Wall clock time and date at job start Mon Mar 30 2020 01:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47166 * 2 1 4 4 H 1.08998 * 109.46505 * 304.99766 * 3 2 1 5 5 C 1.52997 * 109.47127 * 64.99895 * 3 2 1 6 6 C 1.50697 * 109.47239 * 185.00390 * 3 2 1 7 7 N 1.30838 * 125.89687 * 299.69044 * 6 3 2 8 8 N 1.40080 * 108.20719 * 179.85423 * 7 6 3 9 9 C 1.46506 * 126.04105 * 180.16881 * 8 7 6 10 10 C 1.34950 * 107.92575 * 0.41203 * 8 7 6 11 11 C 1.35319 * 107.74268 * 359.75711 * 10 8 7 12 12 C 1.50703 * 126.03805 * 180.02562 * 11 10 8 13 13 N 1.46907 * 109.46994 * 259.97254 * 12 11 10 14 14 C 1.47474 * 110.99736 * 265.97361 * 13 12 11 15 15 C 1.53521 * 87.93140 * 221.29536 * 14 13 12 16 16 C 1.50701 * 114.34231 * 139.68129 * 15 14 13 17 17 H 1.07992 * 120.00132 * 266.07961 * 16 15 14 18 18 C 1.37880 * 119.99588 * 86.08156 * 16 15 14 19 19 N 1.31510 * 119.99875 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99981 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.46967 * 90.00116 * 20 18 16 22 22 H 1.48509 * 109.46784 * 209.99977 * 20 18 16 23 23 H 1.48496 * 109.46980 * 329.99665 * 20 18 16 24 24 C 1.47479 * 110.99425 * 170.00196 * 13 12 11 25 25 H 1.08997 * 109.47108 * 60.00222 * 1 2 3 26 26 H 1.09002 * 109.46738 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46865 * 300.00077 * 1 2 3 28 28 H 1.09007 * 109.47132 * 239.99951 * 2 1 3 29 29 H 1.08996 * 109.47552 * 120.00073 * 2 1 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 31 31 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 32 32 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 33 33 H 1.09004 * 109.46959 * 270.28733 * 9 8 7 34 34 H 1.08997 * 109.47033 * 30.28858 * 9 8 7 35 35 H 1.08999 * 109.47238 * 150.29158 * 9 8 7 36 36 H 1.07995 * 126.13138 * 179.71643 * 10 8 7 37 37 H 1.08991 * 109.47109 * 19.97413 * 12 11 10 38 38 H 1.09002 * 109.47032 * 139.97861 * 12 11 10 39 39 H 1.09000 * 113.48318 * 336.05932 * 14 13 12 40 40 H 1.09000 * 113.47566 * 106.53247 * 14 13 12 41 41 H 1.08999 * 114.17239 * 272.38148 * 15 14 13 42 42 H 0.97000 * 120.00328 * 179.97438 * 19 18 16 43 43 H 1.09003 * 113.47475 * 253.46273 * 24 13 12 44 44 H 1.08997 * 113.48246 * 23.88046 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4444 -0.1239 7 7 4.3815 0.8938 0.7149 8 7 5.6813 1.1140 0.2412 9 6 6.9197 0.6605 0.8792 10 6 5.5915 1.8224 -0.9039 11 6 4.2793 2.0401 -1.1524 12 6 3.7125 2.7912 -2.3295 13 7 3.3627 4.1569 -1.9166 14 6 1.9446 4.2426 -1.5213 15 6 1.8768 5.5855 -2.2623 16 6 0.6069 5.7996 -3.0450 17 1 0.5682 5.5406 -4.0927 18 6 -0.5054 6.3263 -2.4234 19 7 -1.6135 6.5137 -3.1066 20 14 -0.4386 6.7737 -0.6110 21 1 0.0037 8.1837 -0.4652 22 1 -1.7879 6.6136 -0.0116 23 1 0.5213 5.8793 0.0845 24 6 3.0298 4.9932 -3.0849 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.9982 3.1544 1.3071 31 1 2.0699 1.5876 2.1491 32 1 0.5489 2.1253 1.3969 33 1 7.2701 1.4227 1.5752 34 1 6.7311 -0.2666 1.4205 35 1 7.6792 0.4880 0.1167 36 1 6.4187 2.1563 -1.5126 37 1 4.4550 2.8314 -3.1264 38 1 2.8195 2.2808 -2.6903 39 1 1.3214 3.4681 -1.9684 40 1 1.7985 4.3328 -0.4449 41 1 2.1579 6.4454 -1.6543 42 1 -2.3962 6.8838 -2.6692 43 1 3.8035 5.7197 -3.3335 44 1 2.6973 4.4189 -3.9495 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249402928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:22 Heat of formation + Delta-G solvation = 100.487602 kcal Electronic energy + Delta-G solvation = -22424.826645 eV Core-core repulsion = 19379.691618 eV Total energy + Delta-G solvation = -3045.135027 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.18956 -38.94973 -36.31834 -33.29124 -32.50002 -31.31566 -29.57210 -28.70665 -26.88968 -25.24383 -24.97231 -24.14742 -22.06612 -21.51040 -19.95183 -18.83636 -18.52253 -17.06879 -16.46470 -15.52085 -15.03387 -14.78805 -14.60163 -14.46609 -14.14154 -13.53364 -13.48606 -13.39949 -12.95692 -12.69829 -12.59515 -12.28743 -12.07162 -11.96314 -11.77085 -11.44746 -11.43628 -11.00084 -10.82546 -10.66447 -10.59050 -10.37453 -9.98156 -9.90218 -9.82939 -9.53404 -9.06660 -9.01283 -8.51752 -8.16766 -7.96363 -6.07342 -4.07166 2.04083 2.61497 2.96219 3.32586 3.41169 3.47139 4.45659 4.48917 4.80421 4.93549 5.01367 5.04556 5.08612 5.20173 5.21224 5.24933 5.37947 5.53293 5.58001 5.66781 5.73386 5.80797 5.91892 5.95952 5.98416 6.09995 6.15016 6.19662 6.21926 6.30131 6.32584 6.42000 6.49416 6.52730 6.58969 6.60119 6.85640 6.92083 7.08782 7.18353 7.41177 7.73396 7.92355 7.96260 8.52588 8.96035 9.56302 11.05207 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.005702 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.260391 B = 4909.103630 C = 5703.288528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C -0.018 4.018 4 H 0.096 0.904 5 C -0.142 4.142 6 C 0.099 3.901 7 N -0.299 5.299 8 N -0.386 5.386 9 C 0.108 3.892 10 C 0.056 3.944 11 C -0.207 4.207 12 C 0.095 3.905 13 N -0.478 5.478 14 C -0.007 4.007 15 C -0.002 4.002 16 C -0.509 4.509 17 H 0.074 0.926 18 C 0.075 3.925 19 N -0.900 5.900 20 Si 0.872 3.128 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.255 1.255 24 C 0.007 3.993 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.169 0.831 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.264 0.736 43 H 0.064 0.936 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.942 -12.790 6.629 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.038 4.038 4 H 0.114 0.886 5 C -0.200 4.200 6 C -0.068 4.068 7 N -0.121 5.121 8 N -0.168 5.168 9 C -0.034 4.034 10 C -0.089 4.089 11 C -0.219 4.219 12 C -0.035 4.035 13 N -0.200 5.200 14 C -0.136 4.136 15 C -0.021 4.021 16 C -0.547 4.547 17 H 0.092 0.908 18 C -0.127 4.127 19 N -0.537 5.537 20 Si 0.699 3.301 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.179 1.179 24 C -0.122 4.122 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.186 0.814 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.614 -13.285 8.247 20.733 hybrid contribution -0.477 0.389 -0.376 0.721 sum 13.136 -12.896 7.871 20.021 Atomic orbital electron populations 1.21844 0.95485 1.01377 1.02530 1.21508 0.95855 0.95559 1.01944 1.19831 0.86496 0.97062 1.00445 0.88563 1.21835 1.01299 1.00745 0.96079 1.22124 0.95962 0.96257 0.92485 1.77204 0.86743 1.25555 1.22550 1.48271 1.05692 1.43771 1.19060 1.21727 0.82074 1.01051 0.98537 1.22192 0.98499 0.97782 0.90457 1.19883 0.91857 1.08453 1.01679 1.20867 0.99176 0.90622 0.92814 1.68907 1.21599 1.07431 1.22055 1.24447 0.87548 1.01163 1.00410 1.20521 0.94486 0.92729 0.94387 1.20924 0.93790 1.42259 0.97730 0.90828 1.24987 0.95264 0.94551 0.97926 1.69908 1.02437 1.44809 1.36587 0.86923 0.77576 0.79550 0.86032 1.20405 1.21527 1.17942 1.23796 0.98293 0.96564 0.93507 0.92198 0.92966 0.92322 0.92307 0.91862 0.92285 0.92630 0.91910 0.91210 0.89741 0.89873 0.81421 0.91373 0.93303 0.91795 0.91858 0.92790 0.92658 0.91733 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.67 37.16 0.36 -1.52 16 2 C -0.11 -1.47 5.38 -26.73 -0.14 -1.61 16 3 C -0.02 -0.28 2.48 -91.77 -0.23 -0.51 16 4 H 0.10 1.60 4.45 -51.93 -0.23 1.37 16 5 C -0.14 -2.15 8.83 37.16 0.33 -1.82 16 6 C 0.10 1.60 5.73 -82.41 -0.47 1.13 16 7 N -0.30 -4.78 12.58 33.67 0.42 -4.35 16 8 N -0.39 -5.14 4.01 -68.16 -0.27 -5.42 16 9 C 0.11 0.88 11.47 59.85 0.69 1.57 16 10 C 0.06 0.76 11.40 -17.22 -0.20 0.57 16 11 C -0.21 -3.30 5.68 -105.05 -0.60 -3.89 16 12 C 0.09 1.56 4.88 -4.97 -0.02 1.53 16 13 N -0.48 -9.14 6.32 -246.07 -1.55 -10.69 16 14 C -0.01 -0.14 5.10 -7.54 -0.04 -0.18 16 15 C 0.00 -0.04 2.95 -91.23 -0.27 -0.31 16 16 C -0.51 -13.94 9.38 -34.44 -0.32 -14.26 16 17 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 19 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 20 Si 0.87 21.26 27.14 -169.99 -4.61 16.64 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.26 -5.93 5.68 56.52 0.32 -5.61 16 24 C 0.01 0.14 7.24 -7.54 -0.05 0.09 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.69 6.56 -51.93 -0.34 0.35 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.99 7.13 -51.93 -0.37 0.62 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.87 6.57 -51.93 -0.34 0.53 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 38 H 0.05 0.82 6.85 -51.93 -0.36 0.47 16 39 H 0.06 1.36 6.19 -51.93 -0.32 1.04 16 40 H 0.06 1.37 5.98 -51.93 -0.31 1.06 16 41 H 0.05 1.29 7.04 -51.93 -0.37 0.93 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.19 7.87 -51.93 -0.41 0.78 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -31.61 343.98 -8.46 -40.08 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.33 Total: 2.03 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -1.07 Total: -17.20 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.63 Total: -46.73 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.61 Total: 16.64 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.61 -8.46 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249402928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.564 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds