.8787 4.3263 0.5749 17 7 6.3492 5.0167 -0.4444 18 6 6.7073 6.2823 -0.2985 19 6 7.2394 7.0655 -1.4710 20 6 6.5918 6.8761 0.9484 21 6 6.0977 6.1165 1.9971 22 6 5.9532 6.7155 3.3723 23 7 5.7549 4.8577 1.7746 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9337 0.9176 -0.8827 32 1 3.9330 0.9396 0.8971 33 1 2.7753 3.4352 -1.5635 34 1 4.1956 4.4775 -1.3092 35 1 3.9988 4.5524 -4.9238 36 1 6.0857 2.4542 -0.4285 37 1 5.6302 2.3302 1.2876 38 1 8.3223 6.9529 -1.5217 39 1 6.7916 6.6907 -2.3915 40 1 6.9888 8.1191 -1.3479 41 1 6.8794 7.9061 1.0992 42 1 6.8733 6.5590 3.9353 43 1 5.7585 7.7844 3.2844 44 1 5.1234 6.2365 3.8920 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248966603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:35 Heat of formation + Delta-G solvation = 31.324206 kcal Electronic energy + Delta-G solvation = -22047.408970 eV Core-core repulsion = 18999.274793 eV Total energy + Delta-G solvation = -3048.134176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63075 -37.19142 -34.40260 -34.28841 -32.96823 -32.09962 -28.99943 -28.70557 -27.56194 -27.03578 -25.15301 -23.23525 -21.94320 -21.27907 -20.47898 -19.48246 -17.21977 -16.35216 -15.38194 -15.30206 -15.05885 -14.71061 -14.43684 -14.14094 -13.63460 -13.42380 -13.23811 -12.92173 -12.71468 -12.48104 -12.30066 -12.11444 -12.07605 -11.91203 -11.81350 -11.16382 -10.96214 -10.88915 -10.69181 -10.50721 -10.47298 -10.37565 -9.97801 -9.88610 -9.80020 -9.69003 -9.45708 -8.87167 -8.58846 -8.28646 -7.12775 -5.90296 -3.95659 1.38756 1.60034 3.32900 3.40647 3.43825 4.12130 4.40781 4.50507 4.54988 4.75607 5.11583 5.31476 5.40822 5.42302 5.43193 5.50538 5.57589 5.58052 5.61325 5.68779 5.82518 5.87096 5.92490 5.99202 6.04768 6.16969 6.20023 6.24425 6.30730 6.37908 6.40890 6.52516 6.57297 6.64381 6.94743 6.96774 7.00507 7.34434 7.62847 7.66366 8.01203 8.10788 8.33038 8.39737 8.78948 9.10237 9.68469 11.15984 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.006985 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.445501 B = 4007.402564 C = 5998.732715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.109 4.109 4 C 0.062 3.938 5 N -0.537 5.537 6 C 0.185 3.815 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.070 3.930 10 N -0.890 5.890 11 Si 0.883 3.117 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.127 3.873 16 C 0.354 3.646 17 N -0.483 5.483 18 C 0.176 3.824 19 C -0.105 4.105 20 C -0.246 4.246 21 C 0.164 3.836 22 C -0.100 4.100 23 N -0.517 5.517 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.026 0.974 34 H 0.039 0.961 35 H 0.258 0.742 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.136 0.864 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 2.396 10.687 11.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.147 4.147 4 C -0.066 4.066 5 N -0.261 5.261 6 C 0.060 3.940 7 C -0.569 4.569 8 H 0.072 0.928 9 C -0.132 4.132 10 N -0.530 5.530 11 Si 0.712 3.288 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.211 1.211 15 C -0.003 4.003 16 C 0.086 3.914 17 N -0.198 5.198 18 C 0.029 3.971 19 C -0.163 4.163 20 C -0.269 4.269 21 C 0.017 3.983 22 C -0.158 4.158 23 N -0.233 5.233 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.154 0.846 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.119 1.837 10.747 11.107 hybrid contribution 1.202 0.109 -1.444 1.882 sum 3.321 1.946 9.303 10.068 Atomic orbital electron populations 1.21749 0.96463 1.00734 1.01706 1.21476 0.95281 0.97780 1.01406 1.21496 0.95539 0.95302 1.02342 1.21935 0.94880 0.89942 0.99820 1.62498 1.13539 1.17035 1.33061 1.19830 0.96513 0.95497 0.82175 1.21571 1.32153 1.09202 0.94010 0.92765 1.24835 0.95276 0.94750 0.98335 1.69959 1.42883 1.21670 1.18445 0.86686 0.79874 0.80145 0.82118 1.20000 1.21271 1.21129 1.20614 0.92200 0.87098 1.00405 1.23142 0.88293 0.96993 0.82964 1.68379 1.11114 1.06878 1.33425 1.21759 0.90525 0.90785 0.94074 1.20742 1.01073 0.98156 0.96281 1.22439 1.07094 1.02413 0.94915 1.21609 0.90703 0.89819 0.96151 1.20687 1.03346 1.00212 0.91508 1.68099 1.17805 1.12244 1.25190 0.92742 0.93450 0.93087 0.92168 0.92723 0.92441 0.91349 0.93233 0.93239 0.95600 0.94302 0.93255 0.91208 0.90637 0.90409 0.89230 0.90846 0.84602 0.90379 0.90710 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.79 5.93 -26.73 -0.16 -1.95 16 3 C -0.11 -1.95 5.28 -26.73 -0.14 -2.09 16 4 C 0.06 1.22 4.80 -3.83 -0.02 1.21 16 5 N -0.54 -11.98 4.66 -237.53 -1.11 -13.08 16 6 C 0.19 4.87 4.74 -4.98 -0.02 4.84 16 7 C -0.53 -14.57 7.34 -34.44 -0.25 -14.82 16 8 H 0.05 1.48 5.95 -52.48 -0.31 1.17 16 9 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 10 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 11 Si 0.88 21.79 29.54 -169.99 -5.02 16.77 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 C 0.13 2.67 5.22 -4.97 -0.03 2.64 16 16 C 0.35 7.52 6.41 -157.19 -1.01 6.51 16 17 N -0.48 -10.58 9.13 -6.99 -0.06 -10.64 16 18 C 0.18 3.18 6.82 -82.24 -0.56 2.62 16 19 C -0.11 -1.56 10.22 36.01 0.37 -1.19 16 20 C -0.25 -3.78 9.54 -39.32 -0.38 -4.15 16 21 C 0.16 2.63 6.82 -82.24 -0.56 2.06 16 22 C -0.10 -1.11 10.22 36.00 0.37 -0.75 16 23 N -0.52 -9.99 10.27 -6.99 -0.07 -10.06 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.40 6.73 -51.93 -0.35 1.05 16 31 H 0.05 1.06 6.15 -51.93 -0.32 0.74 16 32 H 0.05 0.86 7.81 -51.93 -0.41 0.46 16 33 H 0.03 0.73 6.66 -51.93 -0.35 0.39 16 34 H 0.04 1.13 6.40 -51.93 -0.33 0.80 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.07 1.58 6.59 -51.93 -0.34 1.24 16 37 H 0.08 1.41 7.86 -51.93 -0.41 1.01 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 41 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 355.04 15.07 5.35 5.35 Total: -1.00 -31.69 355.04 -9.74 -41.43 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.44 Total: 0.60 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -2.12 Total: -4.77 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.51 Total: -59.38 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.69 -9.74 -41.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248966603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.753 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds