Wall clock time and date at job start Mon Mar 30 2020 01:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.47000 * 2 1 4 4 H 1.09000 * 109.46367 * 306.20599 * 3 2 1 5 5 C 1.50694 * 109.46755 * 186.20751 * 3 2 1 6 6 H 1.08004 * 119.99550 * 239.99688 * 5 3 2 7 7 C 1.37877 * 120.00326 * 59.72365 * 5 3 2 8 8 N 1.31512 * 119.99651 * 0.27359 * 7 5 3 9 9 Si 1.86798 * 119.99796 * 180.27549 * 7 5 3 10 10 H 1.48492 * 109.47648 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47081 * 120.00181 * 9 7 5 12 12 H 1.48509 * 109.46845 * 239.99773 * 9 7 5 13 13 N 1.46898 * 109.47021 * 66.20468 * 3 2 1 14 14 C 1.46909 * 110.99923 * 260.99418 * 13 3 2 15 15 C 1.50703 * 109.46851 * 275.25406 * 14 13 3 16 16 C 1.34667 * 126.58773 * 93.91270 * 15 14 13 17 17 N 1.34126 * 108.01939 * 179.97438 * 16 15 14 18 18 C 1.30498 * 109.25521 * 359.97438 * 17 16 15 19 19 N 1.35051 * 108.70175 * 359.77141 * 18 17 16 20 20 C 1.46500 * 126.39934 * 180.26792 * 19 18 17 21 21 C 1.53000 * 109.46687 * 267.91435 * 20 19 18 22 22 C 1.53786 * 113.61325 * 271.52413 * 21 20 19 23 23 C 1.53787 * 87.07850 * 220.02253 * 22 21 20 24 24 C 1.53774 * 87.08327 * 25.43312 * 23 22 21 25 25 H 1.08998 * 109.47019 * 301.76783 * 1 2 3 26 26 H 1.09001 * 109.47177 * 61.76583 * 1 2 3 27 27 H 1.08996 * 109.47025 * 181.76470 * 1 2 3 28 28 H 1.08991 * 109.47108 * 239.99759 * 2 1 3 29 29 H 1.09003 * 109.46743 * 119.99791 * 2 1 3 30 30 H 0.97010 * 119.99394 * 180.02562 * 8 7 5 31 31 H 1.00896 * 110.99921 * 24.94991 * 13 3 2 32 32 H 1.08994 * 109.46923 * 35.25547 * 14 13 3 33 33 H 1.08998 * 109.46635 * 155.25411 * 14 13 3 34 34 H 1.07999 * 125.99204 * 359.95523 * 16 15 14 35 35 H 1.08004 * 125.65135 * 179.97438 * 18 17 16 36 36 H 1.08996 * 109.47336 * 27.91337 * 20 19 18 37 37 H 1.08993 * 109.46940 * 147.91646 * 20 19 18 38 38 H 1.08994 * 112.85727 * 42.83181 * 21 20 19 39 39 H 1.09003 * 113.61577 * 334.56825 * 22 21 20 40 40 H 1.08992 * 113.61372 * 105.47291 * 22 21 20 41 41 H 1.08997 * 113.61398 * 270.88187 * 23 22 21 42 42 H 1.09000 * 113.61270 * 139.98225 * 23 22 21 43 43 H 1.09002 * 113.61711 * 220.01750 * 24 23 22 44 44 H 1.08997 * 113.69240 * 89.12683 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5888 1.9873 -0.8293 5 6 3.5392 1.4453 -0.1536 6 1 4.1598 1.8845 0.6135 7 6 4.1188 0.8821 -1.2707 8 7 3.3630 0.3473 -2.2047 9 14 5.9774 0.8787 -1.4574 10 1 6.5946 1.5371 -0.2782 11 1 6.4626 -0.5215 -1.5534 12 1 6.3525 1.6182 -2.6894 13 7 1.6764 2.0905 1.2672 14 6 0.4722 2.9170 1.1094 15 6 0.8615 4.2782 0.5930 16 6 0.8884 4.6706 -0.6950 17 7 1.2875 5.9506 -0.7305 18 6 1.5084 6.3665 0.4865 19 7 1.2493 5.3553 1.3434 20 6 1.3645 5.4016 2.8031 21 6 2.7612 4.9358 3.2193 22 6 2.8665 3.4161 3.4298 23 6 3.7529 3.7255 4.6479 24 6 3.0368 5.0842 4.7250 25 1 -0.3633 0.5410 0.8737 26 1 -0.3633 0.4862 -0.9054 27 1 -0.3633 -1.0271 0.0316 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.7709 -0.0493 -2.9905 31 1 1.5530 1.4079 1.9999 32 1 -0.2056 2.4400 0.4015 33 1 -0.0248 3.0226 2.0737 34 1 0.6336 4.0613 -1.5495 35 1 1.8401 7.3564 0.7630 36 1 1.2044 6.4231 3.1480 37 1 0.6156 4.7464 3.2476 38 1 3.5498 5.3462 2.5887 39 1 1.9185 2.9443 3.6883 40 1 3.3925 2.8996 2.6270 41 1 4.8132 3.8038 4.4077 42 1 3.5584 3.0802 5.5046 43 1 3.7002 5.9143 4.9677 44 1 2.1352 5.0700 5.3373 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:47 Heat of formation + Delta-G solvation = 63.516020 kcal Electronic energy + Delta-G solvation = -22943.397188 eV Core-core repulsion = 19896.658953 eV Total energy + Delta-G solvation = -3046.738235 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.88071 -39.54332 -38.26397 -34.76998 -34.43712 -32.77801 -30.48954 -28.96240 -28.63991 -26.26254 -25.75730 -24.17497 -23.95574 -22.31611 -21.51150 -20.39187 -20.16457 -18.38635 -17.88347 -16.82987 -16.68497 -16.23746 -16.02852 -15.57828 -15.16688 -14.90868 -14.76240 -14.44794 -14.03138 -14.01045 -13.66082 -13.46759 -13.10114 -13.07526 -13.03669 -12.77016 -12.68744 -12.40461 -12.27490 -11.92007 -11.65211 -11.58841 -11.49888 -11.15807 -10.94670 -10.90639 -10.73936 -10.36766 -10.16434 -9.14139 -8.80884 -8.02520 -6.09918 1.27354 1.36157 1.39810 1.49141 2.10315 2.34773 2.45387 3.25066 3.70928 3.79242 3.89099 3.91615 3.96248 4.08372 4.16273 4.35425 4.39915 4.45787 4.51379 4.57417 4.60318 4.63740 4.73725 4.75923 4.96909 5.02209 5.06015 5.07469 5.12938 5.18272 5.27867 5.42539 5.45858 5.59764 5.63166 5.69098 5.75206 5.84213 5.94213 5.98506 6.42076 6.54537 6.73687 6.97158 7.05698 7.29829 7.58115 9.01107 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013348 B = 0.006840 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.153981 B = 4092.815628 C = 4489.745641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.232 3.768 4 H -0.001 1.001 5 C -0.490 4.490 6 H 0.046 0.954 7 C 0.008 3.992 8 N -0.920 5.920 9 Si 0.942 3.058 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.291 1.291 13 N -0.664 5.664 14 C 0.132 3.868 15 C 0.018 3.982 16 C -0.063 4.063 17 N -0.538 5.538 18 C 0.169 3.831 19 N -0.441 5.441 20 C 0.118 3.882 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.150 4.150 24 C -0.111 4.111 25 H 0.060 0.940 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.256 0.744 31 H 0.336 0.664 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.137 0.863 35 H 0.234 0.766 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.138 8.179 16.108 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.123 3.877 4 H 0.017 0.983 5 C -0.530 4.530 6 H 0.064 0.936 7 C -0.190 4.190 8 N -0.561 5.561 9 Si 0.770 3.230 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.218 1.218 13 N -0.295 5.295 14 C 0.002 3.998 15 C -0.099 4.099 16 C -0.211 4.211 17 N -0.257 5.257 18 C -0.113 4.113 19 N -0.123 5.123 20 C -0.003 4.003 21 C -0.142 4.142 22 C -0.158 4.158 23 C -0.188 4.188 24 C -0.148 4.148 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.155 0.845 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.154 0.846 35 H 0.251 0.749 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.587 9.087 15.313 18.663 hybrid contribution 0.637 -1.443 -0.566 1.676 sum -4.950 7.643 14.748 17.333 Atomic orbital electron populations 1.21782 0.96457 1.00776 1.00441 1.22068 0.94242 1.00767 1.01189 1.18873 0.93339 0.89002 0.86483 0.98313 1.21481 0.93304 1.34471 1.03694 0.93558 1.25560 1.01138 0.96093 0.96165 1.69998 1.35486 1.40766 1.09882 0.85744 0.82400 0.77423 0.77438 1.19736 1.20564 1.21777 1.60622 1.33337 1.27091 1.08410 1.20306 0.91747 0.87389 1.00379 1.21288 1.05956 0.91376 0.91300 1.21849 1.09884 0.93257 0.96069 1.70092 1.19652 1.12371 1.23607 1.25402 1.05135 0.96574 0.84235 1.45448 1.48597 1.09669 1.08617 1.22156 0.98140 1.04987 0.75038 1.22808 0.95713 0.98146 0.97570 1.22919 1.00196 0.95174 0.97480 1.22848 0.98665 0.98314 0.98970 1.22830 1.01240 0.97205 0.93561 0.92155 0.94799 0.93019 0.91955 0.94408 0.93521 0.84466 0.93215 0.88940 0.84556 0.74944 0.86304 0.88068 0.91762 0.89739 0.92691 0.91997 0.90722 0.90828 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 8.82 71.98 0.63 -4.25 16 2 C -0.14 -6.38 5.12 30.60 0.16 -6.22 16 3 C 0.23 10.97 2.01 44.17 0.09 11.06 16 4 H 0.00 -0.06 7.00 -2.39 -0.02 -0.07 16 5 C -0.49 -26.97 8.84 25.60 0.23 -26.74 16 6 H 0.05 2.61 7.75 -2.91 -0.02 2.59 16 7 C 0.01 0.44 5.28 84.66 0.45 0.89 16 8 N -0.92 -53.97 11.28 21.45 0.24 -53.73 16 9 Si 0.94 45.85 29.54 68.60 2.03 47.87 16 10 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 13 N -0.66 -24.23 3.03 -499.45 -1.51 -25.75 16 14 C 0.13 4.18 5.11 85.56 0.44 4.62 16 15 C 0.02 0.63 6.33 40.95 0.26 0.89 16 16 C -0.06 -2.66 11.30 83.52 0.94 -1.72 16 17 N -0.54 -21.65 11.25 -200.31 -2.25 -23.90 16 18 C 0.17 5.20 12.56 180.26 2.26 7.46 16 19 N -0.44 -12.64 2.75 -514.57 -1.42 -14.05 16 20 C 0.12 2.25 5.80 86.38 0.50 2.75 16 21 C -0.12 -2.71 3.96 -10.26 -0.04 -2.75 16 22 C -0.12 -3.08 5.99 31.12 0.19 -2.89 16 23 C -0.15 -3.15 8.08 31.12 0.25 -2.90 16 24 C -0.11 -1.75 7.64 31.12 0.24 -1.51 16 25 H 0.06 1.81 6.29 -2.39 -0.02 1.79 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 3.30 5.92 -2.39 -0.01 3.28 16 29 H 0.04 1.61 8.00 -2.39 -0.02 1.59 16 30 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 31 H 0.34 11.05 7.94 -89.70 -0.71 10.34 16 32 H 0.05 1.66 5.96 -2.39 -0.01 1.65 16 33 H 0.09 2.21 7.37 -2.39 -0.02 2.19 16 34 H 0.14 6.15 8.04 -2.91 -0.02 6.13 16 35 H 0.23 4.87 8.06 -2.91 -0.02 4.84 16 36 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 1.65 7.02 -2.39 -0.02 1.64 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 39 H 0.08 1.93 7.46 -2.39 -0.02 1.91 16 40 H 0.05 1.96 6.94 -2.39 -0.02 1.95 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -68.62 343.18 3.95 -64.67 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.27 Total: 26.21 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 6.59 Total: -21.32 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -4.94 Total: -117.43 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -68.62 3.95 -64.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.188 kcal (2) G-P(sol) polarization free energy of solvation -68.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds