Wall clock time and date at job start Mon Mar 30 2020 01:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47100 * 2 1 4 4 H 1.09005 * 109.47065 * 184.30150 * 3 2 1 5 5 C 1.50693 * 109.47155 * 304.30092 * 3 2 1 6 6 H 1.08003 * 120.00419 * 119.99722 * 5 3 2 7 7 C 1.37880 * 120.00269 * 299.99887 * 5 3 2 8 8 N 1.31510 * 119.99686 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00227 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.46865 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46795 * 120.00123 * 9 7 5 12 12 H 1.48503 * 109.47081 * 239.99812 * 9 7 5 13 13 N 1.46895 * 109.46988 * 64.30267 * 3 2 1 14 14 C 1.46901 * 111.00546 * 82.45159 * 13 3 2 15 15 C 1.50695 * 109.47564 * 185.54687 * 14 13 3 16 16 C 1.34671 * 126.58867 * 95.02594 * 15 14 13 17 17 N 1.34133 * 108.01816 * 179.97438 * 16 15 14 18 18 C 1.30491 * 109.25579 * 0.02562 * 17 16 15 19 19 N 1.35042 * 108.70295 * 359.76494 * 18 17 16 20 20 C 1.46504 * 126.40173 * 180.27228 * 19 18 17 21 21 C 1.53007 * 109.46742 * 265.12002 * 20 19 18 22 22 C 1.53781 * 113.61179 * 272.49090 * 21 20 19 23 23 C 1.53785 * 87.08031 * 220.01993 * 22 21 20 24 24 C 1.53782 * 113.60814 * 174.99725 * 21 20 19 25 25 H 1.09000 * 109.47303 * 294.40351 * 1 2 3 26 26 H 1.08997 * 109.47106 * 174.40187 * 1 2 3 27 27 H 1.08998 * 109.46938 * 54.40309 * 1 2 3 28 28 H 1.09000 * 109.47185 * 120.00248 * 2 1 3 29 29 H 1.09005 * 109.47130 * 240.00478 * 2 1 3 30 30 H 0.97004 * 120.00555 * 180.02562 * 8 7 5 31 31 H 1.00902 * 111.00171 * 318.50279 * 13 3 2 32 32 H 1.08998 * 109.46976 * 305.55439 * 14 13 3 33 33 H 1.09004 * 109.46501 * 65.54810 * 14 13 3 34 34 H 1.08004 * 125.99309 * 359.96468 * 16 15 14 35 35 H 1.08000 * 125.64737 * 179.97438 * 18 17 16 36 36 H 1.08999 * 109.46893 * 25.11267 * 20 19 18 37 37 H 1.08996 * 109.47527 * 145.11731 * 20 19 18 38 38 H 1.09004 * 112.84821 * 43.80422 * 21 20 19 39 39 H 1.08995 * 113.61848 * 334.57224 * 22 21 20 40 40 H 1.08998 * 113.60783 * 105.47737 * 22 21 20 41 41 H 1.08997 * 113.61271 * 270.88798 * 23 22 21 42 42 H 1.08997 * 113.61159 * 139.98412 * 23 22 21 43 43 H 1.09005 * 113.61144 * 254.52518 * 24 21 20 44 44 H 1.08996 * 113.61901 * 25.34937 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4435 -0.0771 5 6 1.4526 2.1830 -1.1737 6 1 0.8409 3.0578 -1.0091 7 6 1.6959 1.7438 -2.4578 8 7 2.4402 0.6783 -2.6583 9 14 0.9683 2.6621 -3.9127 10 1 0.1759 3.8182 -3.4222 11 1 2.0640 3.1495 -4.7885 12 1 0.0871 1.7489 -4.6840 13 7 1.6370 2.1043 1.2480 14 6 2.5664 1.7818 2.3389 15 6 2.0485 2.3641 3.6288 16 6 1.3051 1.7290 4.5549 17 7 1.0533 2.5935 5.5490 18 6 1.6120 3.7403 5.2738 19 7 2.2473 3.6386 4.0866 20 6 3.0062 4.6956 3.4133 21 6 2.1006 5.4138 2.4107 22 6 2.0734 4.7534 1.0221 23 6 2.0844 6.1739 0.4330 24 6 2.7675 6.6238 1.7353 25 1 -0.3634 0.4246 0.9358 26 1 -0.3633 -1.0227 -0.1002 27 1 -0.3633 0.5982 -0.8356 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 2.6117 0.3693 -3.5617 31 1 0.6897 1.8616 1.4965 32 1 2.6502 0.6994 2.4367 33 1 3.5468 2.2037 2.1176 34 1 0.9702 0.7033 4.5057 35 1 1.5754 4.6233 5.8946 36 1 3.3682 5.4101 4.1525 37 1 3.8536 4.2559 2.8874 38 1 1.1106 5.6289 2.8130 39 1 2.9713 4.1791 0.7941 40 1 1.1547 4.2033 0.8183 41 1 1.0893 6.5963 0.2934 42 1 2.7163 6.2757 -0.4492 43 1 2.4091 7.5838 2.1072 44 1 3.8552 6.5616 1.7035 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:49 Heat of formation + Delta-G solvation = 66.957449 kcal Electronic energy + Delta-G solvation = -22899.052632 eV Core-core repulsion = 19852.463629 eV Total energy + Delta-G solvation = -3046.589003 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.97076 -39.53630 -38.27464 -34.83062 -34.47055 -32.77297 -30.44689 -28.99267 -28.14613 -26.19552 -25.66277 -24.86544 -24.11924 -22.23430 -21.16242 -20.63319 -20.11443 -18.40432 -17.67146 -16.79904 -16.56837 -16.21107 -16.05736 -15.42324 -15.27837 -14.88772 -14.56022 -14.38150 -14.27266 -14.03353 -13.79684 -13.63654 -13.19527 -13.00506 -12.84875 -12.81242 -12.53976 -12.39283 -12.29110 -11.86345 -11.73411 -11.50511 -11.39128 -11.14013 -10.91439 -10.81947 -10.78112 -10.37461 -10.23442 -9.28820 -8.70384 -7.99775 -6.05088 1.18268 1.41334 1.46419 1.55027 2.01417 2.27278 2.49098 3.30743 3.67873 3.74313 3.88818 3.92212 3.92853 4.05000 4.20245 4.35269 4.42594 4.43625 4.54638 4.59772 4.61394 4.66702 4.74137 4.80615 4.94059 5.01260 5.03892 5.14527 5.16894 5.22046 5.40388 5.47184 5.49546 5.61670 5.73592 5.78090 5.82932 5.86829 5.88794 5.96502 6.38298 6.45011 6.72692 6.85569 7.07639 7.21275 7.61846 9.05784 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.006624 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.971209 B = 4226.189210 C = 5501.224286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.142 4.142 3 C 0.229 3.771 4 H 0.001 0.999 5 C -0.476 4.476 6 H 0.057 0.943 7 C 0.015 3.985 8 N -0.922 5.922 9 Si 0.939 3.061 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.659 5.659 14 C 0.139 3.861 15 C -0.007 4.007 16 C -0.051 4.051 17 N -0.531 5.531 18 C 0.179 3.821 19 N -0.440 5.440 20 C 0.117 3.883 21 C -0.117 4.117 22 C -0.101 4.101 23 C -0.159 4.159 24 C -0.111 4.111 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.045 0.955 28 H 0.025 0.975 29 H 0.060 0.940 30 H 0.255 0.745 31 H 0.328 0.672 32 H 0.039 0.961 33 H 0.064 0.936 34 H 0.164 0.836 35 H 0.237 0.763 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 9.551 11.569 15.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.182 4.182 3 C 0.120 3.880 4 H 0.019 0.981 5 C -0.515 4.515 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.563 5.563 9 Si 0.767 3.233 10 H -0.193 1.193 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.290 5.290 14 C 0.008 3.992 15 C -0.124 4.124 16 C -0.199 4.199 17 N -0.250 5.250 18 C -0.103 4.103 19 N -0.122 5.122 20 C -0.004 4.004 21 C -0.136 4.136 22 C -0.139 4.139 23 C -0.196 4.196 24 C -0.149 4.149 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.147 0.853 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.182 0.818 35 H 0.253 0.747 36 H 0.141 0.859 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.445 9.994 11.902 15.609 hybrid contribution -0.072 -0.867 -1.842 2.037 sum 1.374 9.127 10.060 13.652 Atomic orbital electron populations 1.21469 0.96302 0.99378 1.00638 1.21991 0.96130 1.00736 0.99339 1.18887 0.93619 0.88806 0.86694 0.98149 1.21234 1.29372 1.10786 0.90150 0.92477 1.25469 0.96169 0.95803 1.00845 1.70007 1.40231 1.25071 1.21039 0.85792 0.78101 0.78939 0.80486 1.19338 1.21493 1.21520 1.61093 1.04653 1.61284 1.01923 1.20126 0.96306 0.96710 0.86014 1.21154 1.06188 0.86422 0.98598 1.22151 1.04310 1.00605 0.92846 1.70205 1.24482 1.01845 1.28468 1.25520 0.97062 0.99564 0.88135 1.45496 1.39378 1.10096 1.17201 1.22100 0.93680 0.88162 0.96451 1.22836 0.98925 0.97124 0.94737 1.22817 1.03003 0.94244 0.93842 1.22911 1.00418 0.98647 0.97665 1.22790 1.00260 0.96975 0.94873 0.93513 0.94443 0.93575 0.95682 0.92134 0.93568 0.85329 0.94269 0.91765 0.81840 0.74678 0.85947 0.89815 0.89889 0.92044 0.91567 0.91074 0.92867 0.90020 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.38 71.98 0.68 -4.21 16 2 C -0.14 -6.34 5.51 30.60 0.17 -6.17 16 3 C 0.23 10.37 2.33 44.17 0.10 10.48 16 4 H 0.00 0.03 7.90 -2.38 -0.02 0.01 16 5 C -0.48 -23.88 7.20 25.60 0.18 -23.70 16 6 H 0.06 2.91 7.00 -2.91 -0.02 2.89 16 7 C 0.01 0.77 5.30 84.66 0.45 1.22 16 8 N -0.92 -51.06 11.36 21.45 0.24 -50.82 16 9 Si 0.94 42.74 29.54 68.60 2.03 44.77 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 13 N -0.66 -24.51 2.48 -499.47 -1.24 -25.75 16 14 C 0.14 4.57 5.49 85.56 0.47 5.04 16 15 C -0.01 -0.21 6.41 40.95 0.26 0.05 16 16 C -0.05 -1.60 11.79 83.52 0.98 -0.62 16 17 N -0.53 -16.42 11.25 -200.31 -2.25 -18.68 16 18 C 0.18 4.35 12.56 180.27 2.26 6.61 16 19 N -0.44 -11.03 2.75 -514.56 -1.42 -12.45 16 20 C 0.12 2.35 5.78 86.38 0.50 2.84 16 21 C -0.12 -2.65 3.96 -10.26 -0.04 -2.69 16 22 C -0.10 -3.15 5.71 31.12 0.18 -2.97 16 23 C -0.16 -4.28 8.08 31.12 0.25 -4.03 16 24 C -0.11 -2.16 7.64 31.12 0.24 -1.93 16 25 H 0.05 1.69 6.66 -2.39 -0.02 1.68 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 2.06 6.88 -2.39 -0.02 2.05 16 28 H 0.02 1.02 7.13 -2.39 -0.02 1.00 16 29 H 0.06 3.12 6.20 -2.38 -0.01 3.11 16 30 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 31 H 0.33 12.46 6.58 -89.69 -0.59 11.87 16 32 H 0.04 1.33 7.09 -2.39 -0.02 1.31 16 33 H 0.06 2.14 7.47 -2.38 -0.02 2.13 16 34 H 0.16 4.83 8.06 -2.91 -0.02 4.81 16 35 H 0.24 3.50 8.06 -2.91 -0.02 3.47 16 36 H 0.12 1.56 8.13 -2.39 -0.02 1.54 16 37 H 0.08 1.82 7.16 -2.39 -0.02 1.80 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 2.19 7.50 -2.39 -0.02 2.17 16 40 H 0.07 2.48 5.74 -2.39 -0.01 2.47 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.09 1.56 8.10 -2.39 -0.02 1.55 16 Total: -1.00 -58.79 340.53 4.44 -54.35 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.39 Total: 28.64 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 6.69 Total: -20.06 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -4.66 Total: -107.69 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -58.79 4.44 -54.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.307 kcal (2) G-P(sol) polarization free energy of solvation -58.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds