Wall clock time and date at job start Mon Mar 30 2020 01:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47626 * 2 1 4 4 C 1.52992 * 109.47292 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47248 * 179.30122 * 4 3 2 6 6 C 1.46898 * 110.99889 * 287.83479 * 5 4 3 7 7 C 1.50694 * 109.47326 * 299.00962 * 6 5 4 8 8 H 1.08004 * 119.99587 * 4.72001 * 7 6 5 9 9 C 1.37877 * 120.00528 * 184.72086 * 7 6 5 10 10 N 1.31513 * 119.99712 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00300 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47015 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47264 * 119.99639 * 11 9 7 14 14 H 1.48498 * 109.46957 * 239.99915 * 11 9 7 15 15 C 1.46904 * 111.00304 * 163.87796 * 5 4 3 16 16 C 1.50702 * 109.47137 * 189.99969 * 15 5 4 17 17 N 1.31793 * 119.12180 * 269.73071 * 16 15 5 18 18 C 1.32338 * 120.81547 * 179.76180 * 17 16 15 19 19 C 1.50705 * 120.44600 * 180.23681 * 18 17 16 20 20 C 1.38592 * 119.10225 * 0.50363 * 18 17 16 21 21 C 1.38591 * 118.40461 * 359.75027 * 20 18 17 22 22 C 1.50699 * 120.45165 * 179.97438 * 21 20 18 23 23 N 1.31796 * 119.11907 * 90.00070 * 16 15 5 24 24 H 1.09002 * 109.46947 * 59.99933 * 1 2 3 25 25 H 1.09000 * 109.47318 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47160 * 300.00827 * 1 2 3 27 27 H 1.08994 * 109.47440 * 239.99632 * 2 1 3 28 28 H 1.09002 * 109.46947 * 120.00067 * 2 1 3 29 29 H 1.08994 * 109.47011 * 59.99369 * 3 2 1 30 30 H 1.09002 * 109.47012 * 300.00027 * 3 2 1 31 31 H 1.08994 * 109.47535 * 59.29840 * 4 3 2 32 32 H 1.09002 * 109.47527 * 299.29779 * 4 3 2 33 33 H 1.09003 * 109.47176 * 59.01300 * 6 5 4 34 34 H 1.08998 * 109.47330 * 179.01205 * 6 5 4 35 35 H 0.97005 * 120.00042 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.46656 * 69.99891 * 15 5 4 37 37 H 1.08995 * 109.46959 * 310.00017 * 15 5 4 38 38 H 1.08996 * 109.46672 * 270.27204 * 19 18 17 39 39 H 1.09004 * 109.47180 * 30.27001 * 19 18 17 40 40 H 1.08997 * 109.47097 * 150.26958 * 19 18 17 41 41 H 1.08005 * 120.79806 * 179.77478 * 20 18 17 42 42 H 1.08997 * 109.47131 * 270.02544 * 22 21 20 43 43 H 1.09000 * 109.47027 * 30.02148 * 22 21 20 44 44 H 1.09003 * 109.47461 * 150.02510 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0598 2.8272 -0.0162 6 6 3.8399 3.4474 -1.3296 7 6 4.5943 2.6764 -2.3819 8 1 5.1162 1.7690 -2.1161 9 6 4.6182 3.1293 -3.6839 10 7 3.9823 4.2340 -4.0077 11 14 5.5528 2.1731 -4.9884 12 1 6.1773 0.9752 -4.3718 13 1 4.6143 1.7476 -6.0578 14 1 6.6102 3.0367 -5.5726 15 6 5.4773 2.8891 0.3644 16 6 5.8787 4.3263 0.5749 17 7 6.3492 5.0167 -0.4444 18 6 6.7073 6.2823 -0.2985 19 6 7.2394 7.0655 -1.4710 20 6 6.5918 6.8761 0.9484 21 6 6.0977 6.1165 1.9971 22 6 5.9532 6.7155 3.3723 23 7 5.7549 4.8577 1.7746 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9337 0.9176 -0.8827 32 1 3.9330 0.9396 0.8971 33 1 2.7753 3.4352 -1.5635 34 1 4.1956 4.4775 -1.3092 35 1 3.9988 4.5524 -4.9238 36 1 6.0857 2.4542 -0.4285 37 1 5.6302 2.3302 1.2876 38 1 8.3223 6.9529 -1.5217 39 1 6.7916 6.6907 -2.3915 40 1 6.9888 8.1191 -1.3479 41 1 6.8794 7.9061 1.0992 42 1 6.8733 6.5590 3.9353 43 1 5.7585 7.7844 3.2844 44 1 5.1234 6.2365 3.8920 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248966603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:34 Heat of formation + Delta-G solvation = 11.135778 kcal Electronic energy + Delta-G solvation = -22048.284406 eV Core-core repulsion = 18999.274793 eV Total energy + Delta-G solvation = -3049.009612 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.00998 -38.91589 -35.75575 -35.61236 -34.71364 -33.84572 -30.23605 -30.10339 -29.41561 -28.27388 -26.84282 -25.10922 -23.31719 -22.53693 -21.85754 -21.29768 -18.64531 -18.42437 -17.03366 -16.79380 -16.51090 -16.23244 -16.00944 -15.65189 -15.26579 -14.82418 -14.31619 -14.27505 -14.10417 -13.88631 -13.73377 -13.48398 -13.25210 -13.16172 -13.07801 -12.95740 -12.82123 -12.64736 -12.41042 -12.10264 -12.01633 -11.82776 -11.71721 -11.59350 -11.37035 -11.27664 -11.10576 -10.50323 -10.17892 -10.00709 -9.02167 -8.07326 -6.21414 0.02169 0.28205 1.34958 1.36303 1.46926 2.41240 2.70024 3.07193 3.20113 3.24682 3.52615 3.59870 4.09685 4.14075 4.19906 4.22900 4.34785 4.43283 4.49762 4.53979 4.56990 4.69855 4.71771 4.79491 4.81610 4.83348 4.89743 5.00648 5.03882 5.06189 5.12169 5.16689 5.21024 5.27593 5.34540 5.43054 5.50192 5.56345 5.66849 5.82565 6.10101 6.26284 6.30082 6.50996 6.93246 7.37389 7.46397 8.97184 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.006985 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.445501 B = 4007.402564 C = 5998.732715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.102 4.102 4 C 0.062 3.938 5 N -0.538 5.538 6 C 0.210 3.790 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.018 3.982 10 N -0.925 5.925 11 Si 0.948 3.052 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.282 1.282 15 C 0.132 3.868 16 C 0.328 3.672 17 N -0.532 5.532 18 C 0.148 3.852 19 C -0.099 4.099 20 C -0.230 4.230 21 C 0.153 3.847 22 C -0.094 4.094 23 N -0.533 5.533 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.028 0.972 32 H 0.079 0.921 33 H -0.005 1.005 34 H 0.008 0.992 35 H 0.259 0.741 36 H 0.045 0.955 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.108 0.892 41 H 0.183 0.817 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.466 2.745 12.447 13.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.140 4.140 4 C -0.065 4.065 5 N -0.262 5.262 6 C 0.083 3.917 7 C -0.569 4.569 8 H 0.070 0.930 9 C -0.180 4.180 10 N -0.565 5.565 11 Si 0.774 3.226 12 H -0.193 1.193 13 H -0.205 1.205 14 H -0.208 1.208 15 C 0.002 3.998 16 C 0.060 3.940 17 N -0.248 5.248 18 C 0.003 3.997 19 C -0.156 4.156 20 C -0.252 4.252 21 C 0.007 3.993 22 C -0.151 4.151 23 N -0.249 5.249 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.013 0.987 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.126 0.874 41 H 0.201 0.799 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.905 2.185 12.521 13.038 hybrid contribution 0.982 0.091 -1.890 2.132 sum 3.887 2.276 10.632 11.547 Atomic orbital electron populations 1.21729 0.94995 1.02131 1.01548 1.21438 0.96556 0.95278 1.02089 1.21433 0.94327 0.97435 1.00767 1.22046 0.95969 0.88368 1.00153 1.62433 1.14850 1.18519 1.30427 1.19323 0.94072 0.94177 0.84085 1.21733 1.31696 1.08967 0.94509 0.92992 1.25616 0.96217 0.95674 1.00530 1.70084 1.44285 1.23182 1.18957 0.85670 0.78611 0.78908 0.79434 1.19300 1.20544 1.20811 1.20569 0.90606 0.88249 1.00368 1.23007 0.89933 0.97139 0.83921 1.68291 1.12877 1.09111 1.34508 1.22380 0.90824 0.90126 0.96406 1.20790 1.01937 0.99422 0.93427 1.22881 1.04887 1.04162 0.93241 1.22523 0.89342 0.88829 0.98631 1.20828 1.04310 1.01492 0.88489 1.68101 1.18557 1.14161 1.24127 0.93976 0.91248 0.92240 0.92905 0.90544 0.91979 0.94865 0.95340 0.90289 0.98656 0.97409 0.93162 0.93664 0.88374 0.88332 0.92971 0.87371 0.79949 0.88127 0.87705 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.12 -3.31 5.93 30.59 0.18 -3.12 16 3 C -0.10 -3.70 5.28 30.59 0.16 -3.54 16 4 C 0.06 2.48 4.80 86.30 0.41 2.90 16 5 N -0.54 -24.89 4.66 -905.40 -4.22 -29.11 16 6 C 0.21 11.66 4.74 85.56 0.41 12.06 16 7 C -0.53 -30.38 7.34 25.60 0.19 -30.19 16 8 H 0.05 2.95 5.95 -2.91 -0.02 2.93 16 9 C 0.02 1.07 5.46 84.65 0.46 1.53 16 10 N -0.92 -56.80 13.29 21.45 0.28 -56.52 16 11 Si 0.95 45.83 29.54 68.60 2.03 47.85 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 15 C 0.13 5.73 5.22 85.56 0.45 6.18 16 16 C 0.33 14.32 6.41 138.75 0.89 15.21 16 17 N -0.53 -24.12 9.13 -176.02 -1.61 -25.73 16 18 C 0.15 5.33 6.82 42.57 0.29 5.62 16 19 C -0.10 -2.88 10.22 71.24 0.73 -2.15 16 20 C -0.23 -6.51 9.54 22.44 0.21 -6.29 16 21 C 0.15 4.59 6.82 42.57 0.29 4.88 16 22 C -0.09 -1.76 10.22 71.24 0.73 -1.03 16 23 N -0.53 -20.40 10.27 -176.02 -1.81 -22.21 16 24 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.03 1.42 6.73 -2.39 -0.02 1.41 16 31 H 0.03 1.25 6.15 -2.39 -0.01 1.24 16 32 H 0.08 2.67 7.81 -2.39 -0.02 2.65 16 33 H 0.00 -0.28 6.66 -2.39 -0.02 -0.29 16 34 H 0.01 0.48 6.40 -2.39 -0.02 0.47 16 35 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 36 H 0.05 2.15 6.59 -2.39 -0.02 2.14 16 37 H 0.10 3.69 7.86 -2.39 -0.02 3.68 16 38 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.11 2.32 8.10 -2.39 -0.02 2.30 16 41 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 42 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.10 1.35 8.10 -2.39 -0.02 1.33 16 44 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -73.29 355.04 1.75 -71.53 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.96 Total: 15.04 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 6.11 Total: -0.86 kcal Atomic # 7 Polarization: -126.22 SS G_CDS: -7.35 Total: -133.57 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -73.29 1.75 -71.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248966603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.670 kcal (2) G-P(sol) polarization free energy of solvation -73.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds