Wall clock time and date at job start Mon Mar 30 2020 01:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.47000 * 2 1 4 4 H 1.09000 * 109.46367 * 306.20599 * 3 2 1 5 5 C 1.50694 * 109.46755 * 186.20751 * 3 2 1 6 6 H 1.08004 * 119.99550 * 239.99688 * 5 3 2 7 7 C 1.37877 * 120.00326 * 59.72365 * 5 3 2 8 8 N 1.31512 * 119.99651 * 0.27359 * 7 5 3 9 9 Si 1.86798 * 119.99796 * 180.27549 * 7 5 3 10 10 H 1.48492 * 109.47648 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47081 * 120.00181 * 9 7 5 12 12 H 1.48509 * 109.46845 * 239.99773 * 9 7 5 13 13 N 1.46898 * 109.47021 * 66.20468 * 3 2 1 14 14 C 1.46909 * 110.99923 * 260.99418 * 13 3 2 15 15 C 1.50703 * 109.46851 * 275.25406 * 14 13 3 16 16 C 1.34667 * 126.58773 * 93.91270 * 15 14 13 17 17 N 1.34126 * 108.01939 * 179.97438 * 16 15 14 18 18 C 1.30498 * 109.25521 * 359.97438 * 17 16 15 19 19 N 1.35051 * 108.70175 * 359.77141 * 18 17 16 20 20 C 1.46500 * 126.39934 * 180.26792 * 19 18 17 21 21 C 1.53000 * 109.46687 * 267.91435 * 20 19 18 22 22 C 1.53786 * 113.61325 * 271.52413 * 21 20 19 23 23 C 1.53787 * 87.07850 * 220.02253 * 22 21 20 24 24 C 1.53774 * 87.08327 * 25.43312 * 23 22 21 25 25 H 1.08998 * 109.47019 * 301.76783 * 1 2 3 26 26 H 1.09001 * 109.47177 * 61.76583 * 1 2 3 27 27 H 1.08996 * 109.47025 * 181.76470 * 1 2 3 28 28 H 1.08991 * 109.47108 * 239.99759 * 2 1 3 29 29 H 1.09003 * 109.46743 * 119.99791 * 2 1 3 30 30 H 0.97010 * 119.99394 * 180.02562 * 8 7 5 31 31 H 1.00896 * 110.99921 * 24.94991 * 13 3 2 32 32 H 1.08994 * 109.46923 * 35.25547 * 14 13 3 33 33 H 1.08998 * 109.46635 * 155.25411 * 14 13 3 34 34 H 1.07999 * 125.99204 * 359.95523 * 16 15 14 35 35 H 1.08004 * 125.65135 * 179.97438 * 18 17 16 36 36 H 1.08996 * 109.47336 * 27.91337 * 20 19 18 37 37 H 1.08993 * 109.46940 * 147.91646 * 20 19 18 38 38 H 1.08994 * 112.85727 * 42.83181 * 21 20 19 39 39 H 1.09003 * 113.61577 * 334.56825 * 22 21 20 40 40 H 1.08992 * 113.61372 * 105.47291 * 22 21 20 41 41 H 1.08997 * 113.61398 * 270.88187 * 23 22 21 42 42 H 1.09000 * 113.61270 * 139.98225 * 23 22 21 43 43 H 1.09002 * 113.61711 * 220.01750 * 24 23 22 44 44 H 1.08997 * 113.69240 * 89.12683 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5888 1.9873 -0.8293 5 6 3.5392 1.4453 -0.1536 6 1 4.1598 1.8845 0.6135 7 6 4.1188 0.8821 -1.2707 8 7 3.3630 0.3473 -2.2047 9 14 5.9774 0.8787 -1.4574 10 1 6.5946 1.5371 -0.2782 11 1 6.4626 -0.5215 -1.5534 12 1 6.3525 1.6182 -2.6894 13 7 1.6764 2.0905 1.2672 14 6 0.4722 2.9170 1.1094 15 6 0.8615 4.2782 0.5930 16 6 0.8884 4.6706 -0.6950 17 7 1.2875 5.9506 -0.7305 18 6 1.5084 6.3665 0.4865 19 7 1.2493 5.3553 1.3434 20 6 1.3645 5.4016 2.8031 21 6 2.7612 4.9358 3.2193 22 6 2.8665 3.4161 3.4298 23 6 3.7529 3.7255 4.6479 24 6 3.0368 5.0842 4.7250 25 1 -0.3633 0.5410 0.8737 26 1 -0.3633 0.4862 -0.9054 27 1 -0.3633 -1.0271 0.0316 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.7709 -0.0493 -2.9905 31 1 1.5530 1.4079 1.9999 32 1 -0.2056 2.4400 0.4015 33 1 -0.0248 3.0226 2.0737 34 1 0.6336 4.0613 -1.5495 35 1 1.8401 7.3564 0.7630 36 1 1.2044 6.4231 3.1480 37 1 0.6156 4.7464 3.2476 38 1 3.5498 5.3462 2.5887 39 1 1.9185 2.9443 3.6883 40 1 3.3925 2.8996 2.6270 41 1 4.8132 3.8038 4.4077 42 1 3.5584 3.0802 5.5046 43 1 3.7002 5.9143 4.9677 44 1 2.1352 5.0700 5.3373 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:47 Heat of formation + Delta-G solvation = 78.619012 kcal Electronic energy + Delta-G solvation = -22942.742273 eV Core-core repulsion = 19896.658953 eV Total energy + Delta-G solvation = -3046.083320 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.56835 -38.57188 -36.58398 -33.44340 -32.65619 -31.08782 -28.99314 -27.85500 -26.85219 -25.33364 -24.05786 -23.10895 -22.35102 -20.94683 -19.78827 -19.23046 -19.03947 -16.69141 -16.34380 -15.52193 -15.17178 -14.80659 -14.73483 -14.06151 -13.76614 -13.49643 -13.31318 -13.10517 -12.73092 -12.48710 -12.25955 -12.12979 -12.02879 -11.72228 -11.35426 -11.22128 -11.18148 -10.81598 -10.61206 -10.54064 -10.19714 -10.11636 -9.90020 -9.74436 -9.71373 -9.35105 -9.02563 -8.91935 -8.27006 -7.72562 -7.21983 -5.92016 -3.93571 2.60335 3.25988 3.35006 3.43415 3.47235 3.78671 4.49894 4.61506 4.78097 4.82243 5.01575 5.16735 5.26257 5.29691 5.36044 5.37452 5.41885 5.51128 5.74604 5.79773 5.93207 5.95145 6.02117 6.04079 6.08553 6.11586 6.13878 6.37179 6.38015 6.46435 6.68602 6.77917 6.92050 6.94687 6.99057 7.21567 7.33779 7.42816 7.74643 7.78977 7.94501 8.32656 8.54606 8.62580 8.67255 9.12438 9.70671 11.14243 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013348 B = 0.006840 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.153981 B = 4092.815628 C = 4489.745641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.219 3.781 4 H 0.035 0.965 5 C -0.482 4.482 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.671 5.671 14 C 0.128 3.872 15 C 0.018 3.982 16 C -0.023 4.023 17 N -0.495 5.495 18 C 0.159 3.841 19 N -0.447 5.447 20 C 0.122 3.878 21 C -0.123 4.123 22 C -0.115 4.115 23 C -0.149 4.149 24 C -0.134 4.134 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.033 0.967 28 H 0.100 0.900 29 H 0.033 0.967 30 H 0.257 0.743 31 H 0.325 0.675 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.161 0.839 35 H 0.193 0.807 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 7.048 12.796 15.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 C 0.112 3.888 4 H 0.053 0.947 5 C -0.521 4.521 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.302 5.302 14 C -0.003 4.003 15 C -0.097 4.097 16 C -0.171 4.171 17 N -0.214 5.214 18 C -0.123 4.123 19 N -0.130 5.130 20 C -0.001 4.001 21 C -0.142 4.142 22 C -0.152 4.152 23 C -0.186 4.186 24 C -0.172 4.172 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.119 0.881 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.143 0.857 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.178 0.822 35 H 0.210 0.790 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.819 7.962 11.964 15.158 hybrid contribution 0.369 -1.139 0.431 1.273 sum -4.450 6.823 12.395 14.832 Atomic orbital electron populations 1.21930 0.99614 0.99325 0.99795 1.22265 0.91436 1.02207 1.02941 1.19245 0.95554 0.88431 0.85589 0.94736 1.21160 0.91219 1.35401 1.04296 0.92251 1.24911 0.97722 0.95851 0.96042 1.69865 1.34323 1.39907 1.09580 0.86555 0.86270 0.77292 0.77930 1.19967 1.21380 1.21281 1.60851 1.31733 1.27224 1.10359 1.20277 0.92775 0.88631 0.98602 1.21233 1.06484 0.90315 0.91711 1.21936 1.07370 0.92473 0.95354 1.70179 1.17804 1.12289 1.21093 1.24626 1.07345 0.95207 0.85093 1.45244 1.49882 1.10881 1.07037 1.21787 0.98415 1.02236 0.77669 1.22888 0.95918 0.99420 0.95937 1.22986 0.99763 0.94503 0.97947 1.22864 0.99581 0.96625 0.99577 1.22921 1.00412 0.98220 0.95635 0.94796 0.93621 0.94773 0.88146 0.94813 0.93263 0.85728 0.92561 0.92869 0.82159 0.79008 0.89987 0.89781 0.89038 0.90876 0.87944 0.90594 0.92014 0.91969 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.82 37.16 0.33 -2.40 16 2 C -0.15 -3.28 5.12 -26.72 -0.14 -3.42 16 3 C 0.22 5.05 2.01 -68.87 -0.14 4.91 16 4 H 0.03 0.90 7.00 -51.93 -0.36 0.54 16 5 C -0.48 -12.82 8.84 -34.44 -0.30 -13.13 16 6 H 0.06 1.62 7.75 -52.48 -0.41 1.22 16 7 C 0.05 1.50 5.28 -17.82 -0.09 1.41 16 8 N -0.90 -25.33 11.28 55.43 0.63 -24.71 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 N -0.67 -12.39 3.03 -109.22 -0.33 -12.73 16 14 C 0.13 2.11 5.11 -4.97 -0.03 2.09 16 15 C 0.02 0.32 6.33 -81.60 -0.52 -0.19 16 16 C -0.02 -0.47 11.30 -17.81 -0.20 -0.67 16 17 N -0.50 -9.82 11.25 -14.66 -0.16 -9.98 16 18 C 0.16 2.57 12.56 -90.37 -1.14 1.44 16 19 N -0.45 -6.87 2.75 -113.99 -0.31 -7.19 16 20 C 0.12 1.41 5.80 -4.04 -0.02 1.39 16 21 C -0.12 -1.51 3.96 -89.80 -0.36 -1.87 16 22 C -0.11 -1.57 5.99 -25.91 -0.16 -1.72 16 23 C -0.15 -1.74 8.08 -25.92 -0.21 -1.94 16 24 C -0.13 -1.34 7.64 -25.92 -0.20 -1.53 16 25 H 0.03 0.54 6.29 -51.93 -0.33 0.22 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.10 2.58 5.92 -51.93 -0.31 2.27 16 29 H 0.03 0.72 8.00 -51.93 -0.42 0.31 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.32 5.59 7.94 -39.29 -0.31 5.28 16 32 H 0.06 0.96 5.96 -51.93 -0.31 0.65 16 33 H 0.05 0.74 7.37 -51.93 -0.38 0.36 16 34 H 0.16 3.29 8.04 -52.49 -0.42 2.87 16 35 H 0.19 2.33 8.06 -52.48 -0.42 1.91 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.91 7.02 -51.93 -0.36 0.55 16 38 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.07 0.95 7.46 -51.93 -0.39 0.56 16 40 H 0.10 1.82 6.94 -51.93 -0.36 1.46 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -29.53 343.18 -10.50 -40.02 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.30 Total: 8.31 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -3.17 Total: -15.65 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.18 Total: -54.60 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.53 -10.50 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.642 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds