Wall clock time and date at job start Mon Mar 30 2020 01:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47126 * 2 1 4 4 H 1.09002 * 109.47158 * 305.59990 * 3 2 1 5 5 C 1.50706 * 109.46898 * 185.60301 * 3 2 1 6 6 H 1.07989 * 120.00158 * 245.40404 * 5 3 2 7 7 C 1.37882 * 119.99652 * 65.40337 * 5 3 2 8 8 N 1.31518 * 119.99835 * 197.21590 * 7 5 3 9 9 Si 1.86793 * 120.00146 * 17.22098 * 7 5 3 10 10 H 1.48498 * 109.47427 * 86.80214 * 9 7 5 11 11 H 1.48501 * 109.47333 * 206.80400 * 9 7 5 12 12 H 1.48497 * 109.47337 * 326.80067 * 9 7 5 13 13 N 1.46895 * 109.47390 * 65.60563 * 3 2 1 14 14 C 1.46902 * 110.99983 * 251.61892 * 13 3 2 15 15 C 1.50693 * 109.46921 * 183.51976 * 14 13 3 16 16 C 1.34672 * 125.98832 * 95.00608 * 15 14 13 17 17 N 1.36880 * 106.82137 * 179.97438 * 16 15 14 18 18 C 1.46495 * 126.40183 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47254 * 89.99246 * 18 17 16 20 20 C 1.53777 * 113.61866 * 272.50335 * 19 18 17 21 21 C 1.53786 * 87.08181 * 220.01822 * 20 19 18 22 22 C 1.53777 * 87.07994 * 25.42932 * 21 20 19 23 23 C 1.35042 * 107.20251 * 359.97438 * 17 16 15 24 24 N 1.30500 * 108.70456 * 359.77229 * 23 17 16 25 25 H 1.08991 * 109.47465 * 305.16488 * 1 2 3 26 26 H 1.09002 * 109.47381 * 185.15739 * 1 2 3 27 27 H 1.09010 * 109.46989 * 65.16397 * 1 2 3 28 28 H 1.08999 * 109.47093 * 119.99932 * 2 1 3 29 29 H 1.09004 * 109.47453 * 239.99457 * 2 1 3 30 30 H 0.96995 * 120.00064 * 180.02562 * 8 7 5 31 31 H 1.00908 * 110.99894 * 15.56806 * 13 3 2 32 32 H 1.08996 * 109.46754 * 303.52564 * 14 13 3 33 33 H 1.09006 * 109.47105 * 63.52302 * 14 13 3 34 34 H 1.08004 * 126.59370 * 359.97434 * 16 15 14 35 35 H 1.09002 * 109.47437 * 209.99380 * 18 17 16 36 36 H 1.09003 * 109.47321 * 330.00045 * 18 17 16 37 37 H 1.09002 * 112.85034 * 43.81137 * 19 18 17 38 38 H 1.09001 * 113.61285 * 334.56289 * 20 19 18 39 39 H 1.08995 * 113.61893 * 105.46846 * 20 19 18 40 40 H 1.09006 * 113.61288 * 270.88164 * 21 20 19 41 41 H 1.09001 * 113.61482 * 139.98033 * 21 20 19 42 42 H 1.09003 * 113.61607 * 220.02199 * 22 21 20 43 43 H 1.08998 * 113.69076 * 89.13065 * 22 21 20 44 44 H 1.08008 * 125.65154 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9845 -0.8356 5 6 3.5406 1.4447 -0.1387 6 1 4.1572 1.8069 0.6705 7 6 4.1263 0.9843 -1.2990 8 7 5.4022 0.6654 -1.3097 9 14 3.1077 0.8137 -2.8554 10 1 3.0999 2.1064 -3.5862 11 1 3.6974 -0.2400 -3.7199 12 1 1.7161 0.4389 -2.4977 13 7 1.6639 2.0949 1.2613 14 6 0.6037 3.0883 1.0445 15 6 0.3056 3.7959 2.3411 16 6 0.8327 4.9685 2.7421 17 7 0.2946 5.2455 3.9698 18 6 0.5754 6.4216 4.7969 19 6 -0.4124 7.5371 4.4495 20 6 0.0499 8.4290 3.2852 21 6 -0.5041 9.6218 4.0824 22 6 -0.2817 8.7779 5.3485 23 6 -0.5437 4.2321 4.2763 24 7 -0.5360 3.3714 3.2954 25 1 -0.3634 0.5918 0.8400 26 1 -0.3634 -1.0235 0.0924 27 1 -0.3633 0.4317 -0.9327 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 5.8143 0.3418 -2.1260 31 1 1.3854 1.4137 1.9517 32 1 0.9329 3.8146 0.3014 33 1 -0.2966 2.5872 0.6887 34 1 1.5435 5.5741 2.1994 35 1 0.4712 6.1588 5.8496 36 1 1.5924 6.7649 4.6070 37 1 -1.4367 7.1786 4.3466 38 1 1.1321 8.4541 3.1575 39 1 -0.4831 8.2414 2.3531 40 1 -1.5535 9.8340 3.8778 41 1 0.1258 10.5100 4.0334 42 1 -1.0824 8.8719 6.0821 43 1 0.7094 8.8975 5.7861 44 1 -1.1273 4.1497 5.1814 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:52 Heat of formation + Delta-G solvation = 58.601517 kcal Electronic energy + Delta-G solvation = -21319.054491 eV Core-core repulsion = 18272.103148 eV Total energy + Delta-G solvation = -3046.951344 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.92569 -39.74135 -38.40579 -35.11821 -34.28127 -33.00351 -30.59809 -29.62431 -28.65981 -26.50408 -25.80679 -24.23157 -23.94768 -21.86568 -21.62153 -21.01155 -20.28270 -18.82523 -17.95532 -16.89435 -16.62712 -16.43638 -16.17287 -15.78114 -15.12213 -15.01092 -14.96736 -14.71085 -14.37955 -14.08641 -13.83022 -13.52103 -13.38452 -13.34184 -12.99502 -12.88837 -12.63138 -12.46466 -12.28677 -12.24786 -11.75080 -11.63289 -11.40565 -11.35603 -11.30717 -11.16608 -10.80136 -10.49981 -10.29749 -9.28195 -8.87432 -8.24123 -6.18941 1.21929 1.36755 1.39498 1.49130 1.98320 2.21447 2.39838 3.07964 3.53215 3.66928 3.71919 3.73130 3.91583 3.94021 4.06065 4.23853 4.28002 4.31070 4.37746 4.42421 4.49645 4.52638 4.55152 4.75647 4.83919 4.84749 4.85635 4.90277 5.06933 5.08883 5.10771 5.12382 5.17497 5.26147 5.28343 5.42359 5.52171 5.56043 5.77976 5.82819 6.13167 6.45138 6.73213 6.84642 6.85501 7.25865 7.43382 8.93484 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024662 B = 0.003510 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.084206 B = 7976.250717 C = 8490.767504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.144 4.144 3 C 0.200 3.800 4 H 0.021 0.979 5 C -0.505 4.505 6 H 0.029 0.971 7 C 0.015 3.985 8 N -0.945 5.945 9 Si 0.927 3.073 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.231 1.231 13 N -0.677 5.677 14 C 0.148 3.852 15 C -0.017 4.017 16 C -0.035 4.035 17 N -0.451 5.451 18 C 0.111 3.889 19 C -0.123 4.123 20 C -0.145 4.145 21 C -0.142 4.142 22 C -0.120 4.120 23 C 0.181 3.819 24 N -0.529 5.529 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.330 0.670 32 H 0.071 0.929 33 H 0.032 0.968 34 H 0.177 0.823 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.702 16.594 13.526 26.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.183 4.183 3 C 0.090 3.910 4 H 0.038 0.962 5 C -0.543 4.543 6 H 0.048 0.952 7 C -0.182 4.182 8 N -0.586 5.586 9 Si 0.750 3.250 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.154 1.154 13 N -0.307 5.307 14 C 0.018 3.982 15 C -0.145 4.145 16 C -0.170 4.170 17 N -0.133 5.133 18 C -0.010 4.010 19 C -0.142 4.142 20 C -0.183 4.183 21 C -0.179 4.179 22 C -0.158 4.158 23 C -0.102 4.102 24 N -0.249 5.249 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.148 0.852 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.194 0.806 35 H 0.136 0.864 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.113 0.887 44 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -15.480 16.406 13.443 26.258 hybrid contribution 0.060 -0.154 -1.122 1.134 sum -15.420 16.252 12.321 25.568 Atomic orbital electron populations 1.21830 0.95231 1.01944 1.01274 1.22380 0.95534 0.99422 1.00972 1.19345 0.93416 0.90039 0.88155 0.96160 1.21274 0.91677 1.40478 1.00875 0.95223 1.25743 0.95881 0.94403 1.02189 1.70140 1.14212 1.45484 1.28741 0.86173 0.81354 0.78005 0.79430 1.20012 1.21432 1.15399 1.60482 1.40524 1.19053 1.10654 1.20105 0.92381 0.94038 0.91704 1.20542 1.00241 0.95731 0.97969 1.22520 1.04543 1.00530 0.89390 1.45611 1.33370 1.19188 1.15160 1.22234 1.00567 0.82607 0.95600 1.22933 0.99169 0.93724 0.98397 1.23042 1.01205 0.96901 0.97141 1.22803 1.01505 0.97104 0.96480 1.22868 1.03428 0.93215 0.96287 1.25517 0.97809 0.85654 1.01189 1.70063 1.22034 1.29939 1.02851 0.92773 0.91670 0.93188 0.93164 0.93325 0.92750 0.85222 0.91031 0.94975 0.80581 0.86420 0.88497 0.89350 0.89809 0.92978 0.90161 0.90739 0.90133 0.88658 0.74753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 9.45 71.98 0.68 -4.46 16 2 C -0.14 -6.30 4.56 30.59 0.14 -6.16 16 3 C 0.20 9.67 1.73 44.17 0.08 9.75 16 4 H 0.02 0.99 6.15 -2.39 -0.01 0.97 16 5 C -0.50 -30.01 9.25 25.60 0.24 -29.78 16 6 H 0.03 2.00 8.06 -2.92 -0.02 1.98 16 7 C 0.01 0.89 5.30 84.66 0.45 1.34 16 8 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 9 Si 0.93 44.55 25.86 68.60 1.77 46.32 16 10 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 12 H -0.23 -10.09 5.65 99.48 0.56 -9.53 16 13 N -0.68 -29.90 6.02 -499.46 -3.01 -32.90 16 14 C 0.15 5.61 5.62 85.55 0.48 6.09 16 15 C -0.02 -0.58 6.64 41.39 0.27 -0.30 16 16 C -0.04 -1.01 11.49 83.09 0.95 -0.05 16 17 N -0.45 -9.73 2.75 -529.06 -1.46 -11.19 16 18 C 0.11 1.40 5.99 86.38 0.52 1.92 16 19 C -0.12 -1.41 3.96 -10.27 -0.04 -1.45 16 20 C -0.15 -1.96 7.63 31.12 0.24 -1.72 16 21 C -0.14 -1.44 8.08 31.12 0.25 -1.19 16 22 C -0.12 -0.94 7.64 31.12 0.24 -0.70 16 23 C 0.18 4.27 12.56 180.26 2.26 6.53 16 24 N -0.53 -17.32 11.25 -188.31 -2.12 -19.43 16 25 H 0.05 1.88 5.97 -2.39 -0.01 1.87 16 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.05 2.24 8.06 -2.39 -0.02 2.22 16 29 H 0.05 2.22 5.17 -2.38 -0.01 2.21 16 30 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 31 H 0.33 14.39 7.71 -89.69 -0.69 13.70 16 32 H 0.07 2.70 8.06 -2.39 -0.02 2.68 16 33 H 0.03 1.20 6.61 -2.38 -0.02 1.19 16 34 H 0.18 4.67 8.06 -2.91 -0.02 4.64 16 35 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.10 1.17 7.84 -2.39 -0.02 1.15 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.12 7.90 -2.39 -0.02 1.10 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.09 0.57 8.10 -2.39 -0.02 0.56 16 44 H 0.24 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -73.54 348.79 2.39 -71.16 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.14 Total: 26.40 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 6.76 Total: -20.17 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -6.28 Total: -123.71 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.77 Total: 46.32 kcal Total: -73.54 2.39 -71.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.760 kcal (2) G-P(sol) polarization free energy of solvation -73.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds