Wall clock time and date at job start Mon Mar 30 2020 02:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00140 * 2 1 4 4 H 1.48503 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46976 * 300.00192 * 3 2 1 6 6 H 1.48504 * 109.47384 * 59.99943 * 3 2 1 7 7 C 1.37878 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00252 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99332 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46703 * 174.99298 * 9 7 2 11 11 C 1.46904 * 111.00163 * 303.90550 * 10 9 7 12 12 C 1.55235 * 110.57964 * 322.04896 * 11 10 9 13 13 C 1.54884 * 102.58685 * 203.33636 * 12 11 10 14 14 C 1.54270 * 104.31544 * 37.93116 * 13 12 11 15 15 C 1.53876 * 106.59585 * 336.32762 * 14 13 12 16 16 C 1.46901 * 111.00232 * 67.86235 * 10 9 7 17 17 C 1.52938 * 109.41266 * 181.68673 * 16 10 9 18 18 C 1.53194 * 109.44755 * 176.83946 * 17 16 10 19 19 C 1.53156 * 108.82317 * 56.67425 * 18 17 16 20 20 C 1.52843 * 117.67579 * 91.45942 * 19 18 17 21 21 C 1.52811 * 117.74548 * 160.33764 * 19 18 17 22 22 C 1.53150 * 115.00751 * 306.01868 * 19 18 17 23 23 C 1.52934 * 109.40967 * 61.39991 * 16 10 9 24 24 H 0.96997 * 119.99703 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47667 * 54.99453 * 9 7 2 26 26 H 1.09005 * 109.47276 * 294.98932 * 9 7 2 27 27 H 1.08998 * 110.43146 * 84.63562 * 11 10 9 28 28 H 1.08998 * 110.89946 * 85.04896 * 12 11 10 29 29 H 1.08999 * 110.76702 * 321.56657 * 12 11 10 30 30 H 1.09003 * 110.48710 * 279.19087 * 13 12 11 31 31 H 1.09003 * 110.49102 * 156.67840 * 13 12 11 32 32 H 1.09006 * 110.02929 * 95.60749 * 14 13 12 33 33 H 1.08997 * 110.03319 * 216.98927 * 14 13 12 34 34 H 1.08993 * 110.03204 * 119.28300 * 15 14 13 35 35 H 1.08998 * 110.02884 * 240.66666 * 15 14 13 36 36 H 1.08993 * 109.41054 * 301.54608 * 16 10 9 37 37 H 1.08999 * 109.47547 * 296.90903 * 17 16 10 38 38 H 1.08996 * 109.47655 * 56.91824 * 17 16 10 39 39 H 1.08996 * 109.62741 * 296.85309 * 18 17 16 40 40 H 1.08995 * 109.56217 * 176.45681 * 18 17 16 41 41 H 1.09006 * 117.50372 * 215.21717 * 20 19 18 42 42 H 1.08999 * 117.50592 * 0.27148 * 20 19 18 43 43 H 1.08998 * 117.49933 * 359.84921 * 21 19 18 44 44 H 1.08998 * 117.50034 * 144.88781 * 21 19 18 45 45 H 1.08998 * 109.56967 * 294.12358 * 22 19 18 46 46 H 1.08997 * 109.66438 * 173.82009 * 22 19 18 47 47 H 1.09003 * 109.47555 * 303.08046 * 23 16 10 48 48 H 1.09003 * 109.48007 * 63.09451 * 23 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2011 -3.6130 -0.1197 11 6 3.0367 -3.4652 -1.3189 12 6 2.2029 -2.8961 -2.4982 13 6 3.0023 -3.3710 -3.7369 14 6 3.4885 -4.7852 -3.3579 15 6 3.5103 -4.8451 -1.8204 16 6 3.0294 -3.7313 1.0877 17 6 4.0314 -4.8725 0.9071 18 6 4.9474 -4.9458 2.1328 19 6 4.0835 -5.1167 3.3858 20 6 3.7832 -6.5410 3.8521 21 6 4.7558 -5.6643 4.6441 22 6 2.9863 -4.0633 3.5644 23 6 2.1326 -4.0164 2.2933 24 1 -0.4849 0.8400 -0.0004 25 1 0.5591 -2.5192 -0.8414 26 1 0.6930 -2.5965 0.9318 27 1 3.8911 -2.8213 -1.1104 28 1 2.1644 -1.8075 -2.4575 29 1 1.1985 -3.3194 -2.5011 30 1 3.8511 -2.7119 -3.9189 31 1 2.3572 -3.4119 -4.6146 32 1 2.8010 -5.5342 -3.7510 33 1 4.4901 -4.9541 -3.7531 34 1 2.8335 -5.6231 -1.4674 35 1 4.5227 -5.0435 -1.4689 36 1 3.5685 -2.7980 1.2500 37 1 3.4937 -5.8142 0.7970 38 1 4.6323 -4.6908 0.0160 39 1 5.5275 -4.0263 2.2119 40 1 5.6209 -5.7971 2.0347 41 1 2.8040 -6.7308 4.2919 42 1 4.2042 -7.3606 3.2699 43 1 5.8166 -5.9072 4.5829 44 1 4.4165 -5.2773 5.6050 45 1 3.4412 -3.0876 3.7348 46 1 2.3592 -4.3276 4.4158 47 1 1.3863 -3.2274 2.3858 48 1 1.6327 -4.9752 2.1557 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254443664.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:24 Heat of formation + Delta-G solvation = 7.995477 kcal Electronic energy + Delta-G solvation = -23442.742554 eV Core-core repulsion = 20497.137111 eV Total energy + Delta-G solvation = -2945.605443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.53992 -37.98572 -35.33699 -33.20867 -31.68255 -30.73203 -28.36590 -27.12176 -26.65682 -24.73593 -22.77509 -22.28777 -21.77482 -19.98502 -19.66498 -18.78649 -18.20399 -16.24725 -15.66795 -15.14782 -14.89172 -14.80085 -14.60171 -13.83111 -13.45099 -13.25657 -13.11126 -12.71887 -12.47243 -12.17889 -11.92621 -11.68194 -11.57432 -11.44974 -11.16225 -10.97003 -10.92869 -10.65094 -10.58120 -10.46853 -10.32779 -10.15440 -10.07368 -9.91826 -9.84817 -9.71810 -9.66713 -9.44903 -9.22839 -9.12261 -8.36470 -7.06951 -5.98427 -4.05788 3.26723 3.35657 3.38710 3.92825 4.42912 4.79185 4.89128 4.97172 5.12533 5.20715 5.24861 5.30979 5.32491 5.45057 5.54364 5.71627 5.72767 5.81059 5.92160 5.97328 5.98632 6.01097 6.10648 6.13760 6.18014 6.20222 6.23203 6.27934 6.34950 6.40887 6.43062 6.45244 6.48656 6.57368 6.62940 6.66633 6.80152 6.83576 6.97305 7.04994 7.13996 7.21917 7.40119 7.63011 7.96828 8.19048 8.37867 8.47891 9.04871 9.59497 11.05843 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.013130 B = 0.007065 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.054352 B = 3962.146528 C = 5447.851103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.182 3.818 10 N -0.533 5.533 11 C 0.100 3.900 12 C -0.108 4.108 13 C -0.128 4.128 14 C -0.122 4.122 15 C -0.121 4.121 16 C 0.096 3.904 17 C -0.121 4.121 18 C -0.079 4.079 19 C -0.111 4.111 20 C -0.174 4.174 21 C -0.185 4.185 22 C -0.079 4.079 23 C -0.105 4.105 24 H 0.260 0.740 25 H 0.038 0.962 26 H 0.030 0.970 27 H 0.039 0.961 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.924 -10.772 1.883 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.576 4.576 8 H 0.072 0.928 9 C 0.056 3.944 10 N -0.257 5.257 11 C -0.009 4.009 12 C -0.146 4.146 13 C -0.166 4.166 14 C -0.160 4.160 15 C -0.158 4.158 16 C -0.013 4.013 17 C -0.158 4.158 18 C -0.117 4.117 19 C -0.111 4.111 20 C -0.211 4.211 21 C -0.222 4.222 22 C -0.117 4.117 23 C -0.142 4.142 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.093 0.907 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.480 -11.091 1.832 13.502 hybrid contribution 0.943 1.813 0.187 2.052 sum 8.423 -9.278 2.019 12.693 Atomic orbital electron populations 1.69945 1.05888 1.26479 1.50691 1.24916 0.94668 0.98822 0.95281 0.86712 0.80240 0.84510 0.77618 1.19943 1.21031 1.21091 1.21752 0.93154 0.92025 1.50647 0.92807 1.19878 0.91221 0.85427 0.97849 1.62603 1.17061 1.45591 1.00405 1.22145 0.94755 0.93206 0.90793 1.22602 0.98177 1.01894 0.91936 1.22372 0.99538 0.96086 0.98599 1.22125 0.99843 0.97355 0.96697 1.22556 1.00076 0.99142 0.94072 1.21325 0.93013 0.96158 0.90775 1.22001 0.97313 0.99671 0.96821 1.21155 0.96555 1.00983 0.93047 1.21544 0.99684 0.95111 0.94791 1.22953 1.00221 0.94038 1.03912 1.22972 0.98017 1.05157 0.96007 1.21144 0.95150 0.97283 0.98117 1.21529 0.97941 1.01997 0.92774 0.93016 0.94350 0.95239 0.94288 0.90079 0.91449 0.92495 0.92594 0.92585 0.93045 0.91174 0.92560 0.93938 0.91875 0.91087 0.91943 0.92578 0.89168 0.89301 0.89365 0.89248 0.91737 0.92447 0.90728 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.54 -14.15 6.49 -34.44 -0.22 -14.38 16 8 H 0.05 1.44 6.17 -52.49 -0.32 1.12 16 9 C 0.18 4.47 4.42 -4.97 -0.02 4.45 16 10 N -0.53 -10.97 4.47 -218.03 -0.97 -11.94 16 11 C 0.10 1.91 1.48 -65.86 -0.10 1.82 16 12 C -0.11 -2.11 4.79 -24.55 -0.12 -2.23 16 13 C -0.13 -2.01 6.82 -25.07 -0.17 -2.18 16 14 C -0.12 -1.75 6.80 -25.61 -0.17 -1.92 16 15 C -0.12 -1.90 4.77 -25.61 -0.12 -2.02 16 16 C 0.10 1.80 1.57 -67.78 -0.11 1.69 16 17 C -0.12 -1.87 4.08 -26.66 -0.11 -1.98 16 18 C -0.08 -1.09 5.68 -26.55 -0.15 -1.24 16 19 C -0.11 -1.50 1.97 -154.53 -0.30 -1.80 16 20 C -0.17 -2.08 9.93 -26.80 -0.27 -2.34 16 21 C -0.18 -2.13 9.99 -26.81 -0.27 -2.40 16 22 C -0.08 -1.20 5.67 -26.56 -0.15 -1.35 16 23 C -0.10 -1.86 5.12 -26.67 -0.14 -2.00 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.04 1.03 6.42 -51.93 -0.33 0.69 16 26 H 0.03 0.78 5.90 -51.93 -0.31 0.47 16 27 H 0.04 0.81 7.24 -51.93 -0.38 0.44 16 28 H 0.08 1.80 7.04 -51.93 -0.37 1.44 16 29 H 0.07 1.38 7.23 -51.93 -0.38 1.00 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.14 7.92 -51.93 -0.41 0.73 16 35 H 0.06 0.82 5.99 -51.93 -0.31 0.51 16 36 H 0.04 0.91 6.84 -51.93 -0.36 0.56 16 37 H 0.06 0.98 8.05 -51.93 -0.42 0.57 16 38 H 0.07 1.10 4.42 -51.93 -0.23 0.87 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 47 H 0.07 1.52 6.11 -51.93 -0.32 1.20 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -26.99 347.04 -11.30 -38.29 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.75 Total: 3.30 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -2.52 Total: -26.18 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.24 Total: -36.86 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.99 -11.30 -38.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254443664.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.282 kcal (2) G-P(sol) polarization free energy of solvation -26.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds