Wall clock time and date at job start Mon Mar 30 2020 01:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47238 * 2 1 4 4 H 1.09004 * 109.47177 * 54.46035 * 3 2 1 5 5 C 1.50698 * 109.47225 * 174.46352 * 3 2 1 6 6 H 1.07997 * 120.00029 * 120.00326 * 5 3 2 7 7 C 1.37874 * 119.99589 * 299.99832 * 5 3 2 8 8 N 1.31517 * 119.99640 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 120.00407 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47297 * 89.99925 * 9 7 5 11 11 H 1.48504 * 109.47095 * 209.99997 * 9 7 5 12 12 H 1.48501 * 109.47228 * 329.99581 * 9 7 5 13 13 N 1.46900 * 109.46785 * 294.46379 * 3 2 1 14 14 C 1.46904 * 110.99749 * 154.43648 * 13 3 2 15 15 C 1.50702 * 109.47238 * 174.77296 * 14 13 3 16 16 C 1.34671 * 125.98701 * 94.99429 * 15 14 13 17 17 N 1.36884 * 106.81640 * 179.97438 * 16 15 14 18 18 C 1.46497 * 126.39724 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47016 * 90.00430 * 18 17 16 20 20 C 1.53773 * 113.61606 * 272.49902 * 19 18 17 21 21 C 1.53785 * 87.08243 * 220.01773 * 20 19 18 22 22 C 1.53782 * 113.61358 * 174.99705 * 19 18 17 23 23 C 1.35045 * 107.20346 * 0.02562 * 17 16 15 24 24 N 1.30496 * 108.70260 * 359.76168 * 23 17 16 25 25 H 1.09000 * 109.47031 * 186.07708 * 1 2 3 26 26 H 1.09001 * 109.46759 * 306.07498 * 1 2 3 27 27 H 1.08998 * 109.47085 * 66.07281 * 1 2 3 28 28 H 1.09002 * 109.46649 * 239.99932 * 2 1 3 29 29 H 1.09001 * 109.47154 * 120.00314 * 2 1 3 30 30 H 0.97006 * 120.00081 * 180.02562 * 8 7 5 31 31 H 1.00901 * 111.00301 * 30.48310 * 13 3 2 32 32 H 1.09003 * 109.47054 * 294.77202 * 14 13 3 33 33 H 1.09002 * 109.47206 * 54.77623 * 14 13 3 34 34 H 1.07999 * 126.59185 * 359.97438 * 16 15 14 35 35 H 1.09005 * 109.47133 * 210.00443 * 18 17 16 36 36 H 1.08996 * 109.47495 * 330.00503 * 18 17 16 37 37 H 1.09000 * 112.85064 * 43.80664 * 19 18 17 38 38 H 1.09001 * 113.61436 * 334.56744 * 20 19 18 39 39 H 1.09000 * 113.61939 * 105.47271 * 20 19 18 40 40 H 1.08996 * 113.61583 * 270.88669 * 21 20 19 41 41 H 1.09005 * 113.61523 * 139.97705 * 21 20 19 42 42 H 1.09000 * 113.61719 * 254.52805 * 22 19 18 43 43 H 1.08995 * 113.61747 * 25.35256 * 22 19 18 44 44 H 1.08004 * 125.64869 * 179.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5980 1.9842 0.8362 5 6 3.5408 1.4447 0.1371 6 1 4.1529 1.8868 -0.6350 7 6 4.1323 0.8822 1.2483 8 7 5.4420 0.8846 1.3681 9 14 3.0736 0.1169 2.5834 10 1 2.8555 -1.3201 2.2793 11 1 3.7593 0.2469 3.8942 12 1 1.7644 0.8156 2.6383 13 7 1.6625 2.0952 -1.2607 14 6 1.5692 3.5516 -1.0920 15 6 1.3073 4.1964 -2.4287 16 6 0.1002 4.5325 -2.9222 17 7 0.3168 5.0872 -4.1548 18 6 -0.7062 5.6030 -5.0678 19 6 -0.9468 7.0861 -4.7788 20 6 -2.0028 7.3381 -3.6898 21 6 -2.5042 8.5051 -4.5566 22 6 -1.9178 7.7563 -5.7650 23 6 1.6495 5.0702 -4.3718 24 7 2.2359 4.5404 -3.3334 25 1 -0.3633 -1.0219 0.1088 26 1 -0.3633 0.6052 0.8306 27 1 -0.3633 0.4168 -0.9393 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.8582 0.4886 2.1498 31 1 0.7987 1.7167 -1.6194 32 1 0.7528 3.7867 -0.4091 33 1 2.5057 3.9307 -0.6831 34 1 -0.8551 4.3915 -2.4386 35 1 -0.3680 5.4836 -6.0972 36 1 -1.6342 5.0496 -4.9238 37 1 -0.0221 7.6436 -4.6296 38 1 -2.7255 6.5287 -3.5868 39 1 -1.5798 7.6531 -2.7358 40 1 -2.0060 9.4513 -4.3456 41 1 -3.5903 8.5942 -4.5832 42 1 -1.4262 8.4089 -6.4865 43 1 -2.6164 7.0611 -6.2305 44 1 2.1479 5.4376 -5.2568 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:54 Heat of formation + Delta-G solvation = 60.984603 kcal Electronic energy + Delta-G solvation = -21305.057655 eV Core-core repulsion = 18258.209650 eV Total energy + Delta-G solvation = -3046.848005 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.92731 -39.72944 -38.36993 -35.15093 -34.28253 -33.31894 -30.58425 -29.47388 -28.68943 -26.49036 -25.92259 -24.24526 -23.99084 -21.82272 -21.66024 -21.02758 -20.27040 -18.82435 -18.04449 -17.03798 -16.54625 -16.44146 -16.22262 -15.78540 -15.29845 -15.08475 -14.88242 -14.76746 -14.20482 -14.09204 -13.94095 -13.69507 -13.33992 -13.31678 -13.13038 -12.88774 -12.65958 -12.45129 -12.32662 -12.11342 -11.74921 -11.68370 -11.36493 -11.24470 -11.18974 -11.15552 -10.68598 -10.64147 -10.29279 -9.28029 -8.93783 -8.24079 -6.26306 1.20150 1.29823 1.35733 1.46722 1.99091 2.25029 2.34284 3.08163 3.54751 3.67181 3.71667 3.74621 3.83547 3.95295 4.07789 4.23630 4.30695 4.32505 4.34585 4.40221 4.46097 4.51646 4.57442 4.79971 4.85271 4.86875 4.88171 4.92109 5.00944 5.08093 5.11852 5.12123 5.16873 5.24648 5.27608 5.43282 5.47241 5.57084 5.74352 5.87090 6.12899 6.44151 6.55727 6.81239 7.03443 7.36097 7.37953 8.94367 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030418 B = 0.003357 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.298549 B = 8338.404666 C = 8677.440947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.197 3.803 4 H -0.002 1.002 5 C -0.501 4.501 6 H 0.021 0.979 7 C 0.002 3.998 8 N -0.956 5.956 9 Si 0.956 3.044 10 H -0.263 1.263 11 H -0.299 1.299 12 H -0.243 1.243 13 N -0.678 5.678 14 C 0.154 3.846 15 C -0.018 4.018 16 C -0.033 4.033 17 N -0.449 5.449 18 C 0.113 3.887 19 C -0.127 4.127 20 C -0.141 4.141 21 C -0.143 4.143 22 C -0.120 4.120 23 C 0.176 3.824 24 N -0.535 5.535 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.335 0.665 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.196 0.804 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.402 12.363 -14.466 30.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.088 3.912 4 H 0.015 0.985 5 C -0.539 4.539 6 H 0.039 0.961 7 C -0.194 4.194 8 N -0.598 5.598 9 Si 0.782 3.218 10 H -0.189 1.189 11 H -0.227 1.227 12 H -0.167 1.167 13 N -0.311 5.311 14 C 0.025 3.975 15 C -0.146 4.146 16 C -0.168 4.168 17 N -0.131 5.131 18 C -0.008 4.008 19 C -0.147 4.147 20 C -0.179 4.179 21 C -0.180 4.180 22 C -0.158 4.158 23 C -0.107 4.107 24 N -0.254 5.254 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.213 0.787 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -21.898 12.282 -14.617 29.052 hybrid contribution -0.718 -0.114 1.268 1.462 sum -22.616 12.168 -13.348 28.944 Atomic orbital electron populations 1.21830 0.93938 1.02522 1.02134 1.21986 0.96693 0.97815 1.00708 1.19395 0.93298 0.91289 0.87202 0.98460 1.21346 0.92055 1.36159 1.04383 0.96072 1.25934 0.96107 0.96750 1.00623 1.70092 1.11318 1.47820 1.30549 0.85749 0.79455 0.79545 0.77023 1.18878 1.22715 1.16720 1.60191 1.37682 1.02956 1.30231 1.19845 0.99164 0.87729 0.90809 1.20559 0.90137 1.06249 0.97687 1.22598 1.00020 1.05665 0.88517 1.45667 1.08004 1.44769 1.14686 1.22250 0.90944 0.94207 0.93414 1.22944 0.98444 0.94356 0.98918 1.23038 0.98188 0.99577 0.97089 1.22802 1.01347 0.97342 0.96551 1.22876 0.97685 0.99209 0.96027 1.25475 0.80876 1.03749 1.00561 1.70129 1.35281 1.16928 1.03067 0.91177 0.92890 0.91214 0.92330 0.94097 0.92709 0.84578 0.93334 0.94276 0.78676 0.86801 0.87406 0.90111 0.88965 0.93146 0.90648 0.90458 0.90620 0.88207 0.75360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 9.64 71.98 0.69 -3.84 16 2 C -0.13 -5.72 5.01 30.59 0.15 -5.56 16 3 C 0.20 9.72 1.61 44.17 0.07 9.79 16 4 H 0.00 -0.10 6.91 -2.39 -0.02 -0.12 16 5 C -0.50 -31.25 9.15 25.60 0.23 -31.02 16 6 H 0.02 1.53 8.06 -2.91 -0.02 1.50 16 7 C 0.00 0.09 5.45 84.65 0.46 0.55 16 8 N -0.96 -63.93 13.96 21.45 0.30 -63.63 16 9 Si 0.96 46.90 24.41 68.60 1.67 48.57 16 10 H -0.26 -12.12 6.83 99.48 0.68 -11.44 16 11 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 12 H -0.24 -10.88 6.53 99.48 0.65 -10.23 16 13 N -0.68 -30.10 6.26 -499.45 -3.12 -33.23 16 14 C 0.15 6.45 5.99 85.56 0.51 6.96 16 15 C -0.02 -0.64 6.65 41.39 0.28 -0.37 16 16 C -0.03 -0.86 11.49 83.09 0.95 0.10 16 17 N -0.45 -9.39 2.75 -529.06 -1.46 -10.84 16 18 C 0.11 1.22 5.99 86.38 0.52 1.74 16 19 C -0.13 -1.36 3.96 -10.27 -0.04 -1.40 16 20 C -0.14 -1.61 7.63 31.12 0.24 -1.37 16 21 C -0.14 -1.29 8.08 31.12 0.25 -1.04 16 22 C -0.12 -0.82 7.64 31.12 0.24 -0.59 16 23 C 0.18 4.72 12.56 180.26 2.26 6.98 16 24 N -0.54 -20.83 11.25 -188.31 -2.12 -22.95 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 27 H 0.07 1.87 6.66 -2.39 -0.02 1.85 16 28 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.04 1.84 3.21 -2.39 -0.01 1.83 16 30 H 0.26 16.41 8.31 -92.70 -0.77 15.64 16 31 H 0.33 12.49 6.64 -89.69 -0.60 11.89 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.98 7.94 -2.39 -0.02 1.96 16 34 H 0.20 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.11 0.84 7.84 -2.39 -0.02 0.82 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 0.86 7.90 -2.39 -0.02 0.84 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 41 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.10 0.41 8.10 -2.39 -0.02 0.39 16 44 H 0.23 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -82.58 349.05 2.39 -80.19 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.29 Total: 20.95 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 6.82 Total: -19.06 kcal Atomic # 7 Polarization: -124.25 SS G_CDS: -6.40 Total: -130.65 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.67 Total: 48.57 kcal Total: -82.58 2.39 -80.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.173 kcal (2) G-P(sol) polarization free energy of solvation -82.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds