Wall clock time and date at job start Mon Mar 30 2020 01:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47126 * 2 1 4 4 H 1.09002 * 109.47158 * 305.59990 * 3 2 1 5 5 C 1.50706 * 109.46898 * 185.60301 * 3 2 1 6 6 H 1.07989 * 120.00158 * 245.40404 * 5 3 2 7 7 C 1.37882 * 119.99652 * 65.40337 * 5 3 2 8 8 N 1.31518 * 119.99835 * 197.21590 * 7 5 3 9 9 Si 1.86793 * 120.00146 * 17.22098 * 7 5 3 10 10 H 1.48498 * 109.47427 * 86.80214 * 9 7 5 11 11 H 1.48501 * 109.47333 * 206.80400 * 9 7 5 12 12 H 1.48497 * 109.47337 * 326.80067 * 9 7 5 13 13 N 1.46895 * 109.47390 * 65.60563 * 3 2 1 14 14 C 1.46902 * 110.99983 * 251.61892 * 13 3 2 15 15 C 1.50693 * 109.46921 * 183.51976 * 14 13 3 16 16 C 1.34672 * 125.98832 * 95.00608 * 15 14 13 17 17 N 1.36880 * 106.82137 * 179.97438 * 16 15 14 18 18 C 1.46495 * 126.40183 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47254 * 89.99246 * 18 17 16 20 20 C 1.53777 * 113.61866 * 272.50335 * 19 18 17 21 21 C 1.53786 * 87.08181 * 220.01822 * 20 19 18 22 22 C 1.53777 * 87.07994 * 25.42932 * 21 20 19 23 23 C 1.35042 * 107.20251 * 359.97438 * 17 16 15 24 24 N 1.30500 * 108.70456 * 359.77229 * 23 17 16 25 25 H 1.08991 * 109.47465 * 305.16488 * 1 2 3 26 26 H 1.09002 * 109.47381 * 185.15739 * 1 2 3 27 27 H 1.09010 * 109.46989 * 65.16397 * 1 2 3 28 28 H 1.08999 * 109.47093 * 119.99932 * 2 1 3 29 29 H 1.09004 * 109.47453 * 239.99457 * 2 1 3 30 30 H 0.96995 * 120.00064 * 180.02562 * 8 7 5 31 31 H 1.00908 * 110.99894 * 15.56806 * 13 3 2 32 32 H 1.08996 * 109.46754 * 303.52564 * 14 13 3 33 33 H 1.09006 * 109.47105 * 63.52302 * 14 13 3 34 34 H 1.08004 * 126.59370 * 359.97434 * 16 15 14 35 35 H 1.09002 * 109.47437 * 209.99380 * 18 17 16 36 36 H 1.09003 * 109.47321 * 330.00045 * 18 17 16 37 37 H 1.09002 * 112.85034 * 43.81137 * 19 18 17 38 38 H 1.09001 * 113.61285 * 334.56289 * 20 19 18 39 39 H 1.08995 * 113.61893 * 105.46846 * 20 19 18 40 40 H 1.09006 * 113.61288 * 270.88164 * 21 20 19 41 41 H 1.09001 * 113.61482 * 139.98033 * 21 20 19 42 42 H 1.09003 * 113.61607 * 220.02199 * 22 21 20 43 43 H 1.08998 * 113.69076 * 89.13065 * 22 21 20 44 44 H 1.08008 * 125.65154 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9845 -0.8356 5 6 3.5406 1.4447 -0.1387 6 1 4.1572 1.8069 0.6705 7 6 4.1263 0.9843 -1.2990 8 7 5.4022 0.6654 -1.3097 9 14 3.1077 0.8137 -2.8554 10 1 3.0999 2.1064 -3.5862 11 1 3.6974 -0.2400 -3.7199 12 1 1.7161 0.4389 -2.4977 13 7 1.6639 2.0949 1.2613 14 6 0.6037 3.0883 1.0445 15 6 0.3056 3.7959 2.3411 16 6 0.8327 4.9685 2.7421 17 7 0.2946 5.2455 3.9698 18 6 0.5754 6.4216 4.7969 19 6 -0.4124 7.5371 4.4495 20 6 0.0499 8.4290 3.2852 21 6 -0.5041 9.6218 4.0824 22 6 -0.2817 8.7779 5.3485 23 6 -0.5437 4.2321 4.2763 24 7 -0.5360 3.3714 3.2954 25 1 -0.3634 0.5918 0.8400 26 1 -0.3634 -1.0235 0.0924 27 1 -0.3633 0.4317 -0.9327 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 5.8143 0.3418 -2.1260 31 1 1.3854 1.4137 1.9517 32 1 0.9329 3.8146 0.3014 33 1 -0.2966 2.5872 0.6887 34 1 1.5435 5.5741 2.1994 35 1 0.4712 6.1588 5.8496 36 1 1.5924 6.7649 4.6070 37 1 -1.4367 7.1786 4.3466 38 1 1.1321 8.4541 3.1575 39 1 -0.4831 8.2414 2.3531 40 1 -1.5535 9.8340 3.8778 41 1 0.1258 10.5100 4.0334 42 1 -1.0824 8.8719 6.0821 43 1 0.7094 8.8975 5.7861 44 1 -1.1273 4.1497 5.1814 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:52 Heat of formation + Delta-G solvation = 78.465049 kcal Electronic energy + Delta-G solvation = -21318.193144 eV Core-core repulsion = 18272.103148 eV Total energy + Delta-G solvation = -3046.089996 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.87686 -39.18191 -36.64533 -33.98483 -32.32712 -31.37986 -29.29599 -28.53496 -27.06744 -26.01264 -24.30856 -23.43726 -22.21031 -20.83928 -20.06963 -19.79505 -19.49015 -17.19864 -16.53648 -15.87882 -15.72800 -15.02283 -14.69147 -14.31814 -14.10656 -13.84801 -13.72403 -13.33113 -12.87308 -12.81414 -12.79856 -12.53126 -12.17235 -11.90760 -11.79339 -11.60861 -11.25500 -11.14900 -10.84901 -10.76040 -10.65577 -10.53587 -10.29541 -9.80879 -9.71323 -9.43787 -9.30209 -9.21478 -8.28131 -8.10276 -7.13893 -5.97524 -3.87032 2.28129 2.86250 3.35434 3.40385 3.44390 3.46862 4.07722 4.22734 4.28448 4.42361 4.52549 4.74910 4.80188 4.87002 5.04678 5.10540 5.29280 5.29503 5.32995 5.42545 5.47461 5.51209 5.63319 5.68658 5.75293 5.80749 5.96315 6.00218 6.04655 6.17526 6.25571 6.38659 6.47123 6.66753 6.71091 6.89358 7.00037 7.04150 7.32120 7.40803 7.89688 8.10226 8.35747 8.52039 8.85819 9.21768 9.70790 11.16156 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024662 B = 0.003510 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.084206 B = 7976.250717 C = 8490.767504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.146 4.146 3 C 0.193 3.807 4 H 0.019 0.981 5 C -0.496 4.496 6 H 0.079 0.921 7 C 0.070 3.930 8 N -0.896 5.896 9 Si 0.858 3.142 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.256 1.256 13 N -0.667 5.667 14 C 0.141 3.859 15 C 0.017 3.983 16 C -0.035 4.035 17 N -0.460 5.460 18 C 0.116 3.884 19 C -0.128 4.128 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.132 4.132 23 C 0.170 3.830 24 N -0.489 5.489 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.261 0.739 31 H 0.330 0.670 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.171 0.829 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.405 15.655 12.634 24.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.185 4.185 3 C 0.084 3.916 4 H 0.037 0.963 5 C -0.534 4.534 6 H 0.097 0.903 7 C -0.131 4.131 8 N -0.534 5.534 9 Si 0.685 3.315 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.181 1.181 13 N -0.298 5.298 14 C 0.010 3.990 15 C -0.112 4.112 16 C -0.168 4.168 17 N -0.144 5.144 18 C -0.007 4.007 19 C -0.147 4.147 20 C -0.174 4.174 21 C -0.180 4.180 22 C -0.170 4.170 23 C -0.112 4.112 24 N -0.208 5.208 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.188 0.812 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -13.161 15.435 12.521 23.838 hybrid contribution -0.711 0.046 -0.994 1.223 sum -13.872 15.481 11.528 23.770 Atomic orbital electron populations 1.21953 0.98429 1.00234 1.00793 1.22520 0.92771 1.01363 1.01879 1.19555 0.96528 0.88463 0.87006 0.96319 1.21026 0.89282 1.40989 1.02099 0.90276 1.24904 0.94720 0.94783 0.98673 1.69996 1.11970 1.43827 1.27655 0.87284 0.81963 0.77845 0.84407 1.20657 1.21653 1.18058 1.60632 1.38617 1.18819 1.11685 1.20222 0.93517 0.94935 0.90284 1.20736 0.98205 0.94440 0.97821 1.22442 1.04864 1.01225 0.88285 1.45427 1.34525 1.18438 1.15995 1.21890 1.00001 0.83884 0.94938 1.22998 0.99949 0.93621 0.98118 1.22987 1.01334 0.95563 0.97493 1.22794 1.01467 0.97306 0.96384 1.22900 1.02414 0.95040 0.96656 1.24792 0.98592 0.86631 1.01161 1.70149 1.20944 1.27971 1.01768 0.93053 0.94038 0.93833 0.92393 0.92174 0.92922 0.85253 0.90623 0.95066 0.81195 0.89073 0.89047 0.88617 0.89776 0.91229 0.90186 0.91232 0.91187 0.89731 0.78634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.45 37.16 0.35 -2.61 16 2 C -0.15 -3.27 4.56 -26.73 -0.12 -3.39 16 3 C 0.19 4.66 1.73 -68.86 -0.12 4.54 16 4 H 0.02 0.46 6.15 -51.93 -0.32 0.15 16 5 C -0.50 -14.27 9.25 -34.44 -0.32 -14.59 16 6 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 7 C 0.07 2.06 5.30 -17.82 -0.09 1.96 16 8 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 9 Si 0.86 21.50 25.86 -169.99 -4.40 17.11 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.26 -6.06 5.65 56.52 0.32 -5.74 16 13 N -0.67 -14.54 6.02 -109.22 -0.66 -15.20 16 14 C 0.14 2.67 5.62 -4.98 -0.03 2.64 16 15 C 0.02 0.29 6.64 -82.85 -0.55 -0.26 16 16 C -0.04 -0.52 11.49 -16.56 -0.19 -0.71 16 17 N -0.46 -5.41 2.75 -118.57 -0.33 -5.73 16 18 C 0.12 0.89 5.99 -4.04 -0.02 0.87 16 19 C -0.13 -0.88 3.96 -89.81 -0.36 -1.23 16 20 C -0.14 -1.00 7.63 -25.92 -0.20 -1.19 16 21 C -0.14 -0.85 8.08 -25.92 -0.21 -1.06 16 22 C -0.13 -0.71 7.64 -25.92 -0.20 -0.90 16 23 C 0.17 2.20 12.56 -90.38 -1.14 1.07 16 24 N -0.49 -8.26 11.25 -10.87 -0.12 -8.38 16 25 H 0.05 0.94 5.97 -51.93 -0.31 0.63 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.81 8.14 -51.92 -0.42 0.38 16 28 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 29 H 0.06 1.42 5.17 -51.93 -0.27 1.15 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.33 7.10 7.71 -39.29 -0.30 6.80 16 32 H 0.08 1.41 8.06 -51.93 -0.42 0.99 16 33 H 0.03 0.59 6.61 -51.93 -0.34 0.25 16 34 H 0.17 2.26 8.06 -52.48 -0.42 1.84 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.67 7.84 -51.93 -0.41 0.26 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.60 7.90 -51.93 -0.41 0.19 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 44 H 0.20 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 348.79 15.07 5.26 5.26 Total: -1.00 -32.88 348.79 -10.15 -43.03 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.49 Total: 5.80 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -3.19 Total: -14.86 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.33 Total: -56.34 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.40 Total: 17.11 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.88 -10.15 -43.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.498 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds