Wall clock time and date at job start Mon Mar 30 2020 01:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47238 * 2 1 4 4 H 1.09004 * 109.47177 * 54.46035 * 3 2 1 5 5 C 1.50698 * 109.47225 * 174.46352 * 3 2 1 6 6 H 1.07997 * 120.00029 * 120.00326 * 5 3 2 7 7 C 1.37874 * 119.99589 * 299.99832 * 5 3 2 8 8 N 1.31517 * 119.99640 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 120.00407 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47297 * 89.99925 * 9 7 5 11 11 H 1.48504 * 109.47095 * 209.99997 * 9 7 5 12 12 H 1.48501 * 109.47228 * 329.99581 * 9 7 5 13 13 N 1.46900 * 109.46785 * 294.46379 * 3 2 1 14 14 C 1.46904 * 110.99749 * 154.43648 * 13 3 2 15 15 C 1.50702 * 109.47238 * 174.77296 * 14 13 3 16 16 C 1.34671 * 125.98701 * 94.99429 * 15 14 13 17 17 N 1.36884 * 106.81640 * 179.97438 * 16 15 14 18 18 C 1.46497 * 126.39724 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47016 * 90.00430 * 18 17 16 20 20 C 1.53773 * 113.61606 * 272.49902 * 19 18 17 21 21 C 1.53785 * 87.08243 * 220.01773 * 20 19 18 22 22 C 1.53782 * 113.61358 * 174.99705 * 19 18 17 23 23 C 1.35045 * 107.20346 * 0.02562 * 17 16 15 24 24 N 1.30496 * 108.70260 * 359.76168 * 23 17 16 25 25 H 1.09000 * 109.47031 * 186.07708 * 1 2 3 26 26 H 1.09001 * 109.46759 * 306.07498 * 1 2 3 27 27 H 1.08998 * 109.47085 * 66.07281 * 1 2 3 28 28 H 1.09002 * 109.46649 * 239.99932 * 2 1 3 29 29 H 1.09001 * 109.47154 * 120.00314 * 2 1 3 30 30 H 0.97006 * 120.00081 * 180.02562 * 8 7 5 31 31 H 1.00901 * 111.00301 * 30.48310 * 13 3 2 32 32 H 1.09003 * 109.47054 * 294.77202 * 14 13 3 33 33 H 1.09002 * 109.47206 * 54.77623 * 14 13 3 34 34 H 1.07999 * 126.59185 * 359.97438 * 16 15 14 35 35 H 1.09005 * 109.47133 * 210.00443 * 18 17 16 36 36 H 1.08996 * 109.47495 * 330.00503 * 18 17 16 37 37 H 1.09000 * 112.85064 * 43.80664 * 19 18 17 38 38 H 1.09001 * 113.61436 * 334.56744 * 20 19 18 39 39 H 1.09000 * 113.61939 * 105.47271 * 20 19 18 40 40 H 1.08996 * 113.61583 * 270.88669 * 21 20 19 41 41 H 1.09005 * 113.61523 * 139.97705 * 21 20 19 42 42 H 1.09000 * 113.61719 * 254.52805 * 22 19 18 43 43 H 1.08995 * 113.61747 * 25.35256 * 22 19 18 44 44 H 1.08004 * 125.64869 * 179.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5980 1.9842 0.8362 5 6 3.5408 1.4447 0.1371 6 1 4.1529 1.8868 -0.6350 7 6 4.1323 0.8822 1.2483 8 7 5.4420 0.8846 1.3681 9 14 3.0736 0.1169 2.5834 10 1 2.8555 -1.3201 2.2793 11 1 3.7593 0.2469 3.8942 12 1 1.7644 0.8156 2.6383 13 7 1.6625 2.0952 -1.2607 14 6 1.5692 3.5516 -1.0920 15 6 1.3073 4.1964 -2.4287 16 6 0.1002 4.5325 -2.9222 17 7 0.3168 5.0872 -4.1548 18 6 -0.7062 5.6030 -5.0678 19 6 -0.9468 7.0861 -4.7788 20 6 -2.0028 7.3381 -3.6898 21 6 -2.5042 8.5051 -4.5566 22 6 -1.9178 7.7563 -5.7650 23 6 1.6495 5.0702 -4.3718 24 7 2.2359 4.5404 -3.3334 25 1 -0.3633 -1.0219 0.1088 26 1 -0.3633 0.6052 0.8306 27 1 -0.3633 0.4168 -0.9393 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.8582 0.4886 2.1498 31 1 0.7987 1.7167 -1.6194 32 1 0.7528 3.7867 -0.4091 33 1 2.5057 3.9307 -0.6831 34 1 -0.8551 4.3915 -2.4386 35 1 -0.3680 5.4836 -6.0972 36 1 -1.6342 5.0496 -4.9238 37 1 -0.0221 7.6436 -4.6296 38 1 -2.7255 6.5287 -3.5868 39 1 -1.5798 7.6531 -2.7358 40 1 -2.0060 9.4513 -4.3456 41 1 -3.5903 8.5942 -4.5832 42 1 -1.4262 8.4089 -6.4865 43 1 -2.6164 7.0611 -6.2305 44 1 2.1479 5.4376 -5.2568 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:55 Heat of formation + Delta-G solvation = 83.755271 kcal Electronic energy + Delta-G solvation = -21304.070245 eV Core-core repulsion = 18258.209650 eV Total energy + Delta-G solvation = -3045.860595 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.84244 -39.20105 -36.58230 -34.00028 -32.32456 -31.64306 -29.30322 -28.46938 -26.95775 -26.04394 -24.43992 -23.42144 -22.29700 -20.81648 -20.04093 -19.75858 -19.52524 -17.13904 -16.62542 -15.90731 -15.74323 -15.10746 -14.57509 -14.35547 -14.22310 -13.89472 -13.73839 -13.35371 -12.91100 -12.84651 -12.66159 -12.50775 -12.38245 -12.03588 -11.89351 -11.67496 -11.28896 -11.17720 -10.90088 -10.81153 -10.67868 -10.41241 -10.17627 -9.91061 -9.48715 -9.33198 -9.25552 -9.06742 -8.41566 -8.09360 -7.18541 -5.91089 -3.87050 2.26976 2.86913 3.33403 3.43224 3.45694 3.50269 4.05285 4.20395 4.25820 4.39339 4.51003 4.72701 4.84069 4.88734 5.01261 5.07674 5.25353 5.29156 5.31941 5.40147 5.44399 5.48146 5.59940 5.61633 5.75068 5.80319 5.88188 5.89435 6.01814 6.03599 6.23668 6.49795 6.50963 6.59172 6.69969 6.80562 6.90694 7.09785 7.29346 7.42847 7.84169 8.12544 8.39695 8.51821 8.91340 9.25931 9.72090 11.22667 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030418 B = 0.003357 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.298549 B = 8338.404666 C = 8677.440947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.135 4.135 3 C 0.191 3.809 4 H 0.000 1.000 5 C -0.491 4.491 6 H 0.083 0.917 7 C 0.064 3.936 8 N -0.903 5.903 9 Si 0.881 3.119 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.666 5.666 14 C 0.146 3.854 15 C 0.029 3.971 16 C -0.062 4.062 17 N -0.461 5.461 18 C 0.117 3.883 19 C -0.128 4.128 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.132 4.132 23 C 0.171 3.829 24 N -0.467 5.467 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.261 0.739 31 H 0.316 0.684 32 H 0.025 0.975 33 H 0.090 0.910 34 H 0.165 0.835 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.917 12.602 -13.452 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.173 4.173 3 C 0.082 3.918 4 H 0.017 0.983 5 C -0.530 4.530 6 H 0.101 0.899 7 C -0.136 4.136 8 N -0.542 5.542 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.226 1.226 12 H -0.193 1.193 13 N -0.297 5.297 14 C 0.016 3.984 15 C -0.101 4.101 16 C -0.195 4.195 17 N -0.146 5.146 18 C -0.006 4.006 19 C -0.147 4.147 20 C -0.174 4.174 21 C -0.179 4.179 22 C -0.170 4.170 23 C -0.111 4.111 24 N -0.185 5.185 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.043 0.957 33 H 0.109 0.891 34 H 0.182 0.818 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -17.362 12.499 -13.554 25.325 hybrid contribution -2.174 -0.329 1.108 2.462 sum -19.536 12.170 -12.446 26.166 Atomic orbital electron populations 1.21910 0.98299 1.00452 1.00681 1.22116 0.92856 1.00534 1.01774 1.19622 0.96958 0.89146 0.86069 0.98281 1.21103 0.89195 1.36876 1.05783 0.89859 1.24971 0.94733 0.96174 0.97731 1.69903 1.08839 1.46140 1.29309 0.86959 0.80766 0.79732 0.81318 1.20710 1.22622 1.19335 1.60395 1.36218 1.01755 1.31307 1.20061 1.01013 0.88801 0.88523 1.20815 0.88315 1.03035 0.97897 1.22362 1.00523 1.08246 0.88341 1.45445 1.07807 1.46294 1.15013 1.21857 0.91416 0.94017 0.93332 1.23005 0.98827 0.94808 0.98064 1.22974 0.97864 0.98669 0.97847 1.22796 1.00820 0.97854 0.96467 1.22902 0.98264 0.99351 0.96518 1.24974 0.79898 1.05254 1.00985 1.70263 1.32923 1.14311 1.01001 0.93714 0.93602 0.93177 0.91339 0.92842 0.92883 0.86693 0.95664 0.89143 0.81768 0.89071 0.89364 0.88466 0.90006 0.91210 0.90104 0.91296 0.91120 0.89822 0.78535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.64 37.16 0.36 -2.37 16 2 C -0.13 -2.99 5.01 -26.73 -0.13 -3.12 16 3 C 0.19 4.65 1.61 -68.87 -0.11 4.54 16 4 H 0.00 -0.01 6.91 -51.93 -0.36 -0.37 16 5 C -0.49 -14.50 9.15 -34.44 -0.32 -14.82 16 6 H 0.08 2.77 8.06 -52.49 -0.42 2.35 16 7 C 0.06 1.93 5.45 -17.82 -0.10 1.83 16 8 N -0.90 -28.72 13.96 55.43 0.77 -27.94 16 9 Si 0.88 22.50 24.41 -169.99 -4.15 18.35 16 10 H -0.28 -6.95 6.83 56.52 0.39 -6.56 16 11 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 12 H -0.27 -6.52 6.53 56.52 0.37 -6.15 16 13 N -0.67 -14.56 6.26 -109.21 -0.68 -15.24 16 14 C 0.15 2.95 5.99 -4.97 -0.03 2.92 16 15 C 0.03 0.53 6.65 -82.85 -0.55 -0.03 16 16 C -0.06 -0.87 11.49 -16.56 -0.19 -1.06 16 17 N -0.46 -5.39 2.75 -118.58 -0.33 -5.72 16 18 C 0.12 0.86 5.99 -4.04 -0.02 0.83 16 19 C -0.13 -0.86 3.96 -89.81 -0.36 -1.22 16 20 C -0.14 -0.94 7.63 -25.92 -0.20 -1.13 16 21 C -0.14 -0.81 8.08 -25.91 -0.21 -1.02 16 22 C -0.13 -0.68 7.64 -25.92 -0.20 -0.88 16 23 C 0.17 2.37 12.56 -90.38 -1.14 1.24 16 24 N -0.47 -8.83 11.25 -10.87 -0.12 -8.95 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.78 6.66 -51.93 -0.35 0.43 16 28 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.05 1.26 3.21 -51.93 -0.17 1.10 16 30 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 31 H 0.32 6.11 6.64 -39.29 -0.26 5.85 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 2.10 7.94 -51.93 -0.41 1.69 16 34 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.57 7.84 -51.93 -0.41 0.16 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.52 7.90 -51.93 -0.41 0.11 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 44 H 0.20 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 349.05 15.07 5.26 5.26 Total: -1.00 -34.60 349.05 -9.90 -44.51 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.46 Total: 4.03 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -3.19 Total: -14.28 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.36 Total: -57.86 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.15 Total: 18.35 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.60 -9.90 -44.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.261 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds