Wall clock time and date at job start Mon Mar 30 2020 01:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47100 * 2 1 4 4 H 1.09005 * 109.47065 * 184.30150 * 3 2 1 5 5 C 1.50693 * 109.47155 * 304.30092 * 3 2 1 6 6 H 1.08003 * 120.00419 * 119.99722 * 5 3 2 7 7 C 1.37880 * 120.00269 * 299.99887 * 5 3 2 8 8 N 1.31510 * 119.99686 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00227 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.46865 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46795 * 120.00123 * 9 7 5 12 12 H 1.48503 * 109.47081 * 239.99812 * 9 7 5 13 13 N 1.46895 * 109.46988 * 64.30267 * 3 2 1 14 14 C 1.46901 * 111.00546 * 82.45159 * 13 3 2 15 15 C 1.50695 * 109.47564 * 185.54687 * 14 13 3 16 16 C 1.34671 * 126.58867 * 95.02594 * 15 14 13 17 17 N 1.34133 * 108.01816 * 179.97438 * 16 15 14 18 18 C 1.30491 * 109.25579 * 0.02562 * 17 16 15 19 19 N 1.35042 * 108.70295 * 359.76494 * 18 17 16 20 20 C 1.46504 * 126.40173 * 180.27228 * 19 18 17 21 21 C 1.53007 * 109.46742 * 265.12002 * 20 19 18 22 22 C 1.53781 * 113.61179 * 272.49090 * 21 20 19 23 23 C 1.53785 * 87.08031 * 220.01993 * 22 21 20 24 24 C 1.53782 * 113.60814 * 174.99725 * 21 20 19 25 25 H 1.09000 * 109.47303 * 294.40351 * 1 2 3 26 26 H 1.08997 * 109.47106 * 174.40187 * 1 2 3 27 27 H 1.08998 * 109.46938 * 54.40309 * 1 2 3 28 28 H 1.09000 * 109.47185 * 120.00248 * 2 1 3 29 29 H 1.09005 * 109.47130 * 240.00478 * 2 1 3 30 30 H 0.97004 * 120.00555 * 180.02562 * 8 7 5 31 31 H 1.00902 * 111.00171 * 318.50279 * 13 3 2 32 32 H 1.08998 * 109.46976 * 305.55439 * 14 13 3 33 33 H 1.09004 * 109.46501 * 65.54810 * 14 13 3 34 34 H 1.08004 * 125.99309 * 359.96468 * 16 15 14 35 35 H 1.08000 * 125.64737 * 179.97438 * 18 17 16 36 36 H 1.08999 * 109.46893 * 25.11267 * 20 19 18 37 37 H 1.08996 * 109.47527 * 145.11731 * 20 19 18 38 38 H 1.09004 * 112.84821 * 43.80422 * 21 20 19 39 39 H 1.08995 * 113.61848 * 334.57224 * 22 21 20 40 40 H 1.08998 * 113.60783 * 105.47737 * 22 21 20 41 41 H 1.08997 * 113.61271 * 270.88798 * 23 22 21 42 42 H 1.08997 * 113.61159 * 139.98412 * 23 22 21 43 43 H 1.09005 * 113.61144 * 254.52518 * 24 21 20 44 44 H 1.08996 * 113.61901 * 25.34937 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4435 -0.0771 5 6 1.4526 2.1830 -1.1737 6 1 0.8409 3.0578 -1.0091 7 6 1.6959 1.7438 -2.4578 8 7 2.4402 0.6783 -2.6583 9 14 0.9683 2.6621 -3.9127 10 1 0.1759 3.8182 -3.4222 11 1 2.0640 3.1495 -4.7885 12 1 0.0871 1.7489 -4.6840 13 7 1.6370 2.1043 1.2480 14 6 2.5664 1.7818 2.3389 15 6 2.0485 2.3641 3.6288 16 6 1.3051 1.7290 4.5549 17 7 1.0533 2.5935 5.5490 18 6 1.6120 3.7403 5.2738 19 7 2.2473 3.6386 4.0866 20 6 3.0062 4.6956 3.4133 21 6 2.1006 5.4138 2.4107 22 6 2.0734 4.7534 1.0221 23 6 2.0844 6.1739 0.4330 24 6 2.7675 6.6238 1.7353 25 1 -0.3634 0.4246 0.9358 26 1 -0.3633 -1.0227 -0.1002 27 1 -0.3633 0.5982 -0.8356 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 2.6117 0.3693 -3.5617 31 1 0.6897 1.8616 1.4965 32 1 2.6502 0.6994 2.4367 33 1 3.5468 2.2037 2.1176 34 1 0.9702 0.7033 4.5057 35 1 1.5754 4.6233 5.8946 36 1 3.3682 5.4101 4.1525 37 1 3.8536 4.2559 2.8874 38 1 1.1106 5.6289 2.8130 39 1 2.9713 4.1791 0.7941 40 1 1.1547 4.2033 0.8183 41 1 1.0893 6.5963 0.2934 42 1 2.7163 6.2757 -0.4492 43 1 2.4091 7.5838 2.1072 44 1 3.8552 6.5616 1.7035 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:50 Heat of formation + Delta-G solvation = 78.235489 kcal Electronic energy + Delta-G solvation = -22898.563580 eV Core-core repulsion = 19852.463629 eV Total energy + Delta-G solvation = -3046.099951 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.83412 -38.45441 -36.59530 -33.59125 -32.87206 -31.04280 -29.02074 -27.92167 -26.40064 -25.09649 -24.08715 -23.17644 -23.05057 -21.10784 -19.55029 -19.29753 -18.99518 -17.04125 -16.04924 -15.50790 -15.04230 -14.83024 -14.72422 -13.99984 -13.84568 -13.65629 -13.29923 -12.96322 -12.81689 -12.62645 -12.34491 -12.05453 -11.93363 -11.81499 -11.51247 -11.27186 -10.96595 -10.74539 -10.56013 -10.44093 -10.07095 -10.00922 -9.93637 -9.64830 -9.63497 -9.51676 -9.14304 -8.98294 -8.37379 -8.07308 -7.14716 -6.00502 -4.01681 2.34033 3.06258 3.28443 3.37670 3.41166 3.44976 4.41914 4.66065 4.85121 4.92861 4.93192 5.08354 5.23995 5.31956 5.33258 5.38574 5.46868 5.62226 5.70488 5.82553 5.87279 6.02468 6.13272 6.13922 6.21520 6.33564 6.35160 6.37109 6.55529 6.59223 6.76037 6.89640 7.03606 7.05264 7.23006 7.23625 7.29615 7.49345 7.49902 7.69006 7.86350 8.24261 8.34732 8.48119 8.57028 9.04280 9.62233 11.06448 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.006624 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.971209 B = 4226.189210 C = 5501.224286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.147 4.147 3 C 0.217 3.783 4 H 0.032 0.968 5 C -0.483 4.483 6 H 0.064 0.936 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.671 5.671 14 C 0.129 3.871 15 C 0.005 3.995 16 C -0.040 4.040 17 N -0.498 5.498 18 C 0.164 3.836 19 N -0.441 5.441 20 C 0.119 3.881 21 C -0.131 4.131 22 C -0.095 4.095 23 C -0.151 4.151 24 C -0.132 4.132 25 H 0.027 0.973 26 H 0.023 0.977 27 H 0.068 0.932 28 H 0.011 0.989 29 H 0.092 0.908 30 H 0.258 0.742 31 H 0.330 0.670 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.162 0.838 35 H 0.196 0.804 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 7.583 9.795 12.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.187 4.187 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.521 4.521 6 H 0.082 0.918 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.302 5.302 14 C -0.001 4.001 15 C -0.111 4.111 16 C -0.188 4.188 17 N -0.217 5.217 18 C -0.118 4.118 19 N -0.123 5.123 20 C -0.004 4.004 21 C -0.150 4.150 22 C -0.132 4.132 23 C -0.189 4.189 24 C -0.170 4.170 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.030 0.970 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.148 0.852 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.179 0.821 35 H 0.213 0.787 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.598 8.012 10.126 13.011 hybrid contribution -0.119 -0.276 -1.339 1.372 sum 1.479 7.737 8.787 11.801 Atomic orbital electron populations 1.21594 0.97722 0.98770 1.00679 1.22117 0.94953 1.01319 1.00306 1.19207 0.95802 0.88510 0.85552 0.95034 1.21055 1.30397 1.11343 0.89345 0.91799 1.24885 0.95546 0.95095 0.98724 1.69883 1.38837 1.23812 1.20967 0.86591 0.78901 0.79905 0.82922 1.19764 1.21327 1.21355 1.61211 1.04542 1.62003 1.02480 1.20283 0.96938 0.96847 0.86066 1.21440 1.05341 0.85205 0.99122 1.21989 1.04184 1.00128 0.92534 1.70198 1.22878 1.00696 1.27881 1.24720 0.99298 0.99245 0.88490 1.45365 1.39433 1.10429 1.17107 1.21926 0.94502 0.88208 0.95735 1.22991 0.98544 0.97172 0.96315 1.23014 1.05877 0.93836 0.90474 1.22872 1.00046 0.99527 0.96461 1.22897 0.99829 0.96642 0.97637 0.95351 0.95829 0.91336 0.97025 0.88940 0.93230 0.85173 0.93847 0.91491 0.82068 0.78689 0.89911 0.89259 0.89649 0.89648 0.88324 0.91119 0.91796 0.92283 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.38 37.16 0.35 -2.31 16 2 C -0.15 -3.23 5.51 -26.73 -0.15 -3.38 16 3 C 0.22 4.79 2.33 -68.87 -0.16 4.63 16 4 H 0.03 0.79 7.90 -51.93 -0.41 0.38 16 5 C -0.48 -11.81 7.20 -34.44 -0.25 -12.06 16 6 H 0.06 1.59 7.00 -52.48 -0.37 1.22 16 7 C 0.06 1.49 5.30 -17.82 -0.09 1.40 16 8 N -0.90 -24.11 11.36 55.43 0.63 -23.48 16 9 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 13 N -0.67 -12.31 2.48 -109.22 -0.27 -12.58 16 14 C 0.13 2.12 5.49 -4.98 -0.03 2.10 16 15 C 0.01 0.08 6.41 -81.60 -0.52 -0.44 16 16 C -0.04 -0.65 11.79 -17.81 -0.21 -0.86 16 17 N -0.50 -8.21 11.25 -14.66 -0.16 -8.38 16 18 C 0.16 2.27 12.56 -90.38 -1.13 1.13 16 19 N -0.44 -6.08 2.75 -113.99 -0.31 -6.40 16 20 C 0.12 1.37 5.78 -4.04 -0.02 1.35 16 21 C -0.13 -1.64 3.96 -89.80 -0.36 -2.00 16 22 C -0.09 -1.48 5.71 -25.92 -0.15 -1.63 16 23 C -0.15 -2.12 8.08 -25.91 -0.21 -2.33 16 24 C -0.13 -1.49 7.64 -25.91 -0.20 -1.69 16 25 H 0.03 0.52 6.66 -51.93 -0.35 0.18 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 1.53 6.88 -51.93 -0.36 1.17 16 28 H 0.01 0.23 7.13 -51.93 -0.37 -0.14 16 29 H 0.09 2.32 6.20 -51.93 -0.32 2.00 16 30 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.33 6.25 6.58 -39.29 -0.26 6.00 16 32 H 0.04 0.73 7.09 -51.93 -0.37 0.36 16 33 H 0.07 1.10 7.47 -51.93 -0.39 0.72 16 34 H 0.16 2.42 8.06 -52.48 -0.42 2.00 16 35 H 0.20 1.95 8.06 -52.49 -0.42 1.52 16 36 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 37 H 0.09 1.07 7.16 -51.93 -0.37 0.70 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.49 7.50 -51.93 -0.39 1.10 16 40 H 0.10 1.82 5.74 -51.93 -0.30 1.52 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 340.53 15.07 5.13 5.13 Total: -1.00 -26.60 340.53 -10.32 -36.92 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.18 Total: 9.37 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -3.13 Total: -16.08 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.12 Total: -50.83 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -26.60 -10.32 -36.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.160 kcal (2) G-P(sol) polarization free energy of solvation -26.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds